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The map label for this gene is yfdE [H]

Identifier: 121611107

GI number: 121611107

Start: 4615850

End: 4617058

Strand: Direct

Name: yfdE [H]

Synonym: Veis_4191

Alternate gene names: 121611107

Gene position: 4615850-4617058 (Clockwise)

Preceding gene: 121611105

Following gene: 121611108

Centisome position: 82.92

GC content: 70.14

Gene sequence:

>1209_bases
ATGGCCTCGACTTCTACGCACCTCGCCTACACCGGGCTGCGCGTGCTCGATCTCTCGCAAGGCATCGCGGGGCCGTACTG
CGGCCAGATCCTGCGCCAGCTCGGGGCCGACGTGGTGAAGGCAGAGCCGCTCGAAGGCGACTGGAGCCGGCGCATCGGGC
TGGCGCGGGGCGGCATGACCGCGATCACGATGGCCTTCAACCGCGGCAAGCGCAGCCTGGCCTGCGATGCGCGGCATCCG
GAAGGCCGCGCACTGCTCGCCTTGCTTGCGGCGCGCACCGACATCGTGATCCAGAGCTTTCGCCCGGGCGTGGCGCAGCG
CATGGGCCTGGGGCCTGCCGAGGTGCGCGCGGCGAATCCGTCGGTGATCTACCTGTCGATCTCGGGCTTCGGCCAGAGCG
GGCCTGACGCGCAGCGCCCGGGCACCGACGCCATCGCGCAAACGGTCTCGGGCTTGGCCGTGGCCAACCGCGCACCCGAC
GGCACGCCGGCCACTGCCAAGCCCTACATCGCCGACGTGTCGTGCGGCCTGTACGCGGCCAACGCCGTCGGTGCCGCGCT
GTTCGCGCGCGAACGCTCGCTCGAAAGGTTGGGCGCGCACCTGGACCTGAGTCTGCTCGCCTGCATGGCAGCGCTACAGA
ACCCGCTGCTCATCGAGCACGTCTGGCGCGGTGATGCACCCGCCACCGCTGCGACGGTACCGCAAGGCATCTACGCAACG
GCGGACGGCCACATCGCGCTCGCGGCGATGAGCGATGCGATGTTCGCGGCCATTGGTGAGGTGATCGGTCGGCCCGCGTG
GCGCAGCGATCCACGCATGGCCACGGCGGCAAACCGGCTGGCCGTTGCTGGCGAGATCGATGCGGCGTTGAAGGCCGCTC
TGTCCACCCGCACGAATTCGCAATGGGTTGCAGCCTTCGCGGCGCGCGACATTTTGGGGGGCGAAGTGCGACACGCCACG
CAACTGCTCGACGATGCGCAGGTGCGCCACCTCGGCCTGCTGCAGCCGATGACGCGCACGGACGACCCGTCGCTGCCGCC
CTTGCCCGGCGTGGCCTTGCCCGGCATCGATGCCACGCATCACGTGCCGCGCGCGCCACGGCTCGGCGAACACACGCAAG
AGATTCTTCGCGAACTGTGCTTCGATGACGCCCACATTGCCGCGCTGATGCAGGCGCGCGTGCTCGCCTCGTCGCCCACG
CCGCACTGA

Upstream 100 bases:

>100_bases
AGTCAGTCGATTCTTGCGGATTATCTAACTGGATCATTGCTTGCGCCAAACCCATGATCGATTTGGCATTCATAAATAAA
CCAGAGACTCGCTGTTGAAC

Downstream 100 bases:

>100_bases
CGCACTGACGCACTGACCACGCCACTCCCTCCCCTCCTGAAGCACACCATGGACACAGCAACCCCCACCGTCCCCCAAGA
TGCCCCCGTGCGCTGCGTGT

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 402; Mature: 401

Protein sequence:

>402_residues
MASTSTHLAYTGLRVLDLSQGIAGPYCGQILRQLGADVVKAEPLEGDWSRRIGLARGGMTAITMAFNRGKRSLACDARHP
EGRALLALLAARTDIVIQSFRPGVAQRMGLGPAEVRAANPSVIYLSISGFGQSGPDAQRPGTDAIAQTVSGLAVANRAPD
GTPATAKPYIADVSCGLYAANAVGAALFARERSLERLGAHLDLSLLACMAALQNPLLIEHVWRGDAPATAATVPQGIYAT
ADGHIALAAMSDAMFAAIGEVIGRPAWRSDPRMATAANRLAVAGEIDAALKAALSTRTNSQWVAAFAARDILGGEVRHAT
QLLDDAQVRHLGLLQPMTRTDDPSLPPLPGVALPGIDATHHVPRAPRLGEHTQEILRELCFDDAHIAALMQARVLASSPT
PH

Sequences:

>Translated_402_residues
MASTSTHLAYTGLRVLDLSQGIAGPYCGQILRQLGADVVKAEPLEGDWSRRIGLARGGMTAITMAFNRGKRSLACDARHP
EGRALLALLAARTDIVIQSFRPGVAQRMGLGPAEVRAANPSVIYLSISGFGQSGPDAQRPGTDAIAQTVSGLAVANRAPD
GTPATAKPYIADVSCGLYAANAVGAALFARERSLERLGAHLDLSLLACMAALQNPLLIEHVWRGDAPATAATVPQGIYAT
ADGHIALAAMSDAMFAAIGEVIGRPAWRSDPRMATAANRLAVAGEIDAALKAALSTRTNSQWVAAFAARDILGGEVRHAT
QLLDDAQVRHLGLLQPMTRTDDPSLPPLPGVALPGIDATHHVPRAPRLGEHTQEILRELCFDDAHIAALMQARVLASSPT
PH
>Mature_401_residues
ASTSTHLAYTGLRVLDLSQGIAGPYCGQILRQLGADVVKAEPLEGDWSRRIGLARGGMTAITMAFNRGKRSLACDARHPE
GRALLALLAARTDIVIQSFRPGVAQRMGLGPAEVRAANPSVIYLSISGFGQSGPDAQRPGTDAIAQTVSGLAVANRAPDG
TPATAKPYIADVSCGLYAANAVGAALFARERSLERLGAHLDLSLLACMAALQNPLLIEHVWRGDAPATAATVPQGIYATA
DGHIALAAMSDAMFAAIGEVIGRPAWRSDPRMATAANRLAVAGEIDAALKAALSTRTNSQWVAAFAARDILGGEVRHATQ
LLDDAQVRHLGLLQPMTRTDDPSLPPLPGVALPGIDATHHVPRAPRLGEHTQEILRELCFDDAHIAALMQARVLASSPTP
H

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=398, Percent_Identity=30.1507537688442, Blast_Score=176, Evalue=3e-44,
Organism=Homo sapiens, GI300863124, Length=424, Percent_Identity=28.3018867924528, Blast_Score=162, Evalue=6e-40,
Organism=Homo sapiens, GI300863126, Length=394, Percent_Identity=27.1573604060914, Blast_Score=145, Evalue=8e-35,
Organism=Homo sapiens, GI13376042, Length=424, Percent_Identity=25.7075471698113, Blast_Score=122, Evalue=6e-28,
Organism=Homo sapiens, GI266456254, Length=401, Percent_Identity=26.4339152119701, Blast_Score=120, Evalue=2e-27,
Organism=Homo sapiens, GI42794625, Length=401, Percent_Identity=26.4339152119701, Blast_Score=120, Evalue=2e-27,
Organism=Homo sapiens, GI266458393, Length=267, Percent_Identity=29.9625468164794, Blast_Score=95, Evalue=1e-19,
Organism=Homo sapiens, GI266458397, Length=267, Percent_Identity=29.2134831460674, Blast_Score=94, Evalue=3e-19,
Organism=Homo sapiens, GI42822893, Length=144, Percent_Identity=35.4166666666667, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI266458395, Length=144, Percent_Identity=35.4166666666667, Blast_Score=87, Evalue=3e-17,
Organism=Escherichia coli, GI87082093, Length=310, Percent_Identity=26.4516129032258, Blast_Score=148, Evalue=5e-37,
Organism=Escherichia coli, GI1788717, Length=418, Percent_Identity=25.1196172248804, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI1786222, Length=335, Percent_Identity=25.9701492537313, Blast_Score=72, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI32564160, Length=309, Percent_Identity=25.5663430420712, Blast_Score=83, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI115535051, Length=308, Percent_Identity=25, Blast_Score=75, Evalue=4e-14,
Organism=Drosophila melanogaster, GI24648431, Length=379, Percent_Identity=32.7176781002639, Blast_Score=183, Evalue=2e-46,
Organism=Drosophila melanogaster, GI24585488, Length=308, Percent_Identity=27.9220779220779, Blast_Score=109, Evalue=3e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 42132; Mature: 42000

Theoretical pI: Translated: 7.67; Mature: 7.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASTSTHLAYTGLRVLDLSQGIAGPYCGQILRQLGADVVKAEPLEGDWSRRIGLARGGMT
CCCCCCCHHHHCEEEEECCCCCCCHHHHHHHHHHCCHHEECCCCCCCHHHHHHHCCCCCE
AITMAFNRGKRSLACDARHPEGRALLALLAARTDIVIQSFRPGVAQRMGLGPAEVRAANP
EEEEEHHCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCHHHHCCCCC
SVIYLSISGFGQSGPDAQRPGTDAIAQTVSGLAVANRAPDGTPATAKPYIADVSCGLYAA
CEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCHHHH
NAVGAALFARERSLERLGAHLDLSLLACMAALQNPLLIEHVWRGDAPATAATVPQGIYAT
HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCEEHHHHCCCCCCCHHHCCCCEEEE
ADGHIALAAMSDAMFAAIGEVIGRPAWRSDPRMATAANRLAVAGEIDAALKAALSTRTNS
CCCCEEEEEHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHEEECCHHHHHHHHHHHHCCCC
QWVAAFAARDILGGEVRHATQLLDDAQVRHLGLLQPMTRTDDPSLPPLPGVALPGIDATH
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
HVPRAPRLGEHTQEILRELCFDDAHIAALMQARVLASSPTPH
CCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
ASTSTHLAYTGLRVLDLSQGIAGPYCGQILRQLGADVVKAEPLEGDWSRRIGLARGGMT
CCCCCCHHHHCEEEEECCCCCCCHHHHHHHHHHCCHHEECCCCCCCHHHHHHHCCCCCE
AITMAFNRGKRSLACDARHPEGRALLALLAARTDIVIQSFRPGVAQRMGLGPAEVRAANP
EEEEEHHCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCHHHHCCCCC
SVIYLSISGFGQSGPDAQRPGTDAIAQTVSGLAVANRAPDGTPATAKPYIADVSCGLYAA
CEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCHHHH
NAVGAALFARERSLERLGAHLDLSLLACMAALQNPLLIEHVWRGDAPATAATVPQGIYAT
HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCEEHHHHCCCCCCCHHHCCCCEEEE
ADGHIALAAMSDAMFAAIGEVIGRPAWRSDPRMATAANRLAVAGEIDAALKAALSTRTNS
CCCCEEEEEHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHEEECCHHHHHHHHHHHHCCCC
QWVAAFAARDILGGEVRHATQLLDDAQVRHLGLLQPMTRTDDPSLPPLPGVALPGIDATH
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
HVPRAPRLGEHTQEILRELCFDDAHIAALMQARVLASSPTPH
CCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]