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The map label for this gene is yajD [H]

Identifier: 121997713

GI number: 121997713

Start: 996382

End: 996774

Strand: Reverse

Name: yajD [H]

Synonym: Hhal_0922

Alternate gene names: 121997713

Gene position: 996774-996382 (Counterclockwise)

Preceding gene: 121997714

Following gene: 121997712

Centisome position: 37.21

GC content: 71.5

Gene sequence:

>393_bases
ATGGGGCAGCCCGACGGGAAACGCCTGGACGCCATTGTCGCCCGCGCCCAGCAGGAGCGCGCGCAGCGCGAACACGGCTA
CCGGGAGAAGGCACTGAAGCGCTTCCCCTGGGTGTGCGGGCGGTGTGGGCGCGAATTCGATCGGCGCAACGTCCGCGAAC
TCACGGTCCACCACATCGACCACAACCACGACCACAACCCCGAGGACGGCAGCAACTGGGAGCTGCTCTGCCTCTACTGC
CACGATCACGAGCACCAGCGCGAGATCGGCCCGGCCACCGGTCCCGAGCAGCCGCGCCGCAAGGGCCGCGGGGCCGCCCC
CCAGTCGACGCACTCGCCCTTCGCGGGGCTCGGCGACCTGCTCGGGCGGGATCCGGAGCAGGGCAGCGACTGA

Upstream 100 bases:

>100_bases
GGGTCGACCGGTGGTGCTGTGGCGCCGTGGTCACGCCGGCGGCGGCTGGCTACTATGGGCGGTGTATGAGGTCCATCGAG
CCGGATCAGGGAGGTCAGCC

Downstream 100 bases:

>100_bases
CCCCGGCGACGCCGCAGTTGCTCCTGCTCCAAAGCAGCCAGCGGAAGGAGCCGAACCATGCCGTCGATCCTGGCCGTAGG
GGTGGCCACCCTCGATATCA

Product: HNH endonuclease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 130; Mature: 129

Protein sequence:

>130_residues
MGQPDGKRLDAIVARAQQERAQREHGYREKALKRFPWVCGRCGREFDRRNVRELTVHHIDHNHDHNPEDGSNWELLCLYC
HDHEHQREIGPATGPEQPRRKGRGAAPQSTHSPFAGLGDLLGRDPEQGSD

Sequences:

>Translated_130_residues
MGQPDGKRLDAIVARAQQERAQREHGYREKALKRFPWVCGRCGREFDRRNVRELTVHHIDHNHDHNPEDGSNWELLCLYC
HDHEHQREIGPATGPEQPRRKGRGAAPQSTHSPFAGLGDLLGRDPEQGSD
>Mature_129_residues
GQPDGKRLDAIVARAQQERAQREHGYREKALKRFPWVCGRCGREFDRRNVRELTVHHIDHNHDHNPEDGSNWELLCLYCH
DHEHQREIGPATGPEQPRRKGRGAAPQSTHSPFAGLGDLLGRDPEQGSD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786611, Length=116, Percent_Identity=52.5862068965517, Blast_Score=126, Evalue=5e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002711
- InterPro:   IPR003615
- InterPro:   IPR015880 [H]

Pfam domain/function: PF01844 HNH [H]

EC number: NA

Molecular weight: Translated: 14857; Mature: 14725

Theoretical pI: Translated: 7.33; Mature: 7.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.1 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
3.1 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGQPDGKRLDAIVARAQQERAQREHGYREKALKRFPWVCGRCGREFDRRNVRELTVHHID
CCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCC
HNHDHNPEDGSNWELLCLYCHDHEHQREIGPATGPEQPRRKGRGAAPQSTHSPFAGLGDL
CCCCCCCCCCCCEEEEEEEECCCCHHHHCCCCCCCCCHHHCCCCCCCCCCCCCHHHHHHH
LGRDPEQGSD
HCCCCCCCCC
>Mature Secondary Structure 
GQPDGKRLDAIVARAQQERAQREHGYREKALKRFPWVCGRCGREFDRRNVRELTVHHID
CCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCC
HNHDHNPEDGSNWELLCLYCHDHEHQREIGPATGPEQPRRKGRGAAPQSTHSPFAGLGDL
CCCCCCCCCCCCEEEEEEEECCCCHHHHCCCCCCCCCHHHCCCCCCCCCCCCCHHHHHHH
LGRDPEQGSD
HCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]