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The map label for this gene is yliD [C]

Identifier: 121611630

GI number: 121611630

Start: 5212104

End: 5212925

Strand: Direct

Name: yliD [C]

Synonym: Veis_4724

Alternate gene names: 121611630

Gene position: 5212104-5212925 (Clockwise)

Preceding gene: 121611629

Following gene: 121611631

Centisome position: 93.63

GC content: 65.09

Gene sequence:

>822_bases
ATGAAAAAATTTTGCACACCGCAAGCGCTGCTCGGTCTGCTGCTCATCGCGCTCATGCTGGGGGCGGCGCTGCTGGCCTT
GGTGTGGACGCCGCACGATCCGCTGAAGATCAGTTTCTCGGCGCGCTTGCAGCCACCCGGCGCCGAATGGCCGCTGGGCA
CGGACGAATTTGGCCGCGATGAACTCTCGCGCCTGATGTCGGGCGCTGCCAACAGTCTGTGGATCAGCTTGCTCACCGTG
CTGCTGGCCATCGTCGCCGGCACCGGCATCGGTGTCGTCACCGGCTTCGTGCGCGGCTGGCCGGACCGTATCGTGATGGC
GTTCATCAATGCGCTGCTGGCCTTTCCCGGCCTGTTGCTGGCGCTGGCCCTGCTGGCCGTGCTCGGCGCCAACCAGTACG
GCATCATCCTCGCGCTGGGCCTGGCCTATACCCCATCGGTCGCGCGCATCGTGCGTGGCACGGTGTTGTCGCTGCGCGAG
AAAGAGTTCATCGCATCCTCGCGTGTGCTCGGCAACTCCGAGCTGTACACCATGTTGCGCCACATTTTGCCGAACTGCAT
TGCGCCGCTGACGGTGCTGGCGACATCCATGTTCGGCTGGGTCATCCTGGCCGAGAGCGCGCTGTCCTTCCTCGGCCTGG
GTGTGCCGCCGCCGGCGCCGACCTGGGGCAATATGCTGGCGTCGGCGCGGCCTTACATGGCGCAGGCGACCTATCTGTCG
ATCTTTCCCGGACTGTGCATCGCGCTCACGCTGCTGGGCATCAATTTTCTCGGCGACGCCGTGCGCGATCTGCTCGACCC
GCGCATGAAAGGTCTGCCATGA

Upstream 100 bases:

>100_bases
TGATTCAGGGATGTCTGTTGCTGGTGGCCGTGGTCTATGTGCTGACCAACCTGGTGATCGATCTGTGCTATCCCTTCTTT
GACCCGCGGGTGCTGGCCGA

Downstream 100 bases:

>100_bases
CGGCGCCTGCCGATCACCTCGATCACGCCAGGCACGGCTTGCTGGAAATCTCCGGCCTGAGCATCGCTGCCCGTGGCCGG
GCCATCGTGCGGGAGGTTTC

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 273; Mature: 273

Protein sequence:

>273_residues
MKKFCTPQALLGLLLIALMLGAALLALVWTPHDPLKISFSARLQPPGAEWPLGTDEFGRDELSRLMSGAANSLWISLLTV
LLAIVAGTGIGVVTGFVRGWPDRIVMAFINALLAFPGLLLALALLAVLGANQYGIILALGLAYTPSVARIVRGTVLSLRE
KEFIASSRVLGNSELYTMLRHILPNCIAPLTVLATSMFGWVILAESALSFLGLGVPPPAPTWGNMLASARPYMAQATYLS
IFPGLCIALTLLGINFLGDAVRDLLDPRMKGLP

Sequences:

