Click here to switch to the map view.

The map label for this gene is fliC [H]

Identifier: 121611312

GI number: 121611312

Start: 4845634

End: 4847154

Strand: Direct

Name: fliC [H]

Synonym: Veis_4398

Alternate gene names: 121611312

Gene position: 4845634-4847154 (Clockwise)

Preceding gene: 121611305

Following gene: 121611313

Centisome position: 87.05

GC content: 65.48

Gene sequence:

>1521_bases
ATGGCTGCCACGATCAACACCAATATTGCGTCGCTGACCGCACAGCGCAATCTGGGCCTGAGCCAGTCGTCGCTGAACAC
CTCGATACAGCGCCTGTCCTCGGGCCTGCGCATCAACAGCGCCAAGGACGATGCGGCGGGGCTGGCGATTTCCGAGCGCT
TTACGAGCCAGATTCGCGGCCTGGACCAGGCGGCGCGCAACGCCAATGACGGCATCTCGCTGGCCCAGGTCACCGAAGGG
GCGATGAAGTCGGCCAGCGACATCTTGCAGCGGGTGCGCGAGTTGGCGGTGCAGTCGGCCAATGCGTCCAACAGCCCCGG
CGACCGCCAGGCGCTGAACCAGGAAGTGGGCCAGTTGGTCAGCGAGCTCGATCGCATTGCGCAAACCACTGAATTCAACG
GCGCCAAATTGCTCGACGGCAGCTTTGGCACGCAGCAGTTCCAGGTGGGCGCCAATGCCAACCAGACCATCGTCGCGGCC
ACGGCCAATCTGCGCACCGGCGTGTATGGCAACAACCAAAACACGGCGGCCAATGGCGCCGGCGCCGATGCCAACATGGG
CGCCGATGCCGCCTGGGGGAGCAACGGTGTCGGCACCGGGGCATTGGCCATCAGCGGCGCGCTCGGCTCGGCCAGCATCG
GCATCGAGGCGAACCACACGGCCAAGGCCATGGCCGACGCCATCAACCTGAAAACCGCCGATACCGGCGTCACGGCCTCG
GCGCGCACCGAGGTGCAGTTGTCCTTTTCTGCGCCCGGCGCTTACACCTTCCAGTTGCGCAGCGAAAACCGCCCGAACCC
GCCCGCGCTCGGGCAGCCGATGGCGTTCCATGTGACGGCGACCGGTACGATCGACGGCTTGTCGAACGCGATTGCCGCGA
TCAATGAGCAATCGGCCAAGACCGGGGTCACCGCCGCGCTGAACCCGGGCGCCACCGGCATCGTGCTGACCAACACCACG
GGGCAGGACATCGGCCTGTACAAAAGCGCCAGTGACAGCGGCAATGCGGGCACGATCACTGTCCAAAAGCAAAACGCCGA
TGGCCTGCCCGCAGGCAGCGCGGGCGCCTTGGCGGCCGCCGCCGGCGTTGGCAATGCCACCGTCAGCGGGTATGTGGTGC
TCGATGCGAACAAGCCCTTTTCCACGACCGTCACCACCACGAACGCTTTCAACACCACGGCTCCCGCCGACTCCGCCTCC
TCGCTGCAAGAAGTGGCCGGCCTGGATGTGACGACATTCAAAAATGCGACCGAGGCCCTCAAGACCGTGGACTCTGCGCT
GTCGTTCATCAATGGCGAGCGCGCCAAGCTCGGCGCGTTGCAGTCGCGCTTCGAGAGCACCATCGCCTCGCTGAACATCA
CCTCGGAAAACCTGTCGGCATCGCGCTCGCGCATCCTCGACGCCGACTTCGCCACCGAGACGGCGAACCTGTCGCGCGCC
CAAATCCTGCAACAGGCCGGCACCGCGATGGTGGCCCAGGCGAACCAGATTCCGCAAGGCGTGCTCAAGCTGTTGCAGTA
G

Upstream 100 bases:

>100_bases
CGCAAACAGCGCGGTCTTGGTGCGGTTCATTGCGCCAACGCAGCCAGGCGGCACTGCCGACAATGCCCGTCACCCCTGTC
CGGCTCAAGGAGCATCTGCC

Downstream 100 bases:

>100_bases
CCGTGCCCCGAGCCGTGCCCCGCACAGTACCCCGTACAACGCCCCGTACAACGCCCCGAACGGCGGCCCGGCCAAGGACG
CAGCGTGCAAGACAGCCACC

Product: flagellin domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 506; Mature: 505

Protein sequence:

>506_residues
MAATINTNIASLTAQRNLGLSQSSLNTSIQRLSSGLRINSAKDDAAGLAISERFTSQIRGLDQAARNANDGISLAQVTEG
AMKSASDILQRVRELAVQSANASNSPGDRQALNQEVGQLVSELDRIAQTTEFNGAKLLDGSFGTQQFQVGANANQTIVAA
TANLRTGVYGNNQNTAANGAGADANMGADAAWGSNGVGTGALAISGALGSASIGIEANHTAKAMADAINLKTADTGVTAS
ARTEVQLSFSAPGAYTFQLRSENRPNPPALGQPMAFHVTATGTIDGLSNAIAAINEQSAKTGVTAALNPGATGIVLTNTT
GQDIGLYKSASDSGNAGTITVQKQNADGLPAGSAGALAAAAGVGNATVSGYVVLDANKPFSTTVTTTNAFNTTAPADSAS
SLQEVAGLDVTTFKNATEALKTVDSALSFINGERAKLGALQSRFESTIASLNITSENLSASRSRILDADFATETANLSRA
QILQQAGTAMVAQANQIPQGVLKLLQ

Sequences:

>Translated_506_residues
MAATINTNIASLTAQRNLGLSQSSLNTSIQRLSSGLRINSAKDDAAGLAISERFTSQIRGLDQAARNANDGISLAQVTEG
AMKSASDILQRVRELAVQSANASNSPGDRQALNQEVGQLVSELDRIAQTTEFNGAKLLDGSFGTQQFQVGANANQTIVAA
TANLRTGVYGNNQNTAANGAGADANMGADAAWGSNGVGTGALAISGALGSASIGIEANHTAKAMADAINLKTADTGVTAS
ARTEVQLSFSAPGAYTFQLRSENRPNPPALGQPMAFHVTATGTIDGLSNAIAAINEQSAKTGVTAALNPGATGIVLTNTT
GQDIGLYKSASDSGNAGTITVQKQNADGLPAGSAGALAAAAGVGNATVSGYVVLDANKPFSTTVTTTNAFNTTAPADSAS
SLQEVAGLDVTTFKNATEALKTVDSALSFINGERAKLGALQSRFESTIASLNITSENLSASRSRILDADFATETANLSRA
QILQQAGTAMVAQANQIPQGVLKLLQ
>Mature_505_residues
AATINTNIASLTAQRNLGLSQSSLNTSIQRLSSGLRINSAKDDAAGLAISERFTSQIRGLDQAARNANDGISLAQVTEGA
MKSASDILQRVRELAVQSANASNSPGDRQALNQEVGQLVSELDRIAQTTEFNGAKLLDGSFGTQQFQVGANANQTIVAAT
ANLRTGVYGNNQNTAANGAGADANMGADAAWGSNGVGTGALAISGALGSASIGIEANHTAKAMADAINLKTADTGVTASA
RTEVQLSFSAPGAYTFQLRSENRPNPPALGQPMAFHVTATGTIDGLSNAIAAINEQSAKTGVTAALNPGATGIVLTNTTG
QDIGLYKSASDSGNAGTITVQKQNADGLPAGSAGALAAAAGVGNATVSGYVVLDANKPFSTTVTTTNAFNTTAPADSASS
LQEVAGLDVTTFKNATEALKTVDSALSFINGERAKLGALQSRFESTIASLNITSENLSASRSRILDADFATETANLSRAQ
ILQQAGTAMVAQANQIPQGVLKLLQ

Specific function: Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella [H]

COG id: COG1344

COG function: function code N; Flagellin and related hook-associated proteins

Gene ontology:

Cell location: Secreted. Bacterial flagellum [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial flagellin family [H]

Homologues:

Organism=Escherichia coli, GI1788232, Length=90, Percent_Identity=52.2222222222222, Blast_Score=91, Evalue=2e-19,

Paralogues:

None

Copy number: 200,000-400,000 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001492
- InterPro:   IPR001029
- InterPro:   IPR010810 [H]

Pfam domain/function: PF00700 Flagellin_C; PF07196 Flagellin_IN; PF00669 Flagellin_N [H]

EC number: NA

Molecular weight: Translated: 51277; Mature: 51146

Theoretical pI: Translated: 4.92; Mature: 4.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAATINTNIASLTAQRNLGLSQSSLNTSIQRLSSGLRINSAKDDAAGLAISERFTSQIRG
CCEEECCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCEECCCCCCHHCCHHHHHHHHHHHH
LDQAARNANDGISLAQVTEGAMKSASDILQRVRELAVQSANASNSPGDRQALNQEVGQLV
HHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH
SELDRIAQTTEFNGAKLLDGSFGTQQFQVGANANQTIVAATANLRTGVYGNNQNTAANGA
HHHHHHHHHCCCCCCEEECCCCCCCEEEECCCCCCEEEEEECCCEECCCCCCCCCCCCCC
GADANMGADAAWGSNGVGTGALAISGALGSASIGIEANHTAKAMADAINLKTADTGVTAS
CCCCCCCCCCCCCCCCCCCCCEEEECCCCCCEECEECCCHHHHHHHHHCCEECCCCCEEC
ARTEVQLSFSAPGAYTFQLRSENRPNPPALGQPMAFHVTATGTIDGLSNAIAAINEQSAK
CCEEEEEEECCCCEEEEEEECCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHCCCCCC
TGVTAALNPGATGIVLTNTTGQDIGLYKSASDSGNAGTITVQKQNADGLPAGSAGALAAA
CCCEEEECCCCCEEEEECCCCCCCCEEECCCCCCCCEEEEEEECCCCCCCCCCCCHHHHH
AGVGNATVSGYVVLDANKPFSTTVTTTNAFNTTAPADSASSLQEVAGLDVTTFKNATEAL
CCCCCCEEEEEEEEECCCCCCEEEEECCCCCCCCCCCCHHHHHHHHCCCEEHHHHHHHHH
KTVDSALSFINGERAKLGALQSRFESTIASLNITSENLSASRSRILDADFATETANLSRA
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHEEEECHHHHHHHHHHHCCCHHCCCCCCCHHH
QILQQAGTAMVAQANQIPQGVLKLLQ
HHHHHHCCEEEHHHHCCHHHHHHHHC
>Mature Secondary Structure 
AATINTNIASLTAQRNLGLSQSSLNTSIQRLSSGLRINSAKDDAAGLAISERFTSQIRG
CEEECCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCEECCCCCCHHCCHHHHHHHHHHHH
LDQAARNANDGISLAQVTEGAMKSASDILQRVRELAVQSANASNSPGDRQALNQEVGQLV
HHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH
SELDRIAQTTEFNGAKLLDGSFGTQQFQVGANANQTIVAATANLRTGVYGNNQNTAANGA
HHHHHHHHHCCCCCCEEECCCCCCCEEEECCCCCCEEEEEECCCEECCCCCCCCCCCCCC
GADANMGADAAWGSNGVGTGALAISGALGSASIGIEANHTAKAMADAINLKTADTGVTAS
CCCCCCCCCCCCCCCCCCCCCEEEECCCCCCEECEECCCHHHHHHHHHCCEECCCCCEEC
ARTEVQLSFSAPGAYTFQLRSENRPNPPALGQPMAFHVTATGTIDGLSNAIAAINEQSAK
CCEEEEEEECCCCEEEEEEECCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHCCCCCC
TGVTAALNPGATGIVLTNTTGQDIGLYKSASDSGNAGTITVQKQNADGLPAGSAGALAAA
CCCEEEECCCCCEEEEECCCCCCCCEEECCCCCCCCEEEEEEECCCCCCCCCCCCHHHHH
AGVGNATVSGYVVLDANKPFSTTVTTTNAFNTTAPADSASSLQEVAGLDVTTFKNATEAL
CCCCCCEEEEEEEEECCCCCCEEEEECCCCCCCCCCCCHHHHHHHHCCCEEHHHHHHHHH
KTVDSALSFINGERAKLGALQSRFESTIASLNITSENLSASRSRILDADFATETANLSRA
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHEEEECHHHHHHHHHHHCCCHHCCCCCCCHHH
QILQQAGTAMVAQANQIPQGVLKLLQ
HHHHHHCCEEEHHHHCCHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10984043; 1697577 [H]