| Definition | Verminephrobacter eiseniae EF01-2 chromosome, complete genome. |
|---|---|
| Accession | NC_008786 |
| Length | 5,566,749 |
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The map label for this gene is 121611565
Identifier: 121611565
GI number: 121611565
Start: 5149167
End: 5150135
Strand: Direct
Name: 121611565
Synonym: Veis_4657
Alternate gene names: NA
Gene position: 5149167-5150135 (Clockwise)
Preceding gene: 121611564
Following gene: 121611566
Centisome position: 92.5
GC content: 59.03
Gene sequence:
>969_bases ATGATGAATCAAGAAAAATTCTTAACGGCGCGACGGCGGATACAAGTGGTGGTGCTGGCAGTGGCGGGCGCTGTTGCCGC CGTGGCGGCTAGCGCCAACGAATTTCCATCACGTCCGATCAAACTGGTGGTGCCATATCCGGCAGGCGGCACGCTGGATA TCGTGGGCCGCAACATCGCCAAAATGGCCGAGGCTTCGTTGGGGGAGCCCATCGTCGCAGACAACGTGCCTGGTGCCTCT GGCGTGATCGCACATTCACAGATCGCCCGCGCGCCCGCTGACGGCTACACGATTGGCATCTCCGGCTTGTCACCACTTGT GCTGGCGCCGCACCAATACAAGAATCTGCCCTATAGCCCCCTGAAGGATCTTTCCTATGTGGCATGCTTTGGCGAGACAC CGTTGGTGCTAAATGTCGCAATCTCGTTGCCAGTCAAGACGGTTCAGGAACTGGTGGCGTATGCCAAGGCCAACCCGGGA AAACTCAACTATGGCTCTGCGGGCATTGGCAATGCGTCGTATCTTGCCGCAGCGTTGTTCGCCCGCCAAGCGGGTATCGA GATCAGCCATGTGCCCTACAAAGGTAACGCACCGGCCATGATCGATCTGGTCGGAGGACAGATTCCGATTCTGTTCGATC CTCCGCAAACCACATTGCCTCAGGCCGCTACTGGCAAGGTGCGGCCACTGGCAGTCACCAGCAGCCAGCGCTTTCCCGGA CTGCCGACGCTGCCGACGATCGCCGAAGCGGGATGGGCCAACTACGAGTTTTCGATTTGGTATGCCCTGGTCGCGCCTGC AGGCGTGACCCTGCCCCCGAAAAACGTATCCCTTGCTGAGTGGTTCAATGCAAGCAAGGAAAACGGAAATGACGAAGACA GTGCGGGCGCGCTACACGCTGGAATTCAAGCAGCCGCAAGGGCAACTGCTGGGACAACGCCTGCAGCGAGACCCTGTTCG GTTCGTTGA
Upstream 100 bases:
>100_bases TGCTCGGCGCCAGTCGCATCCTTGGTTCTTTGGTGCATGAGGTCCATACAGCCGAATCGTTGCCAGATATGAATAACTTC CTACGTATAGAACGCTACAC
Downstream 100 bases:
>100_bases AGGTGGAGCGACTGCATGGGCAGCGCTTCGTGACGCGGCGCCAGGCCAAGGACGAGGTCATCGCCTGGGTACTCTGGTAC AACCGCACCCGGCTGCACTC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 322; Mature: 322
Protein sequence:
>322_residues MMNQEKFLTARRRIQVVVLAVAGAVAAVAASANEFPSRPIKLVVPYPAGGTLDIVGRNIAKMAEASLGEPIVADNVPGAS GVIAHSQIARAPADGYTIGISGLSPLVLAPHQYKNLPYSPLKDLSYVACFGETPLVLNVAISLPVKTVQELVAYAKANPG KLNYGSAGIGNASYLAAALFARQAGIEISHVPYKGNAPAMIDLVGGQIPILFDPPQTTLPQAATGKVRPLAVTSSQRFPG LPTLPTIAEAGWANYEFSIWYALVAPAGVTLPPKNVSLAEWFNASKENGNDEDSAGALHAGIQAAARATAGTTPAARPCS VR
Sequences:
