| Definition | Verminephrobacter eiseniae EF01-2 chromosome, complete genome. |
|---|---|
| Accession | NC_008786 |
| Length | 5,566,749 |
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The map label for this gene is fabG [H]
Identifier: 121610791
GI number: 121610791
Start: 4267520
End: 4268332
Strand: Direct
Name: fabG [H]
Synonym: Veis_3872
Alternate gene names: 121610791
Gene position: 4267520-4268332 (Clockwise)
Preceding gene: 121610790
Following gene: 121610792
Centisome position: 76.66
GC content: 66.42
Gene sequence:
>813_bases ATGGATTTGCAACTGAACGGCAAGGTCGCCTTCGTCACCGGCGCGGGCCAGGGCGTGGGCCGCCGCATCTGCCTGGACCT GGCCGCAGAAGGCGTACGCGTCGCCGTCAATGATCTGTTCGAGGAGCGCGCCCGCACCGTCGTGCGCGAGATCGAGGCCA TCGGCGGGCAGGCCCATGCCGCCGTAGCCGACATCACGCAGGAGCAACAGGTTCACGCCGCCATCGCCGCCGCCGAACAG GCGCTCGGCCCCATCGACATCCTCGTCAACAACGCTGGCGTGCTGGTCGAGCGGCGCGAGAAAGGCGGCCCCGCTCCTCT TTTCGTGGAAACTGATTCAGAGGGCTGGAAACGCATCGTCGACCTCAACGTCTTCGGCATGTTGCACTGCTGCAAGGCCG TATTGCCCGGCATGCGCGAACGCAGCCACGGCAAAATCATCAACATCATGTCCGAGGCCGGCCGGGCCGGCGAAGCCCGG CTGGCCGTCTACTCCGGCGCCAAGGCCGCGATGCTGGGCTTCGCCAAGGCCATCGCGCGCGAACACGGCCAGCACTGCAT CAACGTCAATGTAATCGCGCTGGGAGCGGTCTCGCACGAAGGCATCCGCGAAGGCGCCCTGGCACCCACTTCCACGCCGC AGAACAACGAGCGCCTGTCCAAAATGCTGAACGCCTATCCGATCGCGCGCGGGCTGCAGCGCCTGGCGTGCCCGGAAGAC GTCTCCGGCATGGTGTGCCTGCTGGCATCAGATCGCGCGGCCTTCGTGACCGGCCAGAGCATAGGCATCAGCGGCGGCTT CGTGATGCAGTGA
Upstream 100 bases:
>100_bases GGCTGGAAGGCATGCGCGCCTTCGTCGAAAAGCGCCAGCCCCGATTCATTGGCCGCTGATCCGTATTCATCTCTTCACAA GCACACAAGGAAAACAACGC
Downstream 100 bases:
>100_bases GCGCCATGATCCATACACGGCTCACAGATCTGTTCGGCATCCGGCTACCCGTGTTGGGCGGCGGCATGATGTGGCTATCG GACGCACACTACGTGGCTGC
Product: short-chain dehydrogenase/reductase SDR
Products: NA
Alternate protein names: 3-ketoacyl-acyl carrier protein reductase [H]
Number of amino acids: Translated: 270; Mature: 270
Protein sequence:
>270_residues MDLQLNGKVAFVTGAGQGVGRRICLDLAAEGVRVAVNDLFEERARTVVREIEAIGGQAHAAVADITQEQQVHAAIAAAEQ ALGPIDILVNNAGVLVERREKGGPAPLFVETDSEGWKRIVDLNVFGMLHCCKAVLPGMRERSHGKIINIMSEAGRAGEAR LAVYSGAKAAMLGFAKAIAREHGQHCINVNVIALGAVSHEGIREGALAPTSTPQNNERLSKMLNAYPIARGLQRLACPED VSGMVCLLASDRAAFVTGQSIGISGGFVMQ
Sequences:
>Translated_270_residues MDLQLNGKVAFVTGAGQGVGRRICLDLAAEGVRVAVNDLFEERARTVVREIEAIGGQAHAAVADITQEQQVHAAIAAAEQ ALGPIDILVNNAGVLVERREKGGPAPLFVETDSEGWKRIVDLNVFGMLHCCKAVLPGMRERSHGKIINIMSEAGRAGEAR LAVYSGAKAAMLGFAKAIAREHGQHCINVNVIALGAVSHEGIREGALAPTSTPQNNERLSKMLNAYPIARGLQRLACPED VSGMVCLLASDRAAFVTGQSIGISGGFVMQ >Mature_270_residues MDLQLNGKVAFVTGAGQGVGRRICLDLAAEGVRVAVNDLFEERARTVVREIEAIGGQAHAAVADITQEQQVHAAIAAAEQ ALGPIDILVNNAGVLVERREKGGPAPLFVETDSEGWKRIVDLNVFGMLHCCKAVLPGMRERSHGKIINIMSEAGRAGEAR LAVYSGAKAAMLGFAKAIAREHGQHCINVNVIALGAVSHEGIREGALAPTSTPQNNERLSKMLNAYPIARGLQRLACPED VSGMVCLLASDRAAFVTGQSIGISGGFVMQ
Specific function: 7-Alpha-Dehydroxylation Of Cholic Acid, Yielding Deoxycholic Acid And Lithocholic Acid, Respectively. Highest Affinity With Taurochenodeoxycholic Acid. [C]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI19923817, Length=270, Percent_Identity=29.2592592592593, Blast_Score=97, Evalue=1e-20, Organism=Homo sapiens, GI210032110, Length=231, Percent_Identity=27.7056277056277, Blast_Score=97, Evalue=2e-20, Organism=Homo sapiens, GI32483357, Length=265, Percent_Identity=27.9245283018868, Blast_Score=96, Evalue=3e-20, Organism=Homo sapiens, GI15277342, Length=275, Percent_Identity=26.5454545454545, Blast_Score=96, Evalue=3e-20, Organism=Homo sapiens, GI4504505, Length=205, Percent_Identity=34.1463414634146, Blast_Score=93, Evalue=2e-19, Organism=Homo sapiens, GI7705925, Length=268, Percent_Identity=28.7313432835821, Blast_Score=88, Evalue=1e-17, Organism=Homo sapiens, GI142976729, Length=219, Percent_Identity=24.6575342465753, Blast_Score=87, Evalue=2e-17, Organism=Homo sapiens, GI66933014, Length=267, Percent_Identity=29.2134831460674, Blast_Score=87, Evalue=2e-17, Organism=Homo sapiens, GI40807363, Length=176, Percent_Identity=30.6818181818182, Blast_Score=84, Evalue=1e-16, Organism=Homo sapiens, GI40254992, Length=260, Percent_Identity=28.8461538461538, Blast_Score=84, Evalue=2e-16, Organism=Homo sapiens, GI59889578, Length=237, Percent_Identity=29.1139240506329, Blast_Score=83, Evalue=2e-16, Organism=Homo sapiens, GI4503817, Length=194, Percent_Identity=28.3505154639175, Blast_Score=82, Evalue=7e-16, Organism=Homo sapiens, GI126723750, Length=262, Percent_Identity=25.9541984732824, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI5031737, Length=264, Percent_Identity=26.5151515151515, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI10190704, Length=266, Percent_Identity=30.8270676691729, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI20149619, Length=224, Percent_Identity=27.6785714285714, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI40254986, Length=153, Percent_Identity=29.4117647058824, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI226371731, Length=189, Percent_Identity=29.6296296296296, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI7706318, Length=222, Percent_Identity=29.2792792792793, Blast_Score=69, Evalue=3e-12, Organism=Homo sapiens, GI7705855, Length=180, Percent_Identity=28.8888888888889, Blast_Score=69, Evalue=4e-12, Organism=Homo sapiens, GI210032112, Length=231, Percent_Identity=25.5411255411255, Blast_Score=69, Evalue=4e-12, Organism=Homo sapiens, GI209862901, Length=209, Percent_Identity=29.6650717703349, Blast_Score=69, Evalue=5e-12, Organism=Homo sapiens, GI19923983, Length=209, Percent_Identity=29.6650717703349, Blast_Score=69, Evalue=5e-12, Organism=Homo sapiens, GI126723191, Length=193, Percent_Identity=27.979274611399, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI4758504, Length=276, Percent_Identity=26.4492753623188, Blast_Score=66, Evalue=4e-11, Organism=Homo sapiens, GI32455239, Length=191, Percent_Identity=28.2722513089005, Blast_Score=65, Evalue=5e-11, Organism=Homo sapiens, GI5031765, Length=191, Percent_Identity=28.2722513089005, Blast_Score=65, Evalue=5e-11, Organism=Homo sapiens, GI7657478, Length=202, Percent_Identity=28.2178217821782, Blast_Score=65, Evalue=6e-11, Organism=Homo sapiens, GI31542939, Length=182, Percent_Identity=28.5714285714286, Blast_Score=65, Evalue=9e-11, Organism=Homo sapiens, GI4557649, Length=199, Percent_Identity=27.6381909547739, Blast_Score=65, Evalue=9e-11, Organism=Escherichia coli, GI1787905, Length=269, Percent_Identity=36.8029739776952, Blast_Score=136, Evalue=2e-33, Organism=Escherichia coli, GI1787335, Length=267, Percent_Identity=29.9625468164794, Blast_Score=126, Evalue=2e-30, Organism=Escherichia coli, GI87082100, Length=268, Percent_Identity=33.5820895522388, Blast_Score=114, Evalue=8e-27, Organism=Escherichia coli, GI1790717, Length=267, Percent_Identity=28.8389513108614, Blast_Score=112, Evalue=2e-26, Organism=Escherichia coli, GI1789057, Length=270, Percent_Identity=31.1111111111111, Blast_Score=110, Evalue=8e-26, Organism=Escherichia coli, GI1789208, Length=270, Percent_Identity=30.3703703703704, Blast_Score=105, Evalue=2e-24, Organism=Escherichia coli, GI87082160, Length=271, Percent_Identity=29.1512915129151, Blast_Score=97, Evalue=8e-22, Organism=Escherichia coli, GI1788459, Length=266, Percent_Identity=28.9473684210526, Blast_Score=97, Evalue=2e-21, Organism=Escherichia coli, GI2367175, Length=266, Percent_Identity=31.9548872180451, Blast_Score=96, Evalue=4e-21, Organism=Escherichia coli, GI1789378, Length=265, Percent_Identity=26.0377358490566, Blast_Score=82, Evalue=3e-17, Organism=Escherichia coli, GI1786812, Length=265, Percent_Identity=24.9056603773585, Blast_Score=75, Evalue=6e-15, Organism=Escherichia coli, GI1787820, Length=167, Percent_Identity=32.9341317365269, Blast_Score=74, Evalue=7e-15, Organism=Escherichia coli, GI1787526, Length=268, Percent_Identity=27.2388059701493, Blast_Score=68, Evalue=6e-13, Organism=Escherichia coli, GI2367365, Length=264, Percent_Identity=26.8939393939394, Blast_Score=68, Evalue=7e-13, Organism=Caenorhabditis elegans, GI17568967, Length=224, Percent_Identity=34.8214285714286, Blast_Score=109, Evalue=1e-24, Organism=Caenorhabditis elegans, GI193203117, Length=179, Percent_Identity=30.7262569832402, Blast_Score=103, Evalue=9e-23, Organism=Caenorhabditis elegans, GI193203115, Length=175, Percent_Identity=30.8571428571429, Blast_Score=100, Evalue=6e-22, Organism=Caenorhabditis elegans, GI25147288, Length=272, Percent_Identity=26.8382352941176, Blast_Score=96, Evalue=1e-20, Organism=Caenorhabditis elegans, GI17564282, Length=175, Percent_Identity=29.7142857142857, Blast_Score=95, Evalue=5e-20, Organism=Caenorhabditis elegans, GI17565030, Length=278, Percent_Identity=27.6978417266187, Blast_Score=86, Evalue=1e-17, Organism=Caenorhabditis elegans, GI17567345, Length=212, Percent_Identity=26.8867924528302, Blast_Score=85, Evalue=4e-17, Organism=Caenorhabditis elegans, GI17560676, Length=262, Percent_Identity=26.7175572519084, Blast_Score=85, Evalue=4e-17, Organism=Caenorhabditis elegans, GI17560332, Length=271, Percent_Identity=30.6273062730627, Blast_Score=84, Evalue=9e-17, Organism=Caenorhabditis elegans, GI17555706, Length=270, Percent_Identity=25.9259259259259, Blast_Score=83, Evalue=2e-16, Organism=Caenorhabditis