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The map label for this gene is yliC [C]

Identifier: 121611629

GI number: 121611629

Start: 5211163

End: 5212107

Strand: Direct

Name: yliC [C]

Synonym: Veis_4723

Alternate gene names: 121611629

Gene position: 5211163-5212107 (Clockwise)

Preceding gene: 121611627

Following gene: 121611630

Centisome position: 93.61

GC content: 62.01

Gene sequence:

>945_bases
ATGCTTCGTTTCACGCTCGATCGCTTGCTCATGGCCTTGCCCACCTTGTTCATTGTCGCGGTTGCCGTTTTTGTGCTCAT
CCGCCTCATTCCTGGCGACCCGGCGCAACTGCTGCTCGGTGATCTGGCTGACACGGCGCGTCTGCTTGAGTTGCGCGCGC
ATCTGGGGCTGGATCAGAGTTGGCTCGCGCAATTTGGTGTCTGGGGCGGCCATGCCCTGCGCGGCGACCTCGGCGTTTCG
ATCACCACTGGCGAGCCGGTGTTGCAACTGGTGACGAGCCGCTTTCTGGTGAGCGCGCAGATCGTTGTGCTGGCCGTCTT
GCTCGCTGCGCTGGTCGCCGTGCCCGCCGGCATGATCGCCGCGTGGCAGCAAAATCGCCTGCCCGACCTGGCCTTGATCG
GTGCGGCCACCTTGCTGGTGTCGCTGCCGACGTTCTGGCTGGGCTTGTTGCTGTTGCTGTTTTTTGGCTTGAAACTGGAA
TGGCTGCCGGTGGTGGGCTATGTCTCTGTCATGAGCGACTGGAAGGGCGGCCTGCTGTATCTGGCGATGCCGATCATGAC
GCTGTTCCTGCATGAAATCGGCGTGCTCATCCGCATGGCACGCGCCAGCACGCTGGAAGTATTGCGGCTGGATTACATCA
CCCACGCCCGCGCCAAGGGACTGCCTGAACATGCGGTGATGCTGCGCCACGCCTTGCGCAATTCCTTTGGCCCGACCTGG
ACCCTGATCGGTCTGGTGCTGGGCAATCTGCTCGGCGGCGCGGCCGTGGTGGAAACCGTGTTCACCGTTCCCGGCCTTGG
CCGTTTGCTGGTGGATGCCATTTTTGCGCGCGACTATCCGGTGATTCAGGGATGTCTGTTGCTGGTGGCCGTGGTCTATG
TGCTGACCAACCTGGTGATCGATCTGTGCTATCCCTTCTTTGACCCGCGGGTGCTGGCCGAATGA

Upstream 100 bases:

>100_bases
GGGGTTTGCCTGTGTCGACAAGGTGCGAGGCCGTGCTGCTGCGCGCCAGTCTTGCGCAACTCTTGAGCAACTTCGTTTTT
CAACGCAGAGAACCCGACGC

Downstream 100 bases:

>100_bases
AAAAATTTTGCACACCGCAAGCGCTGCTCGGTCTGCTGCTCATCGCGCTCATGCTGGGGGCGGCGCTGCTGGCCTTGGTG
TGGACGCCGCACGATCCGCT

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 314; Mature: 314

Protein sequence:

>314_residues
MLRFTLDRLLMALPTLFIVAVAVFVLIRLIPGDPAQLLLGDLADTARLLELRAHLGLDQSWLAQFGVWGGHALRGDLGVS
ITTGEPVLQLVTSRFLVSAQIVVLAVLLAALVAVPAGMIAAWQQNRLPDLALIGAATLLVSLPTFWLGLLLLLFFGLKLE
WLPVVGYVSVMSDWKGGLLYLAMPIMTLFLHEIGVLIRMARASTLEVLRLDYITHARAKGLPEHAVMLRHALRNSFGPTW
TLIGLVLGNLLGGAAVVETVFTVPGLGRLLVDAIFARDYPVIQGCLLLVAVVYVLTNLVIDLCYPFFDPRVLAE

Sequences:

