Click here to switch to the map view.

The map label for this gene is ymdB [C]

Identifier: 121997700

GI number: 121997700

Start: 982873

End: 983418

Strand: Reverse

Name: ymdB [C]

Synonym: Hhal_0909

Alternate gene names: 121997700

Gene position: 983418-982873 (Counterclockwise)

Preceding gene: 121997701

Following gene: 121997699

Centisome position: 36.72

GC content: 71.06

Gene sequence:

>546_bases
ATGCAGGCACGGTTTGCGGAACTCACCGTGGAGACCCGGGTGGGGGATATCGCCGCCCAGGGCGACTGCGATGCCGTGGT
CAATGCCGCGAACGCCCAGCTGATGCCCGGCGGCGGCGTGGCCGGGGCGCTGCATCGCGCGGCCGGGCCGGAACTGGCCG
AGGCGTGCCGGCCGCTGGCGCCCATTCAGCCGGGGCAGGCGGTGATCACCGCCGGCTTTGGCCTGCCCAATCGGCACGTC
ATCCACTGCCTCGGTCCGGTCTACGGCGTCGACGAACCCGGCGAGCAGCTGCTCGCCGCCTGCTACCGCAACGCTCTGCA
CCGGGCCGAGGAGCACGAGCTGACCCGGGTGGCGATGCCGGCGCTGTCCACCGGCGCCTTCGGTTTTCCTATGGAGCGCG
CCGCCCGGGTGGCCATCGGCACCCTGCAGCGGACGGCGGCGCAGCTCCGGTACGTCCGGCATGTCCGCTTTGTCCTGGCC
GACGCGGCGGCGCAGCAGATCCACGATCACGTGATTCAAGAACTGGCGGAGAACACAAGTGGCTAA

Upstream 100 bases:

>100_bases
CGAGGCCCGCAGCAGCTCCTGACTGCTACCTTCCTGGTAGGGGTGCTGAGGCTTCCCCGCGCGGTCCGCGGGCCGCCGGG
CGCTGTCGTTAGGAGGGACC

Downstream 100 bases:

>100_bases
CGTGCTGGAAACGCAGCGGGTGATTGATACCTGGAACCGGGAGGCCCTCCCGGCCCTGGAGCAGTTCGTGCGCATTCCGG
CCAAGTCCCCCCACTTCGAT

Product: appr-1-p processing domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 181; Mature: 181

Protein sequence:

>181_residues
MQARFAELTVETRVGDIAAQGDCDAVVNAANAQLMPGGGVAGALHRAAGPELAEACRPLAPIQPGQAVITAGFGLPNRHV
IHCLGPVYGVDEPGEQLLAACYRNALHRAEEHELTRVAMPALSTGAFGFPMERAARVAIGTLQRTAAQLRYVRHVRFVLA
DAAAQQIHDHVIQELAENTSG

Sequences:

>Translated_181_residues
MQARFAELTVETRVGDIAAQGDCDAVVNAANAQLMPGGGVAGALHRAAGPELAEACRPLAPIQPGQAVITAGFGLPNRHV
IHCLGPVYGVDEPGEQLLAACYRNALHRAEEHELTRVAMPALSTGAFGFPMERAARVAIGTLQRTAAQLRYVRHVRFVLA
DAAAQQIHDHVIQELAENTSG
>Mature_181_residues
MQARFAELTVETRVGDIAAQGDCDAVVNAANAQLMPGGGVAGALHRAAGPELAEACRPLAPIQPGQAVITAGFGLPNRHV
IHCLGPVYGVDEPGEQLLAACYRNALHRAEEHELTRVAMPALSTGAFGFPMERAARVAIGTLQRTAAQLRYVRHVRFVLA
DAAAQQIHDHVIQELAENTSG

Specific function: Unknown

COG id: COG2110

COG function: function code R; Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Macro domain [H]

Homologues:

Organism=Homo sapiens, GI13569840, Length=131, Percent_Identity=46.5648854961832, Blast_Score=115, Evalue=2e-26,
Organism=Homo sapiens, GI117968621, Length=127, Percent_Identity=44.8818897637795, Blast_Score=112, Evalue=1e-25,
Organism=Homo sapiens, GI20336746, Length=168, Percent_Identity=33.9285714285714, Blast_Score=94, Evalue=9e-20,
Organism=Homo sapiens, GI207450721, Length=132, Percent_Identity=34.0909090909091, Blast_Score=87, Evalue=8e-18,
Organism=Homo sapiens, GI8923143, Length=132, Percent_Identity=34.0909090909091, Blast_Score=87, Evalue=1e-17,
Organism=Homo sapiens, GI154813199, Length=153, Percent_Identity=35.9477124183007, Blast_Score=86, Evalue=2e-17,
Organism=Homo sapiens, GI93141020, Length=162, Percent_Identity=30.2469135802469, Blast_Score=85, Evalue=3e-17,
Organism=Homo sapiens, GI4758496, Length=162, Percent_Identity=30.2469135802469, Blast_Score=85, Evalue=3e-17,
Organism=Homo sapiens, GI93141018, Length=162, Percent_Identity=30.2469135802469, Blast_Score=85, Evalue=3e-17,
Organism=Escherichia coli, GI1787283, Length=174, Percent_Identity=37.9310344827586, Blast_Score=104, Evalue=3e-24,
Organism=Caenorhabditis elegans, GI17538214, Length=133, Percent_Identity=43.609022556391, Blast_Score=94, Evalue=4e-20,
Organism=Drosophila melanogaster, GI24586353, Length=133, Percent_Identity=29.3233082706767, Blast_Score=65, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002589
- InterPro:   IPR022942 [H]

Pfam domain/function: PF01661 Macro [H]

EC number: NA

Molecular weight: Translated: 19115; Mature: 19115

Theoretical pI: Translated: 6.50; Mature: 6.50

Prosite motif: PS51154 MACRO

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQARFAELTVETRVGDIAAQGDCDAVVNAANAQLMPGGGVAGALHRAAGPELAEACRPLA
CCCHHHHHHHHHHHCCHHCCCCHHHHHHCCCCEECCCCCHHHHHHHHCCHHHHHHHCCCC
PIQPGQAVITAGFGLPNRHVIHCLGPVYGVDEPGEQLLAACYRNALHRAEEHELTRVAMP
CCCCCCEEEEECCCCCCCHHHEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALSTGAFGFPMERAARVAIGTLQRTAAQLRYVRHVRFVLADAAAQQIHDHVIQELAENTS
HHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
G
C
>Mature Secondary Structure
MQARFAELTVETRVGDIAAQGDCDAVVNAANAQLMPGGGVAGALHRAAGPELAEACRPLA
CCCHHHHHHHHHHHCCHHCCCCHHHHHHCCCCEECCCCCHHHHHHHHCCHHHHHHHCCCC
PIQPGQAVITAGFGLPNRHVIHCLGPVYGVDEPGEQLLAACYRNALHRAEEHELTRVAMP
CCCCCCEEEEECCCCCCCHHHEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALSTGAFGFPMERAARVAIGTLQRTAAQLRYVRHVRFVLADAAAQQIHDHVIQELAENTS
HHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
G
C

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11823852 [H]