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The map label for this gene is xerC [H]

Identifier: 121611464

GI number: 121611464

Start: 5041961

End: 5043097

Strand: Direct

Name: xerC [H]

Synonym: Veis_4555

Alternate gene names: 121611464

Gene position: 5041961-5043097 (Clockwise)

Preceding gene: 121611463

Following gene: 121611465

Centisome position: 90.57

GC content: 71.94

Gene sequence:

>1137_bases
ATGGCCGACGCACCCGCATCACCGCCATCACCACCACCGTCGGCGCCACCTGCGCCCGACCCGCAGGTGCAGCGCTATCT
GGAGCATCTGCGCGTGGAAAAGCGCCTGGCGGCACGCAGCCTCACGCTGTACCGGCTGGACCTGGAAAAGCTGGCGCGGT
TTGCTGCGGGCCTGAGTCTGCCGCTGCTGCAACTGACGGACGCGCATATCCGGCGCTTCGTGGCGCAGATGCACAGCGCC
GGGCGCAGCGGGCGGGGCATTGCGCTGATCCTGTCGGGCTGGCGCGGGTTCTTCATCTGGGCCGGGCGGCAGGGACTGAT
CGGGCGCAACCCGGTGCTGGGCATACGCGCGCCCAAGTCTCCCAAGCCCCTGCCCAAGGCGCTGGGCGTGGACCAGGCCA
TGCGCCTGGCCGATTTCGACGGCGCTGCCGGCGCCGCTACCGAGGCCGACATCTGGCTACAGATACGCGACGCGGCGATG
GCCGAACTGCTCTACGGCAGCGGTCTGCGCGCGGGCGAACTGGCCGGGCTCGATGCCGTGCCCAACGCCGACACCGAGCG
CCAGGGGCGCGGCTGGGTCGACCTGCAGGCCGGCGAAGTCCATGTCCTTGGCAAAGGCAGCAAGCGCCGCAGCGTGCCGA
TGGGCCGCGCGGCCAGCGCCGCCTTGCGCGCCTGGCTGGCGCTGCGCGCCAAACCGTTCGGCGCGGCCGGCGCGGCCCGG
CTCGACGCGGCGCTGTTCGTCGGCCGGCGCGGCGCGCGGCTGACGACCCTGTCGATCTGGCGGCGCCTGCGCCAGCGCAG
CCAGCGGGCCGGGCTGCCCAGCCCGGTGCACCCGCATATGCTGCGCCACTCGTTTGCCAGCCATCTGCTGCAAAGCAGCG
GCGACCTGCGTGCCGTGCAAGAGTTGCTGGGCCACGCCAGCATCACCAGCACGCAGGTCTACACGCGGCTGGACTTCCAG
CACCTGGCCCGGGTCTATGACGCGACCCATCCACGGGCGCACAAAATGCCGTCGCCCGATCAAGGCCCGGCACCCACGCG
GCCAGCGCATGCCGCCGAAAAGCGCCCCAGCCCGTCCGGGCCAGGATCACGCAGCACCGGCCCCGCTAAACTCCCCGACG
CCGTTGGCAAACCATGA

Upstream 100 bases:

>100_bases
CGACTTCCTCGCGCGCATTGCAGAGTTGGCCAGTGCAGCGCTGCTGCGTCTGCGCTGACCGCGCACCAGTCGCCCGGCAC
AGCCCTGCGGCACCCAGACC

Downstream 100 bases:

>100_bases
GGCCTCCCATGTCCCTGATCCCCGTCACCATCCTTACCGGCTTTCTTGGCTCCGGCAAAACGACCTTGCTCAAGCGCCTG
CTGAGCGAAGCCCATGGCCA

Product: phage integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 378; Mature: 377

Protein sequence:

>378_residues
MADAPASPPSPPPSAPPAPDPQVQRYLEHLRVEKRLAARSLTLYRLDLEKLARFAAGLSLPLLQLTDAHIRRFVAQMHSA
GRSGRGIALILSGWRGFFIWAGRQGLIGRNPVLGIRAPKSPKPLPKALGVDQAMRLADFDGAAGAATEADIWLQIRDAAM
AELLYGSGLRAGELAGLDAVPNADTERQGRGWVDLQAGEVHVLGKGSKRRSVPMGRAASAALRAWLALRAKPFGAAGAAR
LDAALFVGRRGARLTTLSIWRRLRQRSQRAGLPSPVHPHMLRHSFASHLLQSSGDLRAVQELLGHASITSTQVYTRLDFQ
HLARVYDATHPRAHKMPSPDQGPAPTRPAHAAEKRPSPSGPGSRSTGPAKLPDAVGKP

Sequences:

>Translated_378_residues
MADAPASPPSPPPSAPPAPDPQVQRYLEHLRVEKRLAARSLTLYRLDLEKLARFAAGLSLPLLQLTDAHIRRFVAQMHSA
GRSGRGIALILSGWRGFFIWAGRQGLIGRNPVLGIRAPKSPKPLPKALGVDQAMRLADFDGAAGAATEADIWLQIRDAAM
AELLYGSGLRAGELAGLDAVPNADTERQGRGWVDLQAGEVHVLGKGSKRRSVPMGRAASAALRAWLALRAKPFGAAGAAR
LDAALFVGRRGARLTTLSIWRRLRQRSQRAGLPSPVHPHMLRHSFASHLLQSSGDLRAVQELLGHASITSTQVYTRLDFQ
HLARVYDATHPRAHKMPSPDQGPAPTRPAHAAEKRPSPSGPGSRSTGPAKLPDAVGKP
>Mature_377_residues
ADAPASPPSPPPSAPPAPDPQVQRYLEHLRVEKRLAARSLTLYRLDLEKLARFAAGLSLPLLQLTDAHIRRFVAQMHSAG
RSGRGIALILSGWRGFFIWAGRQGLIGRNPVLGIRAPKSPKPLPKALGVDQAMRLADFDGAAGAATEADIWLQIRDAAMA
ELLYGSGLRAGELAGLDAVPNADTERQGRGWVDLQAGEVHVLGKGSKRRSVPMGRAASAALRAWLALRAKPFGAAGAARL
DAALFVGRRGARLTTLSIWRRLRQRSQRAGLPSPVHPHMLRHSFASHLLQSSGDLRAVQELLGHASITSTQVYTRLDFQH
LARVYDATHPRAHKMPSPDQGPAPTRPAHAAEKRPSPSGPGSRSTGPAKLPDAVGKP

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG4973

COG function: function code L; Site-specific recombinase XerC

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790244, Length=314, Percent_Identity=43.9490445859873, Blast_Score=239, Evalue=3e-64,
Organism=Escherichia coli, GI1789261, Length=314, Percent_Identity=34.0764331210191, Blast_Score=151, Evalue=8e-38,
Organism=Escherichia coli, GI1790768, Length=185, Percent_Identity=31.8918918918919, Blast_Score=70, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107
- InterPro:   IPR011931 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 40540; Mature: 40409

Theoretical pI: Translated: 11.88; Mature: 11.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADAPASPPSPPPSAPPAPDPQVQRYLEHLRVEKRLAARSLTLYRLDLEKLARFAAGLSL
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEEECHHHHHHHHCCCCC
PLLQLTDAHIRRFVAQMHSAGRSGRGIALILSGWRGFFIWAGRQGLIGRNPVLGIRAPKS
HHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCEEEEEECCCCCCCCCCEEEEECCCC
PKPLPKALGVDQAMRLADFDGAAGAATEADIWLQIRDAAMAELLYGSGLRAGELAGLDAV
CCCCHHHHCHHHHHHHHCCCCCCCCCCCCCEEEEEHHHHHHHHHHCCCCCCCCCCCCCCC
PNADTERQGRGWVDLQAGEVHVLGKGSKRRSVPMGRAASAALRAWLALRAKPFGAAGAAR
CCCCCCCCCCCEEEEECCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHH
LDAALFVGRRGARLTTLSIWRRLRQRSQRAGLPSPVHPHMLRHSFASHLLQSSGDLRAVQ
HHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHH
ELLGHASITSTQVYTRLDFQHLARVYDATHPRAHKMPSPDQGPAPTRPAHAAEKRPSPSG
HHHCCCCCCHHHHHHHHCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCC
PGSRSTGPAKLPDAVGKP
CCCCCCCCCCCCHHCCCC
>Mature Secondary Structure 
ADAPASPPSPPPSAPPAPDPQVQRYLEHLRVEKRLAARSLTLYRLDLEKLARFAAGLSL
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEEECHHHHHHHHCCCCC
PLLQLTDAHIRRFVAQMHSAGRSGRGIALILSGWRGFFIWAGRQGLIGRNPVLGIRAPKS
HHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCEEEEEECCCCCCCCCCEEEEECCCC
PKPLPKALGVDQAMRLADFDGAAGAATEADIWLQIRDAAMAELLYGSGLRAGELAGLDAV
CCCCHHHHCHHHHHHHHCCCCCCCCCCCCCEEEEEHHHHHHHHHHCCCCCCCCCCCCCCC
PNADTERQGRGWVDLQAGEVHVLGKGSKRRSVPMGRAASAALRAWLALRAKPFGAAGAAR
CCCCCCCCCCCEEEEECCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHH
LDAALFVGRRGARLTTLSIWRRLRQRSQRAGLPSPVHPHMLRHSFASHLLQSSGDLRAVQ
HHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHH
ELLGHASITSTQVYTRLDFQHLARVYDATHPRAHKMPSPDQGPAPTRPAHAAEKRPSPSG
HHHCCCCCCHHHHHHHHCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCC
PGSRSTGPAKLPDAVGKP
CCCCCCCCCCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA