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The map label for this gene is rimM

Identifier: 121610858

GI number: 121610858

Start: 4326567

End: 4327145

Strand: Direct

Name: rimM

Synonym: Veis_3940

Alternate gene names: 121610858

Gene position: 4326567-4327145 (Clockwise)

Preceding gene: 121610857

Following gene: 121610859

Centisome position: 77.72

GC content: 67.01

Gene sequence:

>579_bases
ATGCACACCATGGCCACTGCGCTGACGCTGGAGCCGACAGCCCTGCCGTCCGATGCGATCGAGGTCGGGCGCATTGCCGA
TGCCTGGGGGCTGCAGGGCTGGTTCAAGGTGCAGCCCTACAGCGCCGACCCCGAGGCATTGTTTTCCTGCAAGCGCTGGT
ATTTGCAGCCTGCAGCGCGTGGCGCCAAAGCCTTTGGCGGCACGGTGCTGCTGCCCATCCGCCAGGCCAAGGACCATGGC
GGCATGGTGCTGGCCTGGGCGCAGGACATCGATGACCGCAACACCGCCGAGGCCCTGCGCGGCGCGCGCATCTTCGTGCC
GCGGTCGAGCTTTCCATCGCCCCCGCCGGGCGAGTATTACTGGGTCGACCTGATCGGCCTTCAGGTCATCAACCGCCAGG
GCCTGGCGTTGGGCCAGGTGCGCGAACTGCGCGCCACCGGCGCGCAGACCTTGCTGGTGCTGGCCCACGAGCAAGACGGC
AAGGCCGGCAAGCGCATGATTCCTTTCGTCCCGGCCTTCGTGGACCAGGTGGAACTGCCGCAAAAGCGCATCATCGTCGA
CTGGCAGCCCGACTATTGA

Upstream 100 bases:

>100_bases
GGTCAAACAAGCCGCCAAGCAAATGGCCTGACCGGGCGGCACTTCCCGAAAAGGGCGGGTTCCCCGGGCTTGCCCGGCGG
GGCCGGCTCTTTTTTTCATC

Downstream 100 bases:

>100_bases
TCGAAGCGCAGCGCGCACCCATGCGCTTTGACATCATCACCCTGCTTCCCGAACTGTTCGCACCGTTGCTGGCCAGTGGC
GTGACGCGGCGCGCCTACGC

Product: 16S rRNA-processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 192; Mature: 192

Protein sequence:

>192_residues
MHTMATALTLEPTALPSDAIEVGRIADAWGLQGWFKVQPYSADPEALFSCKRWYLQPAARGAKAFGGTVLLPIRQAKDHG
GMVLAWAQDIDDRNTAEALRGARIFVPRSSFPSPPPGEYYWVDLIGLQVINRQGLALGQVRELRATGAQTLLVLAHEQDG
KAGKRMIPFVPAFVDQVELPQKRIIVDWQPDY

Sequences:

>Translated_192_residues
MHTMATALTLEPTALPSDAIEVGRIADAWGLQGWFKVQPYSADPEALFSCKRWYLQPAARGAKAFGGTVLLPIRQAKDHG
GMVLAWAQDIDDRNTAEALRGARIFVPRSSFPSPPPGEYYWVDLIGLQVINRQGLALGQVRELRATGAQTLLVLAHEQDG
KAGKRMIPFVPAFVDQVELPQKRIIVDWQPDY
>Mature_192_residues
MHTMATALTLEPTALPSDAIEVGRIADAWGLQGWFKVQPYSADPEALFSCKRWYLQPAARGAKAFGGTVLLPIRQAKDHG
GMVLAWAQDIDDRNTAEALRGARIFVPRSSFPSPPPGEYYWVDLIGLQVINRQGLALGQVRELRATGAQTLLVLAHEQDG
KAGKRMIPFVPAFVDQVELPQKRIIVDWQPDY

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain

Homologues:

Organism=Escherichia coli, GI87082136, Length=192, Percent_Identity=29.1666666666667, Blast_Score=102, Evalue=2e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMM_VEREI (A1WPU0)

Other databases:

- EMBL:   CP000542
- RefSeq:   YP_998665.1
- ProteinModelPortal:   A1WPU0
- SMR:   A1WPU0
- STRING:   A1WPU0
- GeneID:   4694845
- GenomeReviews:   CP000542_GR
- KEGG:   vei:Veis_3940
- NMPDR:   fig|391735.5.peg.3611
- eggNOG:   COG0806
- HOGENOM:   HBG703775
- OMA:   AYGIRGW
- PhylomeDB:   A1WPU0
- ProtClustDB:   PRK00122
- BioCyc:   VEIS391735:VEIS_3940-MONOMER
- GO:   GO:0005840
- HAMAP:   MF_00014
- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000
- TIGRFAMs:   TIGR02273

Pfam domain/function: PF05239 PRC; PF01782 RimM; SSF50346 PRCH_cytoplasmic; SSF50447 Translat_factor

EC number: NA

Molecular weight: Translated: 21234; Mature: 21234

Theoretical pI: Translated: 7.61; Mature: 7.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHTMATALTLEPTALPSDAIEVGRIADAWGLQGWFKVQPYSADPEALFSCKRWYLQPAAR
CCCCEEEEEECCCCCCCCHHHHCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCHHHC
GAKAFGGTVLLPIRQAKDHGGMVLAWAQDIDDRNTAEALRGARIFVPRSSFPSPPPGEYY
CHHHCCCEEEEEEECCCCCCCEEEEEECCCCCCCHHHHHCCCEEEEECCCCCCCCCCCEE
WVDLIGLQVINRQGLALGQVRELRATGAQTLLVLAHEQDGKAGKRMIPFVPAFVDQVELP
EEEEEEEEHHCCCCCCHHHHHHHHHCCCEEEEEEEECCCCCCCCEECCCHHHHHHHHCCC
QKRIIVDWQPDY
CEEEEEEECCCC
>Mature Secondary Structure
MHTMATALTLEPTALPSDAIEVGRIADAWGLQGWFKVQPYSADPEALFSCKRWYLQPAAR
CCCCEEEEEECCCCCCCCHHHHCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCHHHC
GAKAFGGTVLLPIRQAKDHGGMVLAWAQDIDDRNTAEALRGARIFVPRSSFPSPPPGEYY
CHHHCCCEEEEEEECCCCCCCEEEEEECCCCCCCHHHHHCCCEEEEECCCCCCCCCCCEE
WVDLIGLQVINRQGLALGQVRELRATGAQTLLVLAHEQDGKAGKRMIPFVPAFVDQVELP
EEEEEEEEHHCCCCCCHHHHHHHHHCCCEEEEEEEECCCCCCCCEECCCHHHHHHHHCCC
QKRIIVDWQPDY
CEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA