| Definition | Verminephrobacter eiseniae EF01-2 chromosome, complete genome. |
|---|---|
| Accession | NC_008786 |
| Length | 5,566,749 |
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The map label for this gene is 121611699
Identifier: 121611699
GI number: 121611699
Start: 5294995
End: 5295903
Strand: Direct
Name: 121611699
Synonym: Veis_4796
Alternate gene names: NA
Gene position: 5294995-5295903 (Clockwise)
Preceding gene: 121611698
Following gene: 121611701
Centisome position: 95.12
GC content: 69.75
Gene sequence:
>909_bases ATGCATGCCCACGACGACCGCGACCAGTTTGCCCCGCCCCGCCCGCCGGCGCATCTGCGCGCAATCGTGCTGTCCGTGCT GGTGCATGCGCTGCTGATTGGCGCGCTCACCTGGGGCGTGCACTGGAAAAGCAGCACCAACCCGCCCGCCGTCACCGCCG AACTATGGGCGGCTGCGCCCCGGCAGGCCGCCGTCGAACCCGCCGCGCCGCCAGCAGTGCCGCCAGTAGTCCCGCCAGTA GCGCCGGCTGCGGCGCCCACGGCACGGCCGGACACGGCGCCCGCAGCGCAGCCCCCCGACACGCGCGTGGCCGACATCGC CATCGAACGCGAGAAAAAGCGCCAAGAACGCGAGCGCCAGGAAGCGCAGCGCCGCGAGCGCCTGCAAAAGAAAAAAGAAG CCGAGCAGCGCGCAAAGCAGTTGGCCGAACAGGAAAAGCAGAAGAAACTCGCGCAAGACAAGCTCCGGGCCGAGCAAGCC GCCAAGAGCAAAGCGCAGGCACAGGCACAGGCACAGGCACAGGAGCAGGAGCAACGACTGGCCCGGCAGCGCGAGGACAA TCTGCGGCGCCTGCAAGGACTGGCCGGGGCCAGCGGGGGTGACAATGGCGCCGCCTTGCGCAGCGCCGGCCCGCCAGGCC CCTCGGGCAGCTACAGCGCCAAGGTCAGCGCCAGGGTCAGGCCAAACATCGTGTACCCCGACGCCATCGCGGGCAACCCG CGCGCCGAGGTCGAAGTGCGTCTGTCGCCCGACGGCACCATCGTCGGCAAACGGCTGCTGCAACCGAGCACCAGCAAAGC CTGGGATGACGCCGTGCTGCGGGCGCTGGACAAAACCGAAACGCTGCCGCGCGATGTGGACGGACGGGTGCCCCCGTCAT TGGTCATCGGATTCCGGCCGCAGGACTGA
Upstream 100 bases:
>100_bases AAGGCCATGGATGCGCTGCAAAAAGCCGGCGTGCAACGGGTCGGACTGCTCGTGCAGCAAGGCGGTTGAACCGAACCCGC CCCGTGTAGCTCAGACGCCC
Downstream 100 bases:
>100_bases GCGCCTGGGGGCTACCCGGGTGGGGGCGACGAAATGCCGCGTTGCGCGGTCATCGGCCAGACCGCGCGGCGCGCAGTCCA TCGGGGCATCGGGGCTGGCA
Product: TonB domain-containing protein
Products: NA
Alternate protein names: Protein lA; NB-Like; NB C-Terminal; NB-Like Protein; Membrane Spanning Protein In lA-TolQ-TolR Complex; LA-Related Transport Transmembrane Protein; NB Domain-Containing Protein; Protein la; TOLA-Like Transport Transmembrane Protein
Number of amino acids: Translated: 302; Mature: 302
Protein sequence:
>302_residues MHAHDDRDQFAPPRPPAHLRAIVLSVLVHALLIGALTWGVHWKSSTNPPAVTAELWAAAPRQAAVEPAAPPAVPPVVPPV APAAAPTARPDTAPAAQPPDTRVADIAIEREKKRQERERQEAQRRERLQKKKEAEQRAKQLAEQEKQKKLAQDKLRAEQA AKSKAQAQAQAQAQEQEQRLARQREDNLRRLQGLAGASGGDNGAALRSAGPPGPSGSYSAKVSARVRPNIVYPDAIAGNP RAEVEVRLSPDGTIVGKRLLQPSTSKAWDDAVLRALDKTETLPRDVDGRVPPSLVIGFRPQD
