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The map label for this gene is ycjO [H]

Identifier: 121611427

GI number: 121611427

Start: 4997940

End: 4998842

Strand: Direct

Name: ycjO [H]

Synonym: Veis_4517

Alternate gene names: 121611427

Gene position: 4997940-4998842 (Clockwise)

Preceding gene: 121611426

Following gene: 121611428

Centisome position: 89.78

GC content: 60.91

Gene sequence:

>903_bases
ATGCGCAGCCGACGCGCCAGGAGCGAGGGGAACTCCCGCCTGGATTTCATCAGCGTGTCCTTCACGCTCGTGGTCTTGGT
CTTCATCGTGGTCATGATCATCCCGGTGGCTTGGGCGATTTTGCTGGGCTTCACGCACAGCGGTCCGTTTCAGGCCGGCA
CGACCTACGCGGGGCTGGACAACTACCGCGCCGTGCTGGCCGATCCGGCGTTCTGGCGCGCGCTGGGCATAGGTGCCAGC
TATGCAATGCTTACCACCGCGTTGGAAATGGTGTTGGGCGTGGGCATCGCCATCTTGCTGTTCAAGTCGGGCCAACCGAT
CTTCACCAGCCTCGCGCTACTGCCCTACATGATTCCGACGGTCACCACGGCGCTGGTTTGGCACTGGATGACCAACAACC
TCTACGGCATCGTCAATCATCTGCTGCTCCAAAGCGGGTTGGCCGACATGCCGGTTGATTTCGCAGGGCACGGCGCCTGG
GCTTTCGGCCTTGTCACGGTGGCCAGCGTCTGGCAGTTCACGCCCTTCGTGATTCTGGTGACCTTATCAAACCTCGGCAC
GATCGAGCGCAGCGTCCATGAAGCCGCATACATTGACGGGGCCAACTGGTGGCAGCAGGTAGCGCGCATCACGCTGCCCA
TCATCCGCACCTCGATCTTGTTGATATTGCTGTTGCGCGGCATCTGGATGTTCAACCGATTCGACGTGATCTGGCTCTTG
ACGGCCGGCGGGCCGCTCGGAGCCACGAGCACATTGCCGATTTACGCTTACGAGCGCGCCTTTGGCGACAACAGCTATGG
ACCAGCGGGCGCCACCTCGACCATCATCTTCGGCATTTTACTGGTGCTGGGTATCGTCTATATGCGCCTGTTCCAGCCCG
ACAAGGAGGTCGCCCGTGGCTAA

Upstream 100 bases:

>100_bases
TGGCCAATGTGATTCAGGGCGGCATCGCGCCGGACGCGGCTGTGACCGACGCGGCGCAAGCAGCCCGCGCCCTGCTCAAG
TTCGCCTGAACAGGGCCGAC

Downstream 100 bases:

>100_bases
GAAGATAACGCTGGCCCGGGCCGCGCCGACGACACTGCTGGTACTCTGGCTGATCCCCACGCTGTTCCCGTTTTACTGGA
TGCTGAAGTCGGCCCTGGGC

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 300; Mature: 300

Protein sequence:

>300_residues
MRSRRARSEGNSRLDFISVSFTLVVLVFIVVMIIPVAWAILLGFTHSGPFQAGTTYAGLDNYRAVLADPAFWRALGIGAS
YAMLTTALEMVLGVGIAILLFKSGQPIFTSLALLPYMIPTVTTALVWHWMTNNLYGIVNHLLLQSGLADMPVDFAGHGAW
AFGLVTVASVWQFTPFVILVTLSNLGTIERSVHEAAYIDGANWWQQVARITLPIIRTSILLILLLRGIWMFNRFDVIWLL
TAGGPLGATSTLPIYAYERAFGDNSYGPAGATSTIIFGILLVLGIVYMRLFQPDKEVARG

Sequences:

>Translated_300_residues
MRSRRARSEGNSRLDFISVSFTLVVLVFIVVMIIPVAWAILLGFTHSGPFQAGTTYAGLDNYRAVLADPAFWRALGIGAS
YAMLTTALEMVLGVGIAILLFKSGQPIFTSLALLPYMIPTVTTALVWHWMTNNLYGIVNHLLLQSGLADMPVDFAGHGAW
AFGLVTVASVWQFTPFVILVTLSNLGTIERSVHEAAYIDGANWWQQVARITLPIIRTSILLILLLRGIWMFNRFDVIWLL
TAGGPLGATSTLPIYAYERAFGDNSYGPAGATSTIIFGILLVLGIVYMRLFQPDKEVARG
>Mature_300_residues
MRSRRARSEGNSRLDFISVSFTLVVLVFIVVMIIPVAWAILLGFTHSGPFQAGTTYAGLDNYRAVLADPAFWRALGIGAS
YAMLTTALEMVLGVGIAILLFKSGQPIFTSLALLPYMIPTVTTALVWHWMTNNLYGIVNHLLLQSGLADMPVDFAGHGAW
AFGLVTVASVWQFTPFVILVTLSNLGTIERSVHEAAYIDGANWWQQVARITLPIIRTSILLILLLRGIWMFNRFDVIWLL
TAGGPLGATSTLPIYAYERAFGDNSYGPAGATSTIIFGILLVLGIVYMRLFQPDKEVARG

Specific function: Probably part of the binding-protein-dependent transport system ycjNOP. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1175

COG function: function code G; ABC-type sugar transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787570, Length=232, Percent_Identity=35.3448275862069, Blast_Score=132, Evalue=3e-32,
Organism=Escherichia coli, GI1789861, Length=264, Percent_Identity=26.8939393939394, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI1790465, Length=217, Percent_Identity=28.110599078341, Blast_Score=77, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 32872; Mature: 32872

Theoretical pI: Translated: 9.21; Mature: 9.21

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRSRRARSEGNSRLDFISVSFTLVVLVFIVVMIIPVAWAILLGFTHSGPFQAGTTYAGLD
CCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
NYRAVLADPAFWRALGIGASYAMLTTALEMVLGVGIAILLFKSGQPIFTSLALLPYMIPT
CCHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
VTTALVWHWMTNNLYGIVNHLLLQSGLADMPVDFAGHGAWAFGLVTVASVWQFTPFVILV
HHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
TLSNLGTIERSVHEAAYIDGANWWQQVARITLPIIRTSILLILLLRGIWMFNRFDVIWLL
HHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE
TAGGPLGATSTLPIYAYERAFGDNSYGPAGATSTIIFGILLVLGIVYMRLFQPDKEVARG
ECCCCCCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHCC
>Mature Secondary Structure
MRSRRARSEGNSRLDFISVSFTLVVLVFIVVMIIPVAWAILLGFTHSGPFQAGTTYAGLD
CCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
NYRAVLADPAFWRALGIGASYAMLTTALEMVLGVGIAILLFKSGQPIFTSLALLPYMIPT
CCHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
VTTALVWHWMTNNLYGIVNHLLLQSGLADMPVDFAGHGAWAFGLVTVASVWQFTPFVILV
HHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
TLSNLGTIERSVHEAAYIDGANWWQQVARITLPIIRTSILLILLLRGIWMFNRFDVIWLL
HHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE
TAGGPLGATSTLPIYAYERAFGDNSYGPAGATSTIIFGILLVLGIVYMRLFQPDKEVARG
ECCCCCCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]