Click here to switch to the map view.

The map label for this gene is ycjP [H]

Identifier: 121611428

GI number: 121611428

Start: 4998835

End: 4999662

Strand: Direct

Name: ycjP [H]

Synonym: Veis_4518

Alternate gene names: 121611428

Gene position: 4998835-4999662 (Clockwise)

Preceding gene: 121611427

Following gene: 121611429

Centisome position: 89.8

GC content: 57.97

Gene sequence:

>828_bases
GTGGCTAAGAAGATAACGCTGGCCCGGGCCGCGCCGACGACACTGCTGGTACTCTGGCTGATCCCCACGCTGTTCCCGTT
TTACTGGATGCTGAAGTCGGCCCTGGGCCACGCGCAGGACGTGTACAAACCGTCGCTCGGCATACAAAACGCATCACTCG
ATAATTTCGTCAGCCTTCTATCGAGCACCCACTTCCTTGCCAACGCGACCAACAGCCTGAAGGTCGCGCTGGCCGCCGCA
TGCGTGGTGATGGCGTGCAGCGCGTTGGGCGGCTACGCGCTGGCGCGCATGCGTTTCAAACACAAGACACTGCTCGCGCA
GGTGGTCCTGTTCTCCTACATGTTCCCGGAAATCTTGCTGGGCATCCCGTTTTTTGCGATGTTCCAGAAGATCGGACTGC
TCAACTCGCTGTCCGGGTTGGCCTTGGCGCATGTCACGCTGAGTCTACCGTTCGGTCTGTGGTTGATGTGGCAGTTCTAT
CAGTCGTTGCCGATGTCATATGAAGAAGCCGCGCAGATCGACGGCGCGAGCAAGTTCCAGACCTTTTATCGCATCATGCT
GCCGCTTTCAATTCCGGCGCTGGCTGCAGTATTCATTTTTGGCTTTGCGGCTTCGTGGAACGACTATGTCCTGGGCCTCA
TGCTGATCCGCGACGACCAGATGTTCACGCTACCGATCGCCATGAGCCTGTTCGTGCAGCAGATGGATTTGAACTGGGCG
CTCATCCAGGCTGCCAACGTGCTTTTGGCACTGCCTGGGCTGCTGCTTGTGTTGTTCGGTCAAAAGTACCTCGTGCGTGG
CTTGCAGACCAGCGGTCTGGCGAACTGA

Upstream 100 bases:

>100_bases
TATGGACCAGCGGGCGCCACCTCGACCATCATCTTCGGCATTTTACTGGTGCTGGGTATCGTCTATATGCGCCTGTTCCA
GCCCGACAAGGAGGTCGCCC

Downstream 100 bases:

>100_bases
GCGGCACTGCGGTTTTGCTGATTGACGCTGGAGATTTTTATGCGTTCCGTAGAAACTGATTACGTAGTCATCGGCGCCGG
TTCAGCCGGCTGCGTACTTG

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 275; Mature: 274

Protein sequence:

>275_residues
MAKKITLARAAPTTLLVLWLIPTLFPFYWMLKSALGHAQDVYKPSLGIQNASLDNFVSLLSSTHFLANATNSLKVALAAA
CVVMACSALGGYALARMRFKHKTLLAQVVLFSYMFPEILLGIPFFAMFQKIGLLNSLSGLALAHVTLSLPFGLWLMWQFY
QSLPMSYEEAAQIDGASKFQTFYRIMLPLSIPALAAVFIFGFAASWNDYVLGLMLIRDDQMFTLPIAMSLFVQQMDLNWA
LIQAANVLLALPGLLLVLFGQKYLVRGLQTSGLAN

Sequences:

>Translated_275_residues
MAKKITLARAAPTTLLVLWLIPTLFPFYWMLKSALGHAQDVYKPSLGIQNASLDNFVSLLSSTHFLANATNSLKVALAAA
CVVMACSALGGYALARMRFKHKTLLAQVVLFSYMFPEILLGIPFFAMFQKIGLLNSLSGLALAHVTLSLPFGLWLMWQFY
QSLPMSYEEAAQIDGASKFQTFYRIMLPLSIPALAAVFIFGFAASWNDYVLGLMLIRDDQMFTLPIAMSLFVQQMDLNWA
LIQAANVLLALPGLLLVLFGQKYLVRGLQTSGLAN
>Mature_274_residues
AKKITLARAAPTTLLVLWLIPTLFPFYWMLKSALGHAQDVYKPSLGIQNASLDNFVSLLSSTHFLANATNSLKVALAAAC
VVMACSALGGYALARMRFKHKTLLAQVVLFSYMFPEILLGIPFFAMFQKIGLLNSLSGLALAHVTLSLPFGLWLMWQFYQ
SLPMSYEEAAQIDGASKFQTFYRIMLPLSIPALAAVFIFGFAASWNDYVLGLMLIRDDQMFTLPIAMSLFVQQMDLNWAL
IQAANVLLALPGLLLVLFGQKYLVRGLQTSGLAN

Specific function: Probably part of the binding-protein-dependent transport system ycjNOP. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787571, Length=276, Percent_Identity=30.4347826086957, Blast_Score=138, Evalue=5e-34,
Organism=Escherichia coli, GI1790464, Length=209, Percent_Identity=34.4497607655502, Blast_Score=119, Evalue=2e-28,
Organism=Escherichia coli, GI1789860, Length=271, Percent_Identity=28.0442804428044, Blast_Score=85, Evalue=6e-18,
Organism=Escherichia coli, GI1787368, Length=153, Percent_Identity=29.4117647058824, Blast_Score=73, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 30359; Mature: 30227

Theoretical pI: Translated: 9.68; Mature: 9.68

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKKITLARAAPTTLLVLWLIPTLFPFYWMLKSALGHAQDVYKPSLGIQNASLDNFVSLL
CCCCEEHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH
SSTHFLANATNSLKVALAAACVVMACSALGGYALARMRFKHKTLLAQVVLFSYMFPEILL
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GIPFFAMFQKIGLLNSLSGLALAHVTLSLPFGLWLMWQFYQSLPMSYEEAAQIDGASKFQ
HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCHHHHH
TFYRIMLPLSIPALAAVFIFGFAASWNDYVLGLMLIRDDQMFTLPIAMSLFVQQMDLNWA
HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHEEEEEECCCEEHHHHHHHHHHHHHCCCHH
LIQAANVLLALPGLLLVLFGQKYLVRGLQTSGLAN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
AKKITLARAAPTTLLVLWLIPTLFPFYWMLKSALGHAQDVYKPSLGIQNASLDNFVSLL
CCCEEHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH
SSTHFLANATNSLKVALAAACVVMACSALGGYALARMRFKHKTLLAQVVLFSYMFPEILL
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GIPFFAMFQKIGLLNSLSGLALAHVTLSLPFGLWLMWQFYQSLPMSYEEAAQIDGASKFQ
HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCHHHHH
TFYRIMLPLSIPALAAVFIFGFAASWNDYVLGLMLIRDDQMFTLPIAMSLFVQQMDLNWA
HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHEEEEEECCCEEHHHHHHHHHHHHHCCCHH
LIQAANVLLALPGLLLVLFGQKYLVRGLQTSGLAN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]