>Translated_314_residues
MLRFTLDRLLMALPTLFIVAVAVFVLIRLIPGDPAQLLLGDLADTARLLELRAHLGLDQSWLAQFGVWGGHALRGDLGVS
ITTGEPVLQLVTSRFLVSAQIVVLAVLLAALVAVPAGMIAAWQQNRLPDLALIGAATLLVSLPTFWLGLLLLLFFGLKLE
WLPVVGYVSVMSDWKGGLLYLAMPIMTLFLHEIGVLIRMARASTLEVLRLDYITHARAKGLPEHAVMLRHALRNSFGPTW
TLIGLVLGNLLGGAAVVETVFTVPGLGRLLVDAIFARDYPVIQGCLLLVAVVYVLTNLVIDLCYPFFDPRVLAE
>Mature_314_residues
MLRFTLDRLLMALPTLFIVAVAVFVLIRLIPGDPAQLLLGDLADTARLLELRAHLGLDQSWLAQFGVWGGHALRGDLGVS
ITTGEPVLQLVTSRFLVSAQIVVLAVLLAALVAVPAGMIAAWQQNRLPDLALIGAATLLVSLPTFWLGLLLLLFFGLKLE
WLPVVGYVSVMSDWKGGLLYLAMPIMTLFLHEIGVLIRMARASTLEVLRLDYITHARAKGLPEHAVMLRHALRNSFGPTW
TLIGLVLGNLLGGAAVVETVFTVPGLGRLLVDAIFARDYPVIQGCLLLVAVVYVLTNLVIDLCYPFFDPRVLAE

Specific function: Probably part of the binding-protein-dependent transport system y4tOPQRS for a peptide. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787053, Length=312, Percent_Identity=42.9487179487179, Blast_Score=227, Evalue=6e-61,
Organism=Escherichia coli, GI1789888, Length=314, Percent_Identity=38.5350318471338, Blast_Score=205, Evalue=3e-54,
Organism=Escherichia coli, GI1789965, Length=337, Percent_Identity=36.4985163204748, Blast_Score=200, Evalue=8e-53,
Organism=Escherichia coli, GI1787497, Length=314, Percent_Identity=34.3949044585987, Blast_Score=172, Evalue=4e-44,
Organism=Escherichia coli, GI1787761, Length=317, Percent_Identity=38.4858044164038, Blast_Score=155, Evalue=4e-39,
Organism=Escherichia coli, GI1787550, Length=270, Percent_Identity=30.3703703703704, Blast_Score=130, Evalue=2e-31,
Organism=Escherichia coli, GI1788504, Length=366, Percent_Identity=24.5901639344262, Blast_Score=103, Evalue=1e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 34153; Mature: 34153

Theoretical pI: Translated: 7.14; Mature: 7.14

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRFTLDRLLMALPTLFIVAVAVFVLIRLIPGDPAQLLLGDLADTARLLELRAHLGLDQS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHH
WLAQFGVWGGHALRGDLGVSITTGEPVLQLVTSRFLVSAQIVVLAVLLAALVAVPAGMIA
HHHHHCCCCCCEEECCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AWQQNRLPDLALIGAATLLVSLPTFWLGLLLLLFFGLKLEWLPVVGYVSVMSDWKGGLLY
HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHH
LAMPIMTLFLHEIGVLIRMARASTLEVLRLDYITHARAKGLPEHAVMLRHALRNSFGPTW
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHH
TLIGLVLGNLLGGAAVVETVFTVPGLGRLLVDAIFARDYPVIQGCLLLVAVVYVLTNLVI
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
DLCYPFFDPRVLAE
HHHHHCCCCHHCCC
>Mature Secondary Structure
MLRFTLDRLLMALPTLFIVAVAVFVLIRLIPGDPAQLLLGDLADTARLLELRAHLGLDQS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHH
WLAQFGVWGGHALRGDLGVSITTGEPVLQLVTSRFLVSAQIVVLAVLLAALVAVPAGMIA
HHHHHCCCCCCEEECCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AWQQNRLPDLALIGAATLLVSLPTFWLGLLLLLFFGLKLEWLPVVGYVSVMSDWKGGLLY
HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHH
LAMPIMTLFLHEIGVLIRMARASTLEVLRLDYITHARAKGLPEHAVMLRHALRNSFGPTW
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHH
TLIGLVLGNLLGGAAVVETVFTVPGLGRLLVDAIFARDYPVIQGCLLLVAVVYVLTNLVI
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
DLCYPFFDPRVLAE
HHHHHCCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9163424; 8796346 [H]