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The map label for this gene is yciO [H]

Identifier: 121997386

GI number: 121997386

Start: 661758

End: 662384

Strand: Reverse

Name: yciO [H]

Synonym: Hhal_0585

Alternate gene names: 121997386

Gene position: 662384-661758 (Counterclockwise)

Preceding gene: 121997388

Following gene: 121997385

Centisome position: 24.73

GC content: 64.91

Gene sequence:

>627_bases
ATGGCGCAGTACTTTGAAGTCCATCCGGAGACGCCCCAACAGCGCCTGATCAACCAGGCCGTGCAGATCCTCGCCGATGG
TGGCGTTATCGCCTACCCGACGGATTCGAGCTACGCCCTCGGGTGTCGCCTCGGCGACAAGGCGGCCCTCGACCGCATCC
GCGAGATCCGGCGTCTGGACAATAGCCATAACTTCACCATGGCGTGCAAGGATCTCAAGGATATCGGCACCTACGCCAAG
ATGGAAAACTACGCCTATCGCCTGCTCAAGTCCCATACCCCGGGGCCGTACACCTTCATCCTGCGGGCGACCTCCGAAGT
CCCCCGGCGCTTGCAGCACCCCAAGCGCAAGACCATCGGCATCCGCGTGCCGGATCACCCGGCGAGCCGGGCGTTGCTCA
ACACCCTCGGTGAGCCCCTGATGAGCGTCACGCTGCAAATGCCCGGTGACGACATGCCGCTCAATGACCCCGAGGCGATC
CAGGAGCGCATCGGCAAGCTGATCGATGCCGTCGTGGCCGGCGGTCCCACCGGCGGTGGCGTCAGTACCGTGATCGATCT
CACCGGCGAGGCCGCCGAGGTCATCCGCGAAGGGGTCGGCGATACCCGCGTCTTCCAGGGCGCTTGA

Upstream 100 bases:

>100_bases
GCGTAATACATGGCTCGTTACCTTATCGCTCCGAAAAGGGGTCCGGTACAATGAAGCCGTGCCCCGGGATGGCCGGGGCG
TGTCCACGGGAGAGGAAGTC

Downstream 100 bases:

>100_bases
GCGCCCCGGCTCGAATCGCGAATCAACGATAAGGAGCGTTGCTTGGCTAACATCAACCAACGACCCAGCCGCGTCCTGTC
GGGCATGCGCCCGACGGGAC

Product: Sua5/YciO/YrdC/YwlC family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 208; Mature: 207

Protein sequence:

>208_residues
MAQYFEVHPETPQQRLINQAVQILADGGVIAYPTDSSYALGCRLGDKAALDRIREIRRLDNSHNFTMACKDLKDIGTYAK
MENYAYRLLKSHTPGPYTFILRATSEVPRRLQHPKRKTIGIRVPDHPASRALLNTLGEPLMSVTLQMPGDDMPLNDPEAI
QERIGKLIDAVVAGGPTGGGVSTVIDLTGEAAEVIREGVGDTRVFQGA

Sequences:

>Translated_208_residues
MAQYFEVHPETPQQRLINQAVQILADGGVIAYPTDSSYALGCRLGDKAALDRIREIRRLDNSHNFTMACKDLKDIGTYAK
MENYAYRLLKSHTPGPYTFILRATSEVPRRLQHPKRKTIGIRVPDHPASRALLNTLGEPLMSVTLQMPGDDMPLNDPEAI
QERIGKLIDAVVAGGPTGGGVSTVIDLTGEAAEVIREGVGDTRVFQGA
>Mature_207_residues
AQYFEVHPETPQQRLINQAVQILADGGVIAYPTDSSYALGCRLGDKAALDRIREIRRLDNSHNFTMACKDLKDIGTYAKM
ENYAYRLLKSHTPGPYTFILRATSEVPRRLQHPKRKTIGIRVPDHPASRALLNTLGEPLMSVTLQMPGDDMPLNDPEAIQ
ERIGKLIDAVVAGGPTGGGVSTVIDLTGEAAEVIREGVGDTRVFQGA

Specific function: Unknown

COG id: COG0009

COG function: function code J; Putative translation factor (SUA5)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 YrdC-like domain [H]

Homologues:

Organism=Escherichia coli, GI87081864, Length=205, Percent_Identity=54.6341463414634, Blast_Score=248, Evalue=3e-67,
Organism=Escherichia coli, GI2367210, Length=192, Percent_Identity=27.6041666666667, Blast_Score=67, Evalue=8e-13,
Organism=Drosophila melanogaster, GI78707274, Length=186, Percent_Identity=28.494623655914, Blast_Score=73, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017945
- InterPro:   IPR004388
- InterPro:   IPR006070 [H]

Pfam domain/function: PF01300 Sua5_yciO_yrdC [H]

EC number: NA

Molecular weight: Translated: 22751; Mature: 22620

Theoretical pI: Translated: 7.06; Mature: 7.06

Prosite motif: PS51163 YRDC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAQYFEVHPETPQQRLINQAVQILADGGVIAYPTDSSYALGCRLGDKAALDRIREIRRLD
CCCCEECCCCCHHHHHHHHHHHHHHCCCEEEECCCCCEEEEECCCCHHHHHHHHHHHHHC
NSHNFTMACKDLKDIGTYAKMENYAYRLLKSHTPGPYTFILRATSEVPRRLQHPKRKTIG
CCCCEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHCCCCCEEE
IRVPDHPASRALLNTLGEPLMSVTLQMPGDDMPLNDPEAIQERIGKLIDAVVAGGPTGGG
EECCCCHHHHHHHHHHHHHHHHEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCC
VSTVIDLTGEAAEVIREGVGDTRVFQGA
HHHHEECCCHHHHHHHHCCCCCCEECCC
>Mature Secondary Structure 
AQYFEVHPETPQQRLINQAVQILADGGVIAYPTDSSYALGCRLGDKAALDRIREIRRLD
CCCEECCCCCHHHHHHHHHHHHHHCCCEEEECCCCCEEEEECCCCHHHHHHHHHHHHHC
NSHNFTMACKDLKDIGTYAKMENYAYRLLKSHTPGPYTFILRATSEVPRRLQHPKRKTIG
CCCCEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHCCCCCEEE
IRVPDHPASRALLNTLGEPLMSVTLQMPGDDMPLNDPEAIQERIGKLIDAVVAGGPTGGG
EECCCCHHHHHHHHHHHHHHHHEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCC
VSTVIDLTGEAAEVIREGVGDTRVFQGA
HHHHEECCCHHHHHHHHCCCCCCEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]