>Translated_273_residues
MKKFCTPQALLGLLLIALMLGAALLALVWTPHDPLKISFSARLQPPGAEWPLGTDEFGRDELSRLMSGAANSLWISLLTV
LLAIVAGTGIGVVTGFVRGWPDRIVMAFINALLAFPGLLLALALLAVLGANQYGIILALGLAYTPSVARIVRGTVLSLRE
KEFIASSRVLGNSELYTMLRHILPNCIAPLTVLATSMFGWVILAESALSFLGLGVPPPAPTWGNMLASARPYMAQATYLS
IFPGLCIALTLLGINFLGDAVRDLLDPRMKGLP
>Mature_273_residues
MKKFCTPQALLGLLLIALMLGAALLALVWTPHDPLKISFSARLQPPGAEWPLGTDEFGRDELSRLMSGAANSLWISLLTV
LLAIVAGTGIGVVTGFVRGWPDRIVMAFINALLAFPGLLLALALLAVLGANQYGIILALGLAYTPSVARIVRGTVLSLRE
KEFIASSRVLGNSELYTMLRHILPNCIAPLTVLATSMFGWVILAESALSFLGLGVPPPAPTWGNMLASARPYMAQATYLS
IFPGLCIALTLLGINFLGDAVRDLLDPRMKGLP

Specific function: Probably part of an ABC transporter complex that could be involved in peptide import. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787054, Length=264, Percent_Identity=39.3939393939394, Blast_Score=194, Evalue=7e-51,
Organism=Escherichia coli, GI1787760, Length=270, Percent_Identity=35.9259259259259, Blast_Score=169, Evalue=2e-43,
Organism=Escherichia coli, GI1789889, Length=241, Percent_Identity=36.5145228215768, Blast_Score=147, Evalue=5e-37,
Organism=Escherichia coli, GI1789964, Length=246, Percent_Identity=40.2439024390244, Blast_Score=142, Evalue=2e-35,
Organism=Escherichia coli, GI1787498, Length=219, Percent_Identity=37.8995433789954, Blast_Score=120, Evalue=7e-29,
Organism=Escherichia coli, GI1787549, Length=211, Percent_Identity=35.5450236966825, Blast_Score=114, Evalue=8e-27,
Organism=Escherichia coli, GI1788505, Length=226, Percent_Identity=32.3008849557522, Blast_Score=90, Evalue=1e-19,
Organism=Escherichia coli, GI1787053, Length=175, Percent_Identity=27.4285714285714, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 29073; Mature: 29073

Theoretical pI: Translated: 9.21; Mature: 9.21

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKFCTPQALLGLLLIALMLGAALLALVWTPHDPLKISFSARLQPPGAEWPLGTDEFGRD
CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCCCCCCCCCCHH
ELSRLMSGAANSLWISLLTVLLAIVAGTGIGVVTGFVRGWPDRIVMAFINALLAFPGLLL
HHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
ALALLAVLGANQYGIILALGLAYTPSVARIVRGTVLSLREKEFIASSRVLGNSELYTMLR
HHHHHHHHCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
HILPNCIAPLTVLATSMFGWVILAESALSFLGLGVPPPAPTWGNMLASARPYMAQATYLS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCHHHHHHHHH
IFPGLCIALTLLGINFLGDAVRDLLDPRMKGLP
HHHHHHHHHHHHHHHHHHHHHHHHHCHHHCCCC
>Mature Secondary Structure
MKKFCTPQALLGLLLIALMLGAALLALVWTPHDPLKISFSARLQPPGAEWPLGTDEFGRD
CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCCCCCCCCCCHH
ELSRLMSGAANSLWISLLTVLLAIVAGTGIGVVTGFVRGWPDRIVMAFINALLAFPGLLL
HHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
ALALLAVLGANQYGIILALGLAYTPSVARIVRGTVLSLREKEFIASSRVLGNSELYTMLR
HHHHHHHHCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
HILPNCIAPLTVLATSMFGWVILAESALSFLGLGVPPPAPTWGNMLASARPYMAQATYLS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCHHHHHHHHH
IFPGLCIALTLLGINFLGDAVRDLLDPRMKGLP
HHHHHHHHHHHHHHHHHHHHHHHHHCHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA