| Definition | Verminephrobacter eiseniae EF01-2 chromosome, complete genome. |
|---|---|
| Accession | NC_008786 |
| Length | 5,566,749 |
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The map label for this gene is 121611390
Identifier: 121611390
GI number: 121611390
Start: 4949125
End: 4950114
Strand: Direct
Name: 121611390
Synonym: Veis_4478
Alternate gene names: NA
Gene position: 4949125-4950114 (Clockwise)
Preceding gene: 121611388
Following gene: 121611391
Centisome position: 88.91
GC content: 69.29
Gene sequence:
>990_bases ATGTCACGCCTCGTTTGCCGTCATTCTTGGCTGTGGCTCGTCGCATTGGCGAGCGCAGCCTGCTGGGCCCAGGGCGCAGC CCCCGCGGCATGGCCGAACCAGCCCCTGAAGATCATCGTCGGCTTTCCGGCCGGTTCATCCCCCGACCTGACCGCGCGCC TGTTCGCCGAACCTCTGTCCAAGGCCCTGGGCCAGCCCGTGATCGTCGACAACAAGGTGGGGGCGGGCGGCAACATTGCC GCCGATGCCGTGGCCAAGGCGCGCGATGACCACACCATCGGCCTGATGATCAATGGCAACCTGACCATCGCCAAGCAACT GAACCCGGCCCTGCCCTATGACCCGCTCCAGGATTTCGCGCCGCTGAGCCTGATCGGCACCGCCCCGCTGGTGCTGACCG CGCCCGTGGACCCGTCTGGCGTATCCGCCAGCGCCCGGGACTTTTTCGCCGCCGCCCGCAAAGGCGGCGACCGTTGGAAT TACGGCACGCCGGGGGTGGGAACGGTGGGCCATATCGGCACCGAACTGCTCAAGTCGCGCAGCCGCATCAACCCGGTGCA TGTGCCCTACCCCGGCTATGCGCAGGTGGCCAGCGCGCTGCTGGGCGGGCAGTTGCAGATGGCGCTGCTGCCCCCGGCAT TGGCGCAGGCCCAGGTGCGCGCCGGCAAGCTGCGCGCGATTGGCGTCACGTCTGCCGGACGCAGCCTGCTGGCCCCGGAA CTGCCGAGTCTGGCGGAAGCCGGCATCGAGGATTTCCAACTCGAAATCTGGAATGCCTTTGCCGCCCCGGCGAGCATGCC CGCCGCCATTCGGTCCAGGCTGGCCGCGCTGATCGGCGACCTGGCCCGCAGCCAGGAAATGCGCGACAAGCTGTTCCAGC AGGGCTGGCAGACGGTCGGCTCCTCGCCCGAAGGGCTGGCCAACCGCATCCAGGCCGACGCCCGGCTGCTGGGCGGCGTG ATTGCCGCGCACCGGATCGAGGCCCGGTAG
Upstream 100 bases:
>100_bases CAGGCTGCACGGTGGTGAGTCAACCAGTTCAGCAATCAAGGCTGGCAACCACGCCTTGACCACTGAAGTTTGAATGATCT GAAAGATATAAGGAGACCCC
Downstream 100 bases:
>100_bases GCGGCGACCATGCCCGCCTGCGCCGGCCCGCAAGCCCCCGGGGCTGCCCCGGAAACGCCCGCCACCGGCCTGCTGCTGAC CGGTGGCGGCGCCCGGGCCG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 329; Mature: 328
Protein sequence:
>329_residues MSRLVCRHSWLWLVALASAACWAQGAAPAAWPNQPLKIIVGFPAGSSPDLTARLFAEPLSKALGQPVIVDNKVGAGGNIA ADAVAKARDDHTIGLMINGNLTIAKQLNPALPYDPLQDFAPLSLIGTAPLVLTAPVDPSGVSASARDFFAAARKGGDRWN YGTPGVGTVGHIGTELLKSRSRINPVHVPYPGYAQVASALLGGQLQMALLPPALAQAQVRAGKLRAIGVTSAGRSLLAPE LPSLAEAGIEDFQLEIWNAFAAPASMPAAIRSRLAALIGDLARSQEMRDKLFQQGWQTVGSSPEGLANRIQADARLLGGV IAAHRIEAR
Sequences:
>Translated_329_residues MSRLVCRHSWLWLVALASAACWAQGAAPAAWPNQPLKIIVGFPAGSSPDLTARLFAEPLSKALGQPVIVDNKVGAGGNIA ADAVAKARDDHTIGLMINGNLTIAKQLNPALPYDPLQDFAPLSLIGTAPLVLTAPVDPSGVSASARDFFAAARKGGDRWN YGTPGVGTVGHIGTELLKSRSRINPVHVPYPGYAQVASALLGGQLQMALLPPALAQAQVRAGKLRAIGVTSAGRSLLAPE LPSLAEAGIEDFQLEIWNAFAAPASMPAAIRSRLAALIGDLARSQEMRDKLFQQGWQTVGSSPEGLANRIQADARLLGGV IAAHRIEAR >Mature_328_residues SRLVCRHSWLWLVALASAACWAQGAAPAAWPNQPLKIIVGFPAGSSPDLTARLFAEPLSKALGQPVIVDNKVGAGGNIAA DAVAKARDDHTIGLMINGNLTIAKQLNPALPYDPLQDFAPLSLIGTAPLVLTAPVDPSGVSASARDFFAAARKGGDRWNY GTPGVGTVGHIGTELLKSRSRINPVHVPYPGYAQVASALLGGQLQMALLPPALAQAQVRAGKLRAIGVTSAGRSLLAPEL PSLAEAGIEDFQLEIWNAFAAPASMPAAIRSRLAALIGDLARSQEMRDKLFQQGWQTVGSSPEGLANRIQADARLLGGVI AAHRIEAR
Specific function: Unknown
COG id: COG3181
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Periplasm (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0065 (bug) family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005064 [H]
Pfam domain/function: PF03401 Bug [H]
EC number: NA
Molecular weight: Translated: 34363; Mature: 34232
Theoretical pI: Translated: 10.01; Mature: 10.01
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRLVCRHSWLWLVALASAACWAQGAAPAAWPNQPLKIIVGFPAGSSPDLTARLFAEPLS CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHH KALGQPVIVDNKVGAGGNIAADAVAKARDDHTIGLMINGNLTIAKQLNPALPYDPLQDFA HHCCCCEEEECCCCCCCCHHHHHHHHCCCCCEEEEEEECCEEEEECCCCCCCCCCHHHCC PLSLIGTAPLVLTAPVDPSGVSASARDFFAAARKGGDRWNYGTPGVGTVGHIGTELLKSR CHHEECCCCEEEECCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHH SRINPVHVPYPGYAQVASALLGGQLQMALLPPALAQAQVRAGKLRAIGVTSAGRSLLAPE HCCCCEECCCCCHHHHHHHHHCCCEEEECCCHHHHHHHHHCCCEEEEEECCCCCCCCCCC LPSLAEAGIEDFQLEIWNAFAAPASMPAAIRSRLAALIGDLARSQEMRDKLFQQGWQTVG CCHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC SSPEGLANRIQADARLLGGVIAAHRIEAR CCHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure SRLVCRHSWLWLVALASAACWAQGAAPAAWPNQPLKIIVGFPAGSSPDLTARLFAEPLS CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHH KALGQPVIVDNKVGAGGNIAADAVAKARDDHTIGLMINGNLTIAKQLNPALPYDPLQDFA HHCCCCEEEECCCCCCCCHHHHHHHHCCCCCEEEEEEECCEEEEECCCCCCCCCCHHHCC PLSLIGTAPLVLTAPVDPSGVSASARDFFAAARKGGDRWNYGTPGVGTVGHIGTELLKSR CHHEECCCCEEEECCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHH SRINPVHVPYPGYAQVASALLGGQLQMALLPPALAQAQVRAGKLRAIGVTSAGRSLLAPE HCCCCEECCCCCHHHHHHHHHCCCEEEECCCHHHHHHHHHCCCEEEEEECCCCCCCCCCC LPSLAEAGIEDFQLEIWNAFAAPASMPAAIRSRLAALIGDLARSQEMRDKLFQQGWQTVG CCHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC SSPEGLANRIQADARLLGGVIAAHRIEAR CCHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 2013566 [H]