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The map label for this gene is rsmD [H]

Identifier: 121611668

GI number: 121611668

Start: 5259000

End: 5259956

Strand: Direct

Name: rsmD [H]

Synonym: Veis_4764

Alternate gene names: 121611668

Gene position: 5259000-5259956 (Clockwise)

Preceding gene: 121611667

Following gene: 121611669

Centisome position: 94.47

GC content: 74.19

Gene sequence:

>957_bases
ATGAGCGCCGCACGGCCGCCCGAAGGCGCTCATACCGTAGCCGAAGGCGAAGGTGCTCCATCCTTCGCCGCACGGCCGCC
CGAAGGCACTCATACCGCAGCCGAAGGCGAAGGTGCCTCATCGATCGCCGCACGGCCGCCCGAAGGCGCTCATACCGCAG
CCGAAGGCGGAGGCTCTCCAGTGCGCCGCGCCACGCCGCGCCGGCGGGCCCTGCCCGGTGGCCGCCCGGGCCAGGCCCCT
GCTGCCACAGGCAGCAGGCCAAAGGTTCCTGCCGCAGACCGCAAATCGACGGCACCGGCCAAAGGCCGCAAACCAGGCGC
TGCACCGGCCAAAGGCCGTCCACCCGGCGCCACCTCCGATGCCCCCGGCGTCATCCGCATCATCGGCGGGCGATGGAAGC
GCACCCGCTTGCCCGTGGCCCGCCACCCCGGCCTGCGCCCCACGCCCGAGCGCGTGCGTGCCGCCTTGTTCAACTGGCTC
GGGCAGGACCTGGCTGGCTGGCGCTGCCTGGATGCCTTTGCCGGCACCGGCGCGCTGGGCCTGGAAGCCGCCTCGCGTGG
CGCGGCGGCGGTGCAGTTGATCGACAGCGACGCCGCGCTGGTGGCCCGGTTGCACGGCCTGCAGCAGCGCCTGCAAGCCG
GCGCTGCAGATGAACGGCACCTGCCGGCCTGCGCCCTGCAGATACGGCGCGGCGATGGCATCGCCGCGCTGCGCCAGGCG
GCGCCCGCCAGCATCGATCTGGTGCTGCTCGACCCGCCGTTCGACAGCGCGCTGTTCGAGCCGGCGCTGCAATGCGCAGC
CCGGGCCGTGGCGGCGACTGGCTTCGTCTACCTGGAGGCGCCCCGCGCCTGGAGCGACGCGCAACTGGCCCCGCTCGGGC
TGGTGCTGCAGCGCCATCTGAAAGCCGGCGCGGTGCACGCGCACCTGCTGCGCCCCGGCCCCGCAGGCCCTGCATAA

Upstream 100 bases:

>100_bases
CGAGCCAGGTGCAGGCCCTCACCGTCGCCGACGTGCGCGCCGCAATGGCCCGCAAACTGCAACCCGGGCGCATGGTGACC
GTGGTGGTCGGTGGCCGGCC

Downstream 100 bases:

>100_bases
TGCGCGCACGCGGCCCGGCAGCGGCCAGCGCCCGATTGCGCCGCCCCACAGGAAGGAGACAAGCAGCCATGGCCCAGAAC
CTGCTCGCCGTTTACCCCGG

Product: hypothetical protein

Products: NA

Alternate protein names: 16S rRNA m2G966 methyltransferase; rRNA (guanine-N(2)-)-methyltransferase [H]

Number of amino acids: Translated: 318; Mature: 317

Protein sequence:

>318_residues
MSAARPPEGAHTVAEGEGAPSFAARPPEGTHTAAEGEGASSIAARPPEGAHTAAEGGGSPVRRATPRRRALPGGRPGQAP
AATGSRPKVPAADRKSTAPAKGRKPGAAPAKGRPPGATSDAPGVIRIIGGRWKRTRLPVARHPGLRPTPERVRAALFNWL
GQDLAGWRCLDAFAGTGALGLEAASRGAAAVQLIDSDAALVARLHGLQQRLQAGAADERHLPACALQIRRGDGIAALRQA
APASIDLVLLDPPFDSALFEPALQCAARAVAATGFVYLEAPRAWSDAQLAPLGLVLQRHLKAGAVHAHLLRPGPAGPA

Sequences:

>Translated_318_residues
MSAARPPEGAHTVAEGEGAPSFAARPPEGTHTAAEGEGASSIAARPPEGAHTAAEGGGSPVRRATPRRRALPGGRPGQAP
AATGSRPKVPAADRKSTAPAKGRKPGAAPAKGRPPGATSDAPGVIRIIGGRWKRTRLPVARHPGLRPTPERVRAALFNWL
GQDLAGWRCLDAFAGTGALGLEAASRGAAAVQLIDSDAALVARLHGLQQRLQAGAADERHLPACALQIRRGDGIAALRQA
APASIDLVLLDPPFDSALFEPALQCAARAVAATGFVYLEAPRAWSDAQLAPLGLVLQRHLKAGAVHAHLLRPGPAGPA
>Mature_317_residues
SAARPPEGAHTVAEGEGAPSFAARPPEGTHTAAEGEGASSIAARPPEGAHTAAEGGGSPVRRATPRRRALPGGRPGQAPA
ATGSRPKVPAADRKSTAPAKGRKPGAAPAKGRPPGATSDAPGVIRIIGGRWKRTRLPVARHPGLRPTPERVRAALFNWLG
QDLAGWRCLDAFAGTGALGLEAASRGAAAVQLIDSDAALVARLHGLQQRLQAGAADERHLPACALQIRRGDGIAALRQAA
PASIDLVLLDPPFDSALFEPALQCAARAVAATGFVYLEAPRAWSDAQLAPLGLVLQRHLKAGAVHAHLLRPGPAGPA

Specific function: Specifically methylates the guanosine in position 966 of 16S rRNA in the assembled 30S particle [H]

COG id: COG0742

COG function: function code L; N6-adenine-specific methylase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily. RsmD family [H]

Homologues:

Organism=Escherichia coli, GI1789875, Length=160, Percent_Identity=40.625, Blast_Score=104, Evalue=8e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002052
- InterPro:   IPR004398 [H]

Pfam domain/function: PF03602 Cons_hypoth95 [H]

EC number: =2.1.1.171 [H]

Molecular weight: Translated: 32441; Mature: 32310

Theoretical pI: Translated: 11.63; Mature: 11.63

Prosite motif: PS00092 N6_MTASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
0.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAARPPEGAHTVAEGEGAPSFAARPPEGTHTAAEGEGASSIAARPPEGAHTAAEGGGSP
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
VRRATPRRRALPGGRPGQAPAATGSRPKVPAADRKSTAPAKGRKPGAAPAKGRPPGATSD
HHHCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
APGVIRIIGGRWKRTRLPVARHPGLRPTPERVRAALFNWLGQDLAGWRCLDAFAGTGALG
CCCEEEEECCCCHHCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCHH
LEAASRGAAAVQLIDSDAALVARLHGLQQRLQAGAADERHLPACALQIRRGDGIAALRQA
HHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHEEEECCCCHHHHHHC
APASIDLVLLDPPFDSALFEPALQCAARAVAATGFVYLEAPRAWSDAQLAPLGLVLQRHL
CCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCEEEEECCCCCCCCCHHHHHHHHHHHH
KAGAVHAHLLRPGPAGPA
HHCCCEEEEECCCCCCCC
>Mature Secondary Structure 
SAARPPEGAHTVAEGEGAPSFAARPPEGTHTAAEGEGASSIAARPPEGAHTAAEGGGSP
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
VRRATPRRRALPGGRPGQAPAATGSRPKVPAADRKSTAPAKGRKPGAAPAKGRPPGATSD
HHHCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
APGVIRIIGGRWKRTRLPVARHPGLRPTPERVRAALFNWLGQDLAGWRCLDAFAGTGALG
CCCEEEEECCCCHHCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCHH
LEAASRGAAAVQLIDSDAALVARLHGLQQRLQAGAADERHLPACALQIRRGDGIAALRQA
HHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHEEEECCCCHHHHHHC
APASIDLVLLDPPFDSALFEPALQCAARAVAATGFVYLEAPRAWSDAQLAPLGLVLQRHL
CCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCEEEEECCCCCCCCCHHHHHHHHHHHH
KAGAVHAHLLRPGPAGPA
HHCCCEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]