>Translated_322_residues MMNQEKFLTARRRIQVVVLAVAGAVAAVAASANEFPSRPIKLVVPYPAGGTLDIVGRNIAKMAEASLGEPIVADNVPGAS GVIAHSQIARAPADGYTIGISGLSPLVLAPHQYKNLPYSPLKDLSYVACFGETPLVLNVAISLPVKTVQELVAYAKANPG KLNYGSAGIGNASYLAAALFARQAGIEISHVPYKGNAPAMIDLVGGQIPILFDPPQTTLPQAATGKVRPLAVTSSQRFPG LPTLPTIAEAGWANYEFSIWYALVAPAGVTLPPKNVSLAEWFNASKENGNDEDSAGALHAGIQAAARATAGTTPAARPCS VR >Mature_322_residues MMNQEKFLTARRRIQVVVLAVAGAVAAVAASANEFPSRPIKLVVPYPAGGTLDIVGRNIAKMAEASLGEPIVADNVPGAS GVIAHSQIARAPADGYTIGISGLSPLVLAPHQYKNLPYSPLKDLSYVACFGETPLVLNVAISLPVKTVQELVAYAKANPG KLNYGSAGIGNASYLAAALFARQAGIEISHVPYKGNAPAMIDLVGGQIPILFDPPQTTLPQAATGKVRPLAVTSSQRFPG LPTLPTIAEAGWANYEFSIWYALVAPAGVTLPPKNVSLAEWFNASKENGNDEDSAGALHAGIQAAARATAGTTPAARPCS VR
Specific function: Unknown
COG id: COG3181
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Periplasm (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0065 (bug) family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005064 [H]
Pfam domain/function: PF03401 Bug [H]
EC number: NA
Molecular weight: Translated: 33352; Mature: 33352
Theoretical pI: Translated: 9.20; Mature: 9.20
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMNQEKFLTARRRIQVVVLAVAGAVAAVAASANEFPSRPIKLVVPYPAGGTLDIVGRNIA CCCHHHHHHHHHHHEEEEEEHHHHHHHHHHHHCCCCCCCEEEEEECCCCCEEEECCCHHH KMAEASLGEPIVADNVPGASGVIAHSQIARAPADGYTIGISGLSPLVLAPHQYKNLPYSP HHHHHHCCCCEEECCCCCCCCEEEHHHHHCCCCCCEEEEECCCCCEEECCHHHCCCCCCC LKDLSYVACFGETPLVLNVAISLPVKTVQELVAYAKANPGKLNYGSAGIGNASYLAAALF HHCCEEEEECCCCCEEEEEEEECCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHH ARQAGIEISHVPYKGNAPAMIDLVGGQIPILFDPPQTTLPQAATGKVRPLAVTSSQRFPG HHHHCCEEEECCCCCCCCEEEEEECCEEEEEECCCCCCCCCCCCCCEEEEEEECCCCCCC LPTLPTIAEAGWANYEFSIWYALVAPAGVTLPPKNVSLAEWFNASKENGNDEDSAGALHA CCCCCHHHHCCCCCCEEEEEEEEECCCCCCCCCCCCCHHHHHCCCCCCCCCCCHHHHHHH GIQAAARATAGTTPAARPCSVR HHHHHHHHCCCCCCCCCCCCCC >Mature Secondary Structure MMNQEKFLTARRRIQVVVLAVAGAVAAVAASANEFPSRPIKLVVPYPAGGTLDIVGRNIA CCCHHHHHHHHHHHEEEEEEHHHHHHHHHHHHCCCCCCCEEEEEECCCCCEEEECCCHHH KMAEASLGEPIVADNVPGASGVIAHSQIARAPADGYTIGISGLSPLVLAPHQYKNLPYSP HHHHHHCCCCEEECCCCCCCCEEEHHHHHCCCCCCEEEEECCCCCEEECCHHHCCCCCCC LKDLSYVACFGETPLVLNVAISLPVKTVQELVAYAKANPGKLNYGSAGIGNASYLAAALF HHCCEEEEECCCCCEEEEEEEECCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHH ARQAGIEISHVPYKGNAPAMIDLVGGQIPILFDPPQTTLPQAATGKVRPLAVTSSQRFPG HHHHCCEEEECCCCCCCCEEEEEECCEEEEEECCCCCCCCCCCCCCEEEEEEECCCCCCC LPTLPTIAEAGWANYEFSIWYALVAPAGVTLPPKNVSLAEWFNASKENGNDEDSAGALHA CCCCCHHHHCCCCCCEEEEEEEEECCCCCCCCCCCCCHHHHHCCCCCCCCCCCHHHHHHH GIQAAARATAGTTPAARPCSVR HHHHHHHHCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 3299368 [H]