Sequences:
>Translated_302_residues MHAHDDRDQFAPPRPPAHLRAIVLSVLVHALLIGALTWGVHWKSSTNPPAVTAELWAAAPRQAAVEPAAPPAVPPVVPPV APAAAPTARPDTAPAAQPPDTRVADIAIEREKKRQERERQEAQRRERLQKKKEAEQRAKQLAEQEKQKKLAQDKLRAEQA AKSKAQAQAQAQAQEQEQRLARQREDNLRRLQGLAGASGGDNGAALRSAGPPGPSGSYSAKVSARVRPNIVYPDAIAGNP RAEVEVRLSPDGTIVGKRLLQPSTSKAWDDAVLRALDKTETLPRDVDGRVPPSLVIGFRPQD >Mature_302_residues MHAHDDRDQFAPPRPPAHLRAIVLSVLVHALLIGALTWGVHWKSSTNPPAVTAELWAAAPRQAAVEPAAPPAVPPVVPPV APAAAPTARPDTAPAAQPPDTRVADIAIEREKKRQERERQEAQRRERLQKKKEAEQRAKQLAEQEKQKKLAQDKLRAEQA AKSKAQAQAQAQAQEQEQRLARQREDNLRRLQGLAGASGGDNGAALRSAGPPGPSGSYSAKVSARVRPNIVYPDAIAGNP RAEVEVRLSPDGTIVGKRLLQPSTSKAWDDAVLRALDKTETLPRDVDGRVPPSLVIGFRPQD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 32671; Mature: 32671
Theoretical pI: Translated: 10.74; Mature: 10.74
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.3 %Met (Translated Protein) 0.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.3 %Met (Mature Protein) 0.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHAHDDRDQFAPPRPPAHLRAIVLSVLVHALLIGALTWGVHWKSSTNPPAVTAELWAAAP CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCCHHHHHHHCCC RQAAVEPAAPPAVPPVVPPVAPAAAPTARPDTAPAAQPPDTRVADIAIEREKKRQERERQ HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH EAQRRERLQKKKEAEQRAKQLAEQEKQKKLAQDKLRAEQAAKSKAQAQAQAQAQEQEQRL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ARQREDNLRRLQGLAGASGGDNGAALRSAGPPGPSGSYSAKVSARVRPNIVYPDAIAGNP HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEECCCCCCCCC RAEVEVRLSPDGTIVGKRLLQPSTSKAWDDAVLRALDKTETLPRDVDGRVPPSLVIGFRP CCEEEEEECCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCC QD CC >Mature Secondary Structure MHAHDDRDQFAPPRPPAHLRAIVLSVLVHALLIGALTWGVHWKSSTNPPAVTAELWAAAP CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCCHHHHHHHCCC RQAAVEPAAPPAVPPVVPPVAPAAAPTARPDTAPAAQPPDTRVADIAIEREKKRQERERQ HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH EAQRRERLQKKKEAEQRAKQLAEQEKQKKLAQDKLRAEQAAKSKAQAQAQAQAQEQEQRL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ARQREDNLRRLQGLAGASGGDNGAALRSAGPPGPSGSYSAKVSARVRPNIVYPDAIAGNP HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEECCCCCCCCC RAEVEVRLSPDGTIVGKRLLQPSTSKAWDDAVLRALDKTETLPRDVDGRVPPSLVIGFRP CCEEEEEECCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCC QD CC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA