| Definition | Verminephrobacter eiseniae EF01-2 chromosome, complete genome. |
|---|---|
| Accession | NC_008786 |
| Length | 5,566,749 |
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The map label for this gene is 121611503
Identifier: 121611503
GI number: 121611503
Start: 5088510
End: 5089574
Strand: Direct
Name: 121611503
Synonym: Veis_4594
Alternate gene names: NA
Gene position: 5088510-5089574 (Clockwise)
Preceding gene: 121611502
Following gene: 121611504
Centisome position: 91.41
GC content: 70.61
Gene sequence:
>1065_bases ATGGCCTCGACGACCTCCCTGCCCTTCATCGGCACCCTCCCTGCGGGCACGCGCGACGCCATCACCGACGTCGCGGGCGT CACGGTTGGCCACCGCACGCTGGCCGACGGCCCGGTGCAGACCGGCGTGACCGTGATCCGTCCGCACGCGGGCGACCCGT TCCGCGACAAGGTGCCGGCCGCAGCCGTGGTGCTCAACGGTTTCGGCAAGAGCGTGGGGCTGGTGCAACTGGCCGAACTC GGCGTGCTGGAAACGCCCATCGCGCTGACCAACACCTTCTCGGTCGGCACCGTGGCGACAGCGCAGATCCGCGCGTGCGC GGCGGCCAACCCCGAGACCGGCCGCACGCTGCCCGCCGTGAACCCGCTGGTCTTCGAGTGCAACGACGGTTTTCTCAACG ACATCCAGCGGCTCGCCGTGACCGAGGCCGACTATCTGCAGGCACTGGCCGCCACCGATGCGGACTTTGCGCAGGGCTCG GTCGGCGCGGGGCGCGGCATGTCGAGCTTTCAACTGAAGGGCGGCATCGGCAGTGCGTCGCGCCGCGTGGCGATAGTCGA CGGCACGACCTGCACGGTCGGCGCGCTGGTGCTGGCGAACTACGGGCGCCAGCCGCAACTGGTGCTGGCCGGGCATGCAG TGGGCGAAAAGCTCGCAGCACTGCAGCAAGCATCGAAGGAAGCGTCGGAGCCCGAGCAGGGCTCGATCATCATCGTCGTC GCCACCGATGCACCGCTCGACGCGCGCCAGTTGCGCCGCCTCGCACTGCGCGCCGGCGCGGGGCTGGCCCGCACCGGTTC GGTCTTCGGCCACGGCAGCGGCGACCTGGTGCTGGCTTTCTCTACCGCCTACACCGTGCCCGACCGCGCCGACCGCCCCA TGCCGGCCGTCGCGATGCTGCACGACACGCTGCTCGACGGGCTGTTCCAGGCCGCAGCCGACAGCACCGAGCAGGCTATT TTTCATGCGCTGTGGCGCGCCACGCCCGTCACGGGGCGCGACGGCAACCACCGCGCTGCGCTCGGCGAACTGCTGCCGGC GTCTTCCCTTTCACCTCTCGTTTAG
Upstream 100 bases:
>100_bases TTGACCGTGCTGGCCTTCAACCTGCTGGGCGACGCCCTGCGCGACGCGCTCGATCCGAAGATCGAGCGCCAGTAAGTTCT TCGTTCTTCTTTCTCGCTTC
Downstream 100 bases:
>100_bases AAAACACACGCTCATGAAAGTCCTGATCTCCACCGACATCGAAGGCGTGGCGGGCGTCTACCACCACGAGCAGACACGCC AGGGCAACCCCGAATACGAA
Product: peptidase S58, DmpA
Products: NA
Alternate protein names: D-Aminopeptidase; Aminopeptidase DmpA; L-Aminopeptidase/D-Esterase; Aminopeptidase; Peptidase S; T4 Family Peptidase; Peptidase T4 Family; Family; Aminopeptidase-Like Protein; S58 Family Peptidase; L-Aminopeptidase DmpA; D-Aminopeptidease; D-Amino Peptidase Dmpa Family; Serine Peptidase; D-AMINO PEPTIDASE DmpA Family; L-Aminopeptidase Dmpa; Aminopeptidase DpmA; D-Alanine-D-Alanine Ligase / Aminopeptidase; Peptidase Family; L-Aminopeptidase D-Ala-Esterase/Amidase
Number of amino acids: Translated: 354; Mature: 353
Protein sequence:
>354_residues MASTTSLPFIGTLPAGTRDAITDVAGVTVGHRTLADGPVQTGVTVIRPHAGDPFRDKVPAAAVVLNGFGKSVGLVQLAEL GVLETPIALTNTFSVGTVATAQIRACAAANPETGRTLPAVNPLVFECNDGFLNDIQRLAVTEADYLQALAATDADFAQGS VGAGRGMSSFQLKGGIGSASRRVAIVDGTTCTVGALVLANYGRQPQLVLAGHAVGEKLAALQQASKEASEPEQGSIIIVV ATDAPLDARQLRRLALRAGAGLARTGSVFGHGSGDLVLAFSTAYTVPDRADRPMPAVAMLHDTLLDGLFQAAADSTEQAI FHALWRATPVTGRDGNHRAALGELLPASSLSPLV
Sequences:
>Translated_354_residues MASTTSLPFIGTLPAGTRDAITDVAGVTVGHRTLADGPVQTGVTVIRPHAGDPFRDKVPAAAVVLNGFGKSVGLVQLAEL GVLETPIALTNTFSVGTVATAQIRACAAANPETGRTLPAVNPLVFECNDGFLNDIQRLAVTEADYLQALAATDADFAQGS VGAGRGMSSFQLKGGIGSASRRVAIVDGTTCTVGALVLANYGRQPQLVLAGHAVGEKLAALQQASKEASEPEQGSIIIVV ATDAPLDARQLRRLALRAGAGLARTGSVFGHGSGDLVLAFSTAYTVPDRADRPMPAVAMLHDTLLDGLFQAAADSTEQAI FHALWRATPVTGRDGNHRAALGELLPASSLSPLV >Mature_353_residues ASTTSLPFIGTLPAGTRDAITDVAGVTVGHRTLADGPVQTGVTVIRPHAGDPFRDKVPAAAVVLNGFGKSVGLVQLAELG VLETPIALTNTFSVGTVATAQIRACAAANPETGRTLPAVNPLVFECNDGFLNDIQRLAVTEADYLQALAATDADFAQGSV GAGRGMSSFQLKGGIGSASRRVAIVDGTTCTVGALVLANYGRQPQLVLAGHAVGEKLAALQQASKEASEPEQGSIIIVVA TDAPLDARQLRRLALRAGAGLARTGSVFGHGSGDLVLAFSTAYTVPDRADRPMPAVAMLHDTLLDGLFQAAADSTEQAIF HALWRATPVTGRDGNHRAALGELLPASSLSPLV
Specific function: Unknown
COG id: COG3191
COG function: function code EQ; L-aminopeptidase/D-esterase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 36270; Mature: 36138
Theoretical pI: Translated: 6.16; Mature: 6.16
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MASTTSLPFIGTLPAGTRDAITDVAGVTVGHRTLADGPVQTGVTVIRPHAGDPFRDKVPA CCCCCCCCEEEECCCCCHHHHHHHHHCEECCCCCCCCCHHCCEEEEECCCCCCCHHHCCH AAVVLNGFGKSVGLVQLAELGVLETPIALTNTFSVGTVATAQIRACAAANPETGRTLPAV HEEEECCCCCCCHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCC NPLVFECNDGFLNDIQRLAVTEADYLQALAATDADFAQGSVGAGRGMSSFQLKGGIGSAS CCEEEECCCCHHHHHHHHHHCHHHHHHHHHHCCCHHHCCCCCCCCCCCCEEECCCCCCCC RRVAIVDGTTCTVGALVLANYGRQPQLVLAGHAVGEKLAALQQASKEASEPEQGSIIIVV CEEEEEECCCHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHHHHCCCCCCCCEEEEE ATDAPLDARQLRRLALRAGAGLARTGSVFGHGSGDLVLAFSTAYTVPDRADRPMPAVAML ECCCCCCHHHHHHHHHHHCCCCCCCCCEEECCCCCEEEEEEEEEECCCCCCCCCCHHHHH HDTLLDGLFQAAADSTEQAIFHALWRATPVTGRDGNHRAALGELLPASSLSPLV HHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCCCCC >Mature Secondary Structure ASTTSLPFIGTLPAGTRDAITDVAGVTVGHRTLADGPVQTGVTVIRPHAGDPFRDKVPA CCCCCCCEEEECCCCCHHHHHHHHHCEECCCCCCCCCHHCCEEEEECCCCCCCHHHCCH AAVVLNGFGKSVGLVQLAELGVLETPIALTNTFSVGTVATAQIRACAAANPETGRTLPAV HEEEECCCCCCCHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCC NPLVFECNDGFLNDIQRLAVTEADYLQALAATDADFAQGSVGAGRGMSSFQLKGGIGSAS CCEEEECCCCHHHHHHHHHHCHHHHHHHHHHCCCHHHCCCCCCCCCCCCEEECCCCCCCC RRVAIVDGTTCTVGALVLANYGRQPQLVLAGHAVGEKLAALQQASKEASEPEQGSIIIVV CEEEEEECCCHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHHHHCCCCCCCCEEEEE ATDAPLDARQLRRLALRAGAGLARTGSVFGHGSGDLVLAFSTAYTVPDRADRPMPAVAML ECCCCCCHHHHHHHHHHHCCCCCCCCCEEECCCCCEEEEEEEEEECCCCCCCCCCHHHHH HDTLLDGLFQAAADSTEQAIFHALWRATPVTGRDGNHRAALGELLPASSLSPLV HHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA