| Definition | Verminephrobacter eiseniae EF01-2 chromosome, complete genome. |
|---|---|
| Accession | NC_008786 |
| Length | 5,566,749 |
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The map label for this gene is 121611702
Identifier: 121611702
GI number: 121611702
Start: 5297533
End: 5298066
Strand: Direct
Name: 121611702
Synonym: Veis_4799
Alternate gene names: NA
Gene position: 5297533-5298066 (Clockwise)
Preceding gene: 121611701
Following gene: 121611711
Centisome position: 95.16
GC content: 69.1
Gene sequence:
>534_bases ATGACACTCCCCCCGATTCGCCGGGTCGTCACCGGCATCAACCCGCAAGGCGAGTCCGCATTCATCGAGGACGGGCCTGC TCCCGCAGTGCGCATGGTGCCGCAGCGCCCCGGCTATCGCGTGACCAATCTGTGGTGCACCGGCGCAGCGCCAGCCCCCG TGGACGCTGCCGACGCCATTGCCGGGCACCAGGGCGTAGCGCCGGCCAAGGGCGGCACCGTGCTGCGCATCATCGACTTC CCGCCCGAGCCGCAGGACCCGCAAGCGCTCGAACACATGCTGCAAGCCACCTTCGCCAGCATGTACCGCGACGCACGACA TGCGCCGCGCGCCGGCGAGCATCCCGGCATGCACTGCACGCGCACCGTGGACTATGCGCTGATGCTGGAAGGCGAGTTGC TGGCCATCATGGAAAGCAGTCAGACCACGCTGCGCGCGGGCGATGTGCTGATCCAGCGCGGCACCCGCCACGCATGGGCC AACCGTTCGGGCCGCCCGGCGCGCATTGCCTTCGTTTTGGTCGATGGCCTCTGA
Upstream 100 bases:
>100_bases CGGCCTACCTCGATGCAGCGCAGTTCAAGGCCCGCATCCTGCGCACTTACCAAGCCAACGCCGAACTGTTGCCCCACCTC GACCTGGAAAGGCACTGAAG
Downstream 100 bases:
>100_bases TGCGCCGCCCCGCCAATGGACGACCCATGGGGACTGCGCATGGCCTGTGCCGCCCTGCAAATGACGGCGCATGGCACCGC GCCTTGCGCGCCAGGGCGGC
Product: cupin 2 domain-containing protein
Products: NA
Alternate protein names: Cupin 2 Conserved Barrel Domain Protein; Cupin 2 Barrel; Transcriptional Regulator Protein; Cupin Superfamily Protein; Cupin Domain-Containing Protein
Number of amino acids: Translated: 177; Mature: 176
Protein sequence:
>177_residues MTLPPIRRVVTGINPQGESAFIEDGPAPAVRMVPQRPGYRVTNLWCTGAAPAPVDAADAIAGHQGVAPAKGGTVLRIIDF PPEPQDPQALEHMLQATFASMYRDARHAPRAGEHPGMHCTRTVDYALMLEGELLAIMESSQTTLRAGDVLIQRGTRHAWA NRSGRPARIAFVLVDGL
Sequences:
>Translated_177_residues MTLPPIRRVVTGINPQGESAFIEDGPAPAVRMVPQRPGYRVTNLWCTGAAPAPVDAADAIAGHQGVAPAKGGTVLRIIDF PPEPQDPQALEHMLQATFASMYRDARHAPRAGEHPGMHCTRTVDYALMLEGELLAIMESSQTTLRAGDVLIQRGTRHAWA NRSGRPARIAFVLVDGL >Mature_176_residues TLPPIRRVVTGINPQGESAFIEDGPAPAVRMVPQRPGYRVTNLWCTGAAPAPVDAADAIAGHQGVAPAKGGTVLRIIDFP PEPQDPQALEHMLQATFASMYRDARHAPRAGEHPGMHCTRTVDYALMLEGELLAIMESSQTTLRAGDVLIQRGTRHAWAN RSGRPARIAFVLVDGL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19047; Mature: 18916
Theoretical pI: Translated: 7.67; Mature: 7.67
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 4.0 %Met (Translated Protein) 5.1 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTLPPIRRVVTGINPQGESAFIEDGPAPAVRMVPQRPGYRVTNLWCTGAAPAPVDAADAI CCCCHHHHHHHCCCCCCCEEEECCCCCCEEEECCCCCCCEEEEEEECCCCCCCCCHHHHH AGHQGVAPAKGGTVLRIIDFPPEPQDPQALEHMLQATFASMYRDARHAPRAGEHPGMHCT CCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEE RTVDYALMLEGELLAIMESSQTTLRAGDVLIQRGTRHAWANRSGRPARIAFVLVDGL EEEEEEEEECCEEEEEEECCCCEEHHHHHHEECCCCCCCCCCCCCCEEEEEEEEECC >Mature Secondary Structure TLPPIRRVVTGINPQGESAFIEDGPAPAVRMVPQRPGYRVTNLWCTGAAPAPVDAADAI CCCHHHHHHHCCCCCCCEEEECCCCCCEEEECCCCCCCEEEEEEECCCCCCCCCHHHHH AGHQGVAPAKGGTVLRIIDFPPEPQDPQALEHMLQATFASMYRDARHAPRAGEHPGMHCT CCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEE RTVDYALMLEGELLAIMESSQTTLRAGDVLIQRGTRHAWANRSGRPARIAFVLVDGL EEEEEEEEECCEEEEEEECCCCEEHHHHHHEECCCCCCCCCCCCCCEEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA