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The map label for this gene is rbsC [H]

Identifier: 121611244

GI number: 121611244

Start: 4771271

End: 4772272

Strand: Direct

Name: rbsC [H]

Synonym: Veis_4330

Alternate gene names: 121611244

Gene position: 4771271-4772272 (Clockwise)

Preceding gene: 121611243

Following gene: 121611252

Centisome position: 85.71

GC content: 69.26

Gene sequence:

>1002_bases
ATGGCCTTCACGCCCGGCCCGCTCGTGCGCGCCAAGGACTGGCTGGTGCGCCGGCCCTCGGCCTTCACGCTGCTGCTGAT
CGTGGCGCTGTGCGCGGTGGTGGGCGGCATCAACCCGGTCTTTTTCCAGATGTCGAATCTGTTCGACATGGCGCGCGCCT
GCGTGGTGGTCGGCCTGTTCGCGCTGGGCGTGCTGATCGTGCTGGCGGCGGGCGGGCTGGACGTGTCGTTCACCGCCATC
GCGGCGCTGTGCATGTACGCGATCACCAAGGCCGTGCTGCGCTACGCGCCGGGCACGCCGATCGCGGTGATTTTGCTGGC
CGGCGCCGTCGGCGGCGCGCTGCTGGGCGCGCTCAACGGGCTGCTGGTGCATGCGCTGCAAACCCCGTCGCTGATCGTGA
CCATCGGCACACAGTACCTGTACCGGGGCCTGCTGCTGACCTTCGTCGGGACCTCGCTGTTCATGAACATCCCGGCCTCG
ATGGAAGCCTTTGGCACGCTGGCGCTGATCGACCGGGTGTCGGCGCAGGGCACGCGCTCGGTGCTGCCGGCCTTCGTGCT
GGTGCTGGCGGCGGCGGCGGCGCTGACCTGGTGGCTGCTCAACCGCACGCTCATGGGCCGCGCGGTGTTCGCGATCGGCG
GCAGCCTGTCGATCGCGCAGCGGCTGGGCTATCGACTGCGCACGGTGCAGGTGTTCGTGTTCGCCTATGCCGGCCTGCTG
GCGGGCGTGGCCGGCATCGTGCATGTATCGAGCAACCGCATGGCCAGCCCGTTCGATCTGCACGGCATGGAGCTCGACGT
GATCGCCGCCGTGATCCTGGGCGGCGCGCGCATCACCGGCGGCAACGGCACGGTGGCGGGCACGCTGCTGGGCGTGGTGC
TGGTCACGCTGGTCAACAACGTGCTGATCCTGGTCGGCGTGCCAAGCACCTGGCAGAAGGTGATCGTCGGCAGCTTCATC
GTGCTGGCCGGCGCGTTCTTTGCCATCCGCCGTTCGCGTTGA

Upstream 100 bases:

>100_bases
CGCAGCCGAAGGCGAAGGTATTCCATCGATCGCCGCCCGGCCGCCCGAAGGCGCTCGCACCGTAGCCGAAGGCGAAGGTA
CCCCGGTGAGCGCGTCTGCA

Downstream 100 bases:

>100_bases
GCGCAACCCTGCCGCAGCGCATCCGATGCGGCGCGAAACATCGGGCAACGGCCGCTGAAGGAACATGCCCGCACCACCCG
CACACCCGCACCGGCGGCGG

Product: inner-membrane translocator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 333; Mature: 332

Protein sequence:

>333_residues
MAFTPGPLVRAKDWLVRRPSAFTLLLIVALCAVVGGINPVFFQMSNLFDMARACVVVGLFALGVLIVLAAGGLDVSFTAI
AALCMYAITKAVLRYAPGTPIAVILLAGAVGGALLGALNGLLVHALQTPSLIVTIGTQYLYRGLLLTFVGTSLFMNIPAS
MEAFGTLALIDRVSAQGTRSVLPAFVLVLAAAAALTWWLLNRTLMGRAVFAIGGSLSIAQRLGYRLRTVQVFVFAYAGLL
AGVAGIVHVSSNRMASPFDLHGMELDVIAAVILGGARITGGNGTVAGTLLGVVLVTLVNNVLILVGVPSTWQKVIVGSFI
VLAGAFFAIRRSR

Sequences:

>Translated_333_residues
MAFTPGPLVRAKDWLVRRPSAFTLLLIVALCAVVGGINPVFFQMSNLFDMARACVVVGLFALGVLIVLAAGGLDVSFTAI
AALCMYAITKAVLRYAPGTPIAVILLAGAVGGALLGALNGLLVHALQTPSLIVTIGTQYLYRGLLLTFVGTSLFMNIPAS
MEAFGTLALIDRVSAQGTRSVLPAFVLVLAAAAALTWWLLNRTLMGRAVFAIGGSLSIAQRLGYRLRTVQVFVFAYAGLL
AGVAGIVHVSSNRMASPFDLHGMELDVIAAVILGGARITGGNGTVAGTLLGVVLVTLVNNVLILVGVPSTWQKVIVGSFI
VLAGAFFAIRRSR
>Mature_332_residues
AFTPGPLVRAKDWLVRRPSAFTLLLIVALCAVVGGINPVFFQMSNLFDMARACVVVGLFALGVLIVLAAGGLDVSFTAIA
ALCMYAITKAVLRYAPGTPIAVILLAGAVGGALLGALNGLLVHALQTPSLIVTIGTQYLYRGLLLTFVGTSLFMNIPASM
EAFGTLALIDRVSAQGTRSVLPAFVLVLAAAAALTWWLLNRTLMGRAVFAIGGSLSIAQRLGYRLRTVQVFVFAYAGLLA
GVAGIVHVSSNRMASPFDLHGMELDVIAAVILGGARITGGNGTVAGTLLGVVLVTLVNNVLILVGVPSTWQKVIVGSFIV
LAGAFFAIRRSR

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788896, Length=324, Percent_Identity=31.7901234567901, Blast_Score=119, Evalue=4e-28,
Organism=Escherichia coli, GI1790191, Length=315, Percent_Identity=30.4761904761905, Blast_Score=114, Evalue=1e-26,
Organism=Escherichia coli, GI1787793, Length=259, Percent_Identity=33.2046332046332, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI87082395, Length=276, Percent_Identity=30.4347826086957, Blast_Score=94, Evalue=2e-20,
Organism=Escherichia coli, GI1789992, Length=337, Percent_Identity=27.893175074184, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1787794, Length=319, Percent_Identity=29.7805642633229, Blast_Score=85, Evalue=8e-18,
Organism=Escherichia coli, GI1790524, Length=335, Percent_Identity=26.2686567164179, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI145693152, Length=295, Percent_Identity=28.8135593220339, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI1788471, Length=241, Percent_Identity=31.5352697095436, Blast_Score=66, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 34664; Mature: 34533

Theoretical pI: Translated: 11.30; Mature: 11.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAFTPGPLVRAKDWLVRRPSAFTLLLIVALCAVVGGINPVFFQMSNLFDMARACVVVGLF
CCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
ALGVLIVLAAGGLDVSFTAIAALCMYAITKAVLRYAPGTPIAVILLAGAVGGALLGALNG
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
LLVHALQTPSLIVTIGTQYLYRGLLLTFVGTSLFMNIPASMEAFGTLALIDRVSAQGTRS
HHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHH
VLPAFVLVLAAAAALTWWLLNRTLMGRAVFAIGGSLSIAQRLGYRLRTVQVFVFAYAGLL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCHHHHHHHHHHHHHHHHH
AGVAGIVHVSSNRMASPFDLHGMELDVIAAVILGGARITGGNGTVAGTLLGVVLVTLVNN
HHHHHHHEECCCCCCCCCCCCCCHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHCC
VLILVGVPSTWQKVIVGSFIVLAGAFFAIRRSR
EEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
AFTPGPLVRAKDWLVRRPSAFTLLLIVALCAVVGGINPVFFQMSNLFDMARACVVVGLF
CCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
ALGVLIVLAAGGLDVSFTAIAALCMYAITKAVLRYAPGTPIAVILLAGAVGGALLGALNG
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
LLVHALQTPSLIVTIGTQYLYRGLLLTFVGTSLFMNIPASMEAFGTLALIDRVSAQGTRS
HHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHH
VLPAFVLVLAAAAALTWWLLNRTLMGRAVFAIGGSLSIAQRLGYRLRTVQVFVFAYAGLL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCHHHHHHHHHHHHHHHHH
AGVAGIVHVSSNRMASPFDLHGMELDVIAAVILGGARITGGNGTVAGTLLGVVLVTLVNN
HHHHHHHEECCCCCCCCCCCCCCHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHCC
VLILVGVPSTWQKVIVGSFIVLAGAFFAIRRSR
EEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]