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The map label for this gene is yvrC [H]

Identifier: 121611678

GI number: 121611678

Start: 5269617

End: 5270552

Strand: Direct

Name: yvrC [H]

Synonym: Veis_4774

Alternate gene names: 121611678

Gene position: 5269617-5270552 (Clockwise)

Preceding gene: 121611677

Following gene: 121611679

Centisome position: 94.66

GC content: 73.61

Gene sequence:

>936_bases
ATGAACCCGGCCCCTGTGCGCCGCCTGCGGGCCATGGCGCTGCTGGCCGTGGCACTGCTGGCCGTGTCTGCTCTGGCGCG
GGCGCAGCCGGTGCAGATCGAGGACGACCGGGGCCGCCTGGTGTCGCTGCCGCGCCCGCCGCAGCGCATCGTGAGCCTGC
TGCCTTCGCTGACCGAAAGCCTGTGCGCGCTGGGGCAATGCCAGCGCATCGTCGGGGTCGACCGCCATTCCAACTGGCCC
GAGGCCGTGACCGGCAAACTGCCCCGCCTGGGCAGCGGTCTGGACCCCGGCATCGAAGCCGTCGTCGCGCTGCGGCCCGA
CGTGGTGCTGCTGGCCGGCAGTTCGCGCGCCAGCGAGCGGCTCCAGGCGCTGGGCCTGGCCGTGGTGGCGCTGGAGCCCA
AGACCCACGCCGATGTGCACCGGGTGCTGGGCCTGGTCAGCGACCTGCTCGGCGTGCCGCGCGCGCAAGGGTCCGACCGG
CTGTGGCGCGAGATCGATGCCGGCATACAGGCAGCGGCCCAATCGCTGCCGCCCCGGGCCAGGAACGCGCGCGTGTATTT
CGAGGCCGGCCGTGGGCCTTATGCGGCGGGCGCGGCCTCGTTCATCGGCGAGACGCTGACCCGGCTGGGTGCGCGCAATG
TGGTGCCGGCCGCGCTCGGACCATTCCCGCGCCTGAACCCGGAGTTCGTGCTGCGCGCCGACCCCGACATCATCATGATC
GGCAGCCGCGGCATGCAGGCCATGCTGTCGTACCCCGGCTGGGCCGGCCTGCGCGCCGTCCGCGAGCAACGCATCTGCGT
CTTCAGCCCGGGCCAGTCCGACATGCTGGTGCGCCCCGGCCCGCGCATGGCCGAGGCGGCCCGCATCATGGCCCGCTGCC
TGGCCGACAAAGCGCATGGGGCGCACGGAGCGCACGAGGCGCACGAGGCTCGATAG

Upstream 100 bases:

>100_bases
GCGGCCCGGCGCGGCGGCCGATGCAAGTGCGCGCGCTGCCCGCGCTGCCCGCGCTGCCCGCGCTGCCCGCGCTGCCCGCG
CTGCGGCAGCACCCGTGCCG

Downstream 100 bases:

>100_bases
TGCAGACCAACGCCAACCCGCAGACCGCTGCGGCCCGGCCGGCATCGGGTGCCACCCCGCCGCCGGGCGCAACCCACCAG
CGCGCGCTGCGCTGTGGCGC

Product: periplasmic-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 311; Mature: 311

Protein sequence:

>311_residues
MNPAPVRRLRAMALLAVALLAVSALARAQPVQIEDDRGRLVSLPRPPQRIVSLLPSLTESLCALGQCQRIVGVDRHSNWP
EAVTGKLPRLGSGLDPGIEAVVALRPDVVLLAGSSRASERLQALGLAVVALEPKTHADVHRVLGLVSDLLGVPRAQGSDR
LWREIDAGIQAAAQSLPPRARNARVYFEAGRGPYAAGAASFIGETLTRLGARNVVPAALGPFPRLNPEFVLRADPDIIMI
GSRGMQAMLSYPGWAGLRAVREQRICVFSPGQSDMLVRPGPRMAEAARIMARCLADKAHGAHGAHEAHEAR

Sequences:

>Translated_311_residues
MNPAPVRRLRAMALLAVALLAVSALARAQPVQIEDDRGRLVSLPRPPQRIVSLLPSLTESLCALGQCQRIVGVDRHSNWP
EAVTGKLPRLGSGLDPGIEAVVALRPDVVLLAGSSRASERLQALGLAVVALEPKTHADVHRVLGLVSDLLGVPRAQGSDR
LWREIDAGIQAAAQSLPPRARNARVYFEAGRGPYAAGAASFIGETLTRLGARNVVPAALGPFPRLNPEFVLRADPDIIMI
GSRGMQAMLSYPGWAGLRAVREQRICVFSPGQSDMLVRPGPRMAEAARIMARCLADKAHGAHGAHEAHEAR
>Mature_311_residues
MNPAPVRRLRAMALLAVALLAVSALARAQPVQIEDDRGRLVSLPRPPQRIVSLLPSLTESLCALGQCQRIVGVDRHSNWP
EAVTGKLPRLGSGLDPGIEAVVALRPDVVLLAGSSRASERLQALGLAVVALEPKTHADVHRVLGLVSDLLGVPRAQGSDR
LWREIDAGIQAAAQSLPPRARNARVYFEAGRGPYAAGAASFIGETLTRLGARNVVPAALGPFPRLNPEFVLRADPDIIMI
GSRGMQAMLSYPGWAGLRAVREQRICVFSPGQSDMLVRPGPRMAEAARIMARCLADKAHGAHGAHEAHEAR

Specific function: Probably part of an ABC transporter complex [H]

COG id: COG0614

COG function: function code P; ABC-type Fe3+-hydroxamate transport system, periplasmic component

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Fe/B12 periplasmic-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002491 [H]

Pfam domain/function: PF01497 Peripla_BP_2 [H]

EC number: NA

Molecular weight: Translated: 33176; Mature: 33176

Theoretical pI: Translated: 11.09; Mature: 11.09

Prosite motif: PS50983 FE_B12_PBP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNPAPVRRLRAMALLAVALLAVSALARAQPVQIEDDRGRLVSLPRPPQRIVSLLPSLTES
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCEEECCCCHHHHHHHHHHHHHH
LCALGQCQRIVGVDRHSNWPEAVTGKLPRLGSGLDPGIEAVVALRPDVVLLAGSSRASER
HHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCCCHHHHHHHEECCCEEEEECCCHHHHH
LQALGLAVVALEPKTHADVHRVLGLVSDLLGVPRAQGSDRLWREIDAGIQAAAQSLPPRA
HHHHCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC
RNARVYFEAGRGPYAAGAASFIGETLTRLGARNVVPAALGPFPRLNPEFVLRADPDIIMI
CCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCHHCCCCCCCCCCEEEECCCCEEEE
GSRGMQAMLSYPGWAGLRAVREQRICVFSPGQSDMLVRPGPRMAEAARIMARCLADKAHG
CCCCHHHHHCCCCHHHHHHHHHCCEEEECCCCCCEEECCCCCHHHHHHHHHHHHHHHHCC
AHGAHEAHEAR
CCCCCHHHCCC
>Mature Secondary Structure
MNPAPVRRLRAMALLAVALLAVSALARAQPVQIEDDRGRLVSLPRPPQRIVSLLPSLTES
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCEEECCCCHHHHHHHHHHHHHH
LCALGQCQRIVGVDRHSNWPEAVTGKLPRLGSGLDPGIEAVVALRPDVVLLAGSSRASER
HHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCCCHHHHHHHEECCCEEEEECCCHHHHH
LQALGLAVVALEPKTHADVHRVLGLVSDLLGVPRAQGSDRLWREIDAGIQAAAQSLPPRA
HHHHCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC
RNARVYFEAGRGPYAAGAASFIGETLTRLGARNVVPAALGPFPRLNPEFVLRADPDIIMI
CCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCHHCCCCCCCCCCEEEECCCCEEEE
GSRGMQAMLSYPGWAGLRAVREQRICVFSPGQSDMLVRPGPRMAEAARIMARCLADKAHG
CCCCHHHHHCCCCHHHHHHHHHCCEEEECCCCCCEEECCCCCHHHHHHHHHHHHHHHHCC
AHGAHEAHEAR
CCCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9639930; 9384377 [H]