| Definition | Verminephrobacter eiseniae EF01-2 chromosome, complete genome. |
|---|---|
| Accession | NC_008786 |
| Length | 5,566,749 |
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The map label for this gene is paaE [H]
Identifier: 121610867
GI number: 121610867
Start: 4333529
End: 4334614
Strand: Direct
Name: paaE [H]
Synonym: Veis_3949
Alternate gene names: 121610867
Gene position: 4333529-4334614 (Clockwise)
Preceding gene: 121610866
Following gene: 121610868
Centisome position: 77.85
GC content: 69.06
Gene sequence:
>1086_bases ATGAGCCCCATCTTCCACCCCCTGCGCGTGCGCTCCATCGAGCCTGACACGGCCGAAGCCGTCATCGTCGCCTTCGATGT GCCGCCGGATCTGCACCAGGTGTTCGGGTTCACCCAGGGCCAGCACCTGACGCTGCGCGCCGACATCGACGGCCAGGACC TGCGCCGCGCCTACTCCATCTGCGCCGGCATCGACGATGGCCAACTGCGCGTGGGCGTGCGCAAGGTCGCCGGTGGCCGG TTCTCCCACTGGCTCCATACCCGGCTGCGGGTCGGTGATACCTTGCAGGTGATGGCGCCGCAGGGCCGCTTCTTCGTGCC GCTGCAGCCCGCCGCGCAGCGCCACTACCTGGGCATCGCGGGGGGCAGCGGCATCACGCCCATCCTGTCGCTCATGAAGA CGGCGCTGGCGCGCGAGCCGCGCAGCCGCTTTACGCTGATCTACGGCAACCGCAGCCTGCAGTCCACCATGTTCAGGGAA GAACTGCAGGACCTGAAGAACCGCTACCTGGCGCGCCTGGCGCTGCACCATGTGTTCTCGGCCGAACAGACCGATCTGCC GCTGAACATGGGCCGGATCGACCACGGCAAGATCACGGCCTTCCTGGATGCGCTGCTGCCCGTGCGCCGCATCGATGTGG CCTTCATCTGCGGCCCCTTCCAGATGAACGACCAGGTGCAGGCCGCGCTACTGGCCGCCGGCCTGCCGGCCGAGCGCATC CATGTCGAGCGCTTTGGTCTGGCGCTGCCCGCCGGCGCTCAGGCCGATGCCGTCATGCACCAGGCGCTGGCGGGCGACGC GCACAGCGCGCGCATCACCATCGTGCGCGACGGCCTGCGGCGCGAGTTCCGCTTCACCCGGGAGCAGGCCAGCATTCTGG ATGCGGCCTCGGCGGCCGGGCTGGAATTGCCGTTTGCCTGCACCTCGGGCGTGTGCGGAACCTGTCGCGCCCGATGCCTG CAAGGCCGGGTGCGCATGGAGCGCAATTTCGCGCTCGACCAGGCCGATCTGGACGCCGGCTTCGTGCTCAGTTGCCAATG CCGGCCGCTGACGGACAGCGTCGTGCTGTCGTTCGACGAGCGCTGA
Upstream 100 bases:
>100_bases TCGGCGCCACGGCCTGCAAGGCGCTGTACCGGTGCCTGGACTGCCGCGAGCCCTTCGAGCATTTCAAGCCCTTGTAAAGC GCCCTTTTTTCGTCACCGAC
Downstream 100 bases:
>100_bases TGATGGCCGCCAGCGTGGCGCCCGGCCGTTTCTCCGCACCAAGGCGCGCTGCCTGCATGCCGGCCGCGCCCCGCGATGAG GCAAGATGGCGCCCCCGATA
Product: phenylacetate-CoA oxygenase/reductase, PaaK subunit
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 361; Mature: 360
Protein sequence:
>361_residues MSPIFHPLRVRSIEPDTAEAVIVAFDVPPDLHQVFGFTQGQHLTLRADIDGQDLRRAYSICAGIDDGQLRVGVRKVAGGR FSHWLHTRLRVGDTLQVMAPQGRFFVPLQPAAQRHYLGIAGGSGITPILSLMKTALAREPRSRFTLIYGNRSLQSTMFRE ELQDLKNRYLARLALHHVFSAEQTDLPLNMGRIDHGKITAFLDALLPVRRIDVAFICGPFQMNDQVQAALLAAGLPAERI HVERFGLALPAGAQADAVMHQALAGDAHSARITIVRDGLRREFRFTREQASILDAASAAGLELPFACTSGVCGTCRARCL QGRVRMERNFALDQADLDAGFVLSCQCRPLTDSVVLSFDER
Sequences:
>Translated_361_residues MSPIFHPLRVRSIEPDTAEAVIVAFDVPPDLHQVFGFTQGQHLTLRADIDGQDLRRAYSICAGIDDGQLRVGVRKVAGGR FSHWLHTRLRVGDTLQVMAPQGRFFVPLQPAAQRHYLGIAGGSGITPILSLMKTALAREPRSRFTLIYGNRSLQSTMFRE ELQDLKNRYLARLALHHVFSAEQTDLPLNMGRIDHGKITAFLDALLPVRRIDVAFICGPFQMNDQVQAALLAAGLPAERI HVERFGLALPAGAQADAVMHQALAGDAHSARITIVRDGLRREFRFTREQASILDAASAAGLELPFACTSGVCGTCRARCL QGRVRMERNFALDQADLDAGFVLSCQCRPLTDSVVLSFDER >Mature_360_residues SPIFHPLRVRSIEPDTAEAVIVAFDVPPDLHQVFGFTQGQHLTLRADIDGQDLRRAYSICAGIDDGQLRVGVRKVAGGRF SHWLHTRLRVGDTLQVMAPQGRFFVPLQPAAQRHYLGIAGGSGITPILSLMKTALAREPRSRFTLIYGNRSLQSTMFREE LQDLKNRYLARLALHHVFSAEQTDLPLNMGRIDHGKITAFLDALLPVRRIDVAFICGPFQMNDQVQAALLAAGLPAERIH VERFGLALPAGAQADAVMHQALAGDAHSARITIVRDGLRREFRFTREQASILDAASAAGLELPFACTSGVCGTCRARCLQ GRVRMERNFALDQADLDAGFVLSCQCRPLTDSVVLSFDER
Specific function: May be part of a multicomponent oxygenase involved in phenylacetyl-CoA hydroxylation [H]
COG id: COG1018
COG function: function code C; Flavodoxin reductases (ferredoxin-NADPH reductases) family 1
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 FAD-binding FR-type domain [H]
Homologues:
Organism=Homo sapiens, GI284448551, Length=269, Percent_Identity=27.5092936802974, Blast_Score=80, Evalue=4e-15, Organism=Homo sapiens, GI284448553, Length=269, Percent_Identity=27.5092936802974, Blast_Score=79, Evalue=5e-15, Organism=Homo sapiens, GI6552328, Length=269, Percent_Identity=27.5092936802974, Blast_Score=79, Evalue=5e-15, Organism=Homo sapiens, GI193794826, Length=269, Percent_Identity=27.5092936802974, Blast_Score=79, Evalue=5e-15, Organism=Homo sapiens, GI4503327, Length=269, Percent_Identity=27.5092936802974, Blast_Score=79, Evalue=7e-15, Organism=Homo sapiens, GI49574502, Length=221, Percent_Identity=28.0542986425339, Blast_Score=71, Evalue=2e-12, Organism=Escherichia coli, GI1787658, Length=357, Percent_Identity=45.6582633053221, Blast_Score=308, Evalue=4e-85, Organism=Escherichia coli, GI1787098, Length=326, Percent_Identity=23.9263803680982, Blast_Score=96, Evalue=5e-21, Organism=Escherichia coli, GI1788104, Length=358, Percent_Identity=25.9776536312849, Blast_Score=88, Evalue=8e-19, Organism=Escherichia coli, GI1788903, Length=239, Percent_Identity=25.5230125523013, Blast_Score=73, Evalue=3e-14, Organism=Caenorhabditis elegans, GI17563926, Length=220, Percent_Identity=25.9090909090909, Blast_Score=72, Evalue=6e-13, Organism=Caenorhabditis elegans, GI17563928, Length=220, Percent_Identity=26.3636363636364, Blast_Score=71, Evalue=8e-13, Organism=Saccharomyces cerevisiae, GI6322146, Length=214, Percent_Identity=26.6355140186916, Blast_Score=79, Evalue=1e-15, Organism=Saccharomyces cerevisiae, GI6323510, Length=187, Percent_Identity=26.7379679144385, Blast_Score=78, Evalue=2e-15, Organism=Drosophila melanogaster, GI281366101, Length=220, Percent_Identity=26.3636363636364, Blast_Score=71, Evalue=1e-12, Organism=Drosophila melanogaster, GI24662934, Length=220, Percent_Identity=26.3636363636364, Blast_Score=71, Evalue=1e-12, Organism=Drosophila melanogaster, GI24662938, Length=221, Percent_Identity=26.6968325791855, Blast_Score=71, Evalue=1e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006058 - InterPro: IPR012675 - InterPro: IPR017927 - InterPro: IPR001041 - InterPro: IPR001709 - InterPro: IPR008333 - InterPro: IPR001433 - InterPro: IPR011884 - InterPro: IPR001221 - InterPro: IPR017938 [H]
Pfam domain/function: PF00970 FAD_binding_6; PF00111 Fer2; PF00175 NAD_binding_1 [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 39787; Mature: 39656
Theoretical pI: Translated: 8.42; Mature: 8.42
Prosite motif: PS00197 2FE2S_FER_1 ; PS51085 2FE2S_FER_2 ; PS00430 TONB_DEPENDENT_REC_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.2 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 2.2 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSPIFHPLRVRSIEPDTAEAVIVAFDVPPDLHQVFGFTQGQHLTLRADIDGQDLRRAYSI CCCCCCCCEEECCCCCCCCEEEEEECCCCHHHHHHCCCCCCEEEEEECCCHHHHHHHHHH CAGIDDGQLRVGVRKVAGGRFSHWLHTRLRVGDTLQVMAPQGRFFVPLQPAAQRHYLGIA HCCCCCCCEEEEHHHHCCCCHHHHHHHHHHCCCEEEEECCCCCEEEECCCCCCCCEEEEE GGSGITPILSLMKTALAREPRSRFTLIYGNRSLQSTMFREELQDLKNRYLARLALHHVFS CCCCHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC AEQTDLPLNMGRIDHGKITAFLDALLPVRRIDVAFICGPFQMNDQVQAALLAAGLPAERI CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHCCCCHHHE HVERFGLALPAGAQADAVMHQALAGDAHSARITIVRDGLRREFRFTREQASILDAASAAG EHHHHCEECCCCCCHHHHHHHHHCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHCCC LELPFACTSGVCGTCRARCLQGRVRMERNFALDQADLDAGFVLSCQCRPLTDSVVLSFDE CCCCCHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCEEEEEECC R C >Mature Secondary Structure SPIFHPLRVRSIEPDTAEAVIVAFDVPPDLHQVFGFTQGQHLTLRADIDGQDLRRAYSI CCCCCCCEEECCCCCCCCEEEEEECCCCHHHHHHCCCCCCEEEEEECCCHHHHHHHHHH CAGIDDGQLRVGVRKVAGGRFSHWLHTRLRVGDTLQVMAPQGRFFVPLQPAAQRHYLGIA HCCCCCCCEEEEHHHHCCCCHHHHHHHHHHCCCEEEEECCCCCEEEECCCCCCCCEEEEE GGSGITPILSLMKTALAREPRSRFTLIYGNRSLQSTMFREELQDLKNRYLARLALHHVFS CCCCHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC AEQTDLPLNMGRIDHGKITAFLDALLPVRRIDVAFICGPFQMNDQVQAALLAAGLPAERI CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHCCCCHHHE HVERFGLALPAGAQADAVMHQALAGDAHSARITIVRDGLRREFRFTREQASILDAASAAG EHHHHCEECCCCCCHHHHHHHHHCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHCCC LELPFACTSGVCGTCRARCLQGRVRMERNFALDQADLDAGFVLSCQCRPLTDSVVLSFDE CCCCCHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCEEEEEECC R C
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: FAD [C]
Metal ions: Iron-Sulfur [C]
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9748275; 9097039; 9278503; 10766858 [H]