elegans, GI17544670, Length=279, Percent_Identity=26.1648745519713, Blast_Score=82, Evalue=4e-16, Organism=Caenorhabditis elegans, GI17561402, Length=272, Percent_Identity=27.5735294117647, Blast_Score=82, Evalue=4e-16, Organism=Caenorhabditis elegans, GI115534694, Length=267, Percent_Identity=27.3408239700375, Blast_Score=81, Evalue=5e-16, Organism=Caenorhabditis elegans, GI17559104, Length=266, Percent_Identity=27.0676691729323, Blast_Score=80, Evalue=1e-15, Organism=Caenorhabditis elegans, GI17508895, Length=177, Percent_Identity=28.2485875706215, Blast_Score=78, Evalue=6e-15, Organism=Caenorhabditis elegans, GI17560150, Length=275, Percent_Identity=25.8181818181818, Blast_Score=77, Evalue=9e-15, Organism=Caenorhabditis elegans, GI17562910, Length=273, Percent_Identity=26.007326007326, Blast_Score=76, Evalue=1e-14, Organism=Caenorhabditis elegans, GI17531453, Length=272, Percent_Identity=26.4705882352941, Blast_Score=76, Evalue=2e-14, Organism=Caenorhabditis elegans, GI17538480, Length=273, Percent_Identity=27.4725274725275, Blast_Score=76, Evalue=2e-14, Organism=Caenorhabditis elegans, GI17562904, Length=271, Percent_Identity=25.0922509225092, Blast_Score=75, Evalue=3e-14, Organism=Caenorhabditis elegans, GI193204405, Length=269, Percent_Identity=27.1375464684015, Blast_Score=75, Evalue=3e-14, Organism=Caenorhabditis elegans, GI71994600, Length=262, Percent_Identity=23.2824427480916, Blast_Score=75, Evalue=4e-14, Organism=Caenorhabditis elegans, GI17538182, Length=275, Percent_Identity=26.9090909090909, Blast_Score=75, Evalue=5e-14, Organism=Caenorhabditis elegans, GI17551412, Length=272, Percent_Identity=26.8382352941176, Blast_Score=75, Evalue=5e-14, Organism=Caenorhabditis elegans, GI17562906, Length=268, Percent_Identity=24.6268656716418, Blast_Score=74, Evalue=8e-14, Organism=Caenorhabditis elegans, GI17562908, Length=268, Percent_Identity=25.7462686567164, Blast_Score=73, Evalue=2e-13, Organism=Caenorhabditis elegans, GI71994604, Length=261, Percent_Identity=23.7547892720307, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI17560220, Length=270, Percent_Identity=26.6666666666667, Blast_Score=71, Evalue=7e-13, Organism=Caenorhabditis elegans, GI17562990, Length=273, Percent_Identity=26.007326007326, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17538486, Length=268, Percent_Identity=24.2537313432836, Blast_Score=67, Evalue=9e-12, Organism=Caenorhabditis elegans, GI17536025, Length=271, Percent_Identity=25.4612546125461, Blast_Score=65, Evalue=3e-11, Organism=Saccharomyces cerevisiae, GI6322861, Length=217, Percent_Identity=32.7188940092166, Blast_Score=99, Evalue=6e-22, Organism=Saccharomyces cerevisiae, GI6323882, Length=204, Percent_Identity=30.3921568627451, Blast_Score=76, Evalue=7e-15, Organism=Saccharomyces cerevisiae, GI6322226, Length=182, Percent_Identity=29.1208791208791, Blast_Score=73, Evalue=4e-14, Organism=Saccharomyces cerevisiae, GI6324126, Length=267, Percent_Identity=26.2172284644195, Blast_Score=67, Evalue=4e-12, Organism=Drosophila melanogaster, GI18859837, Length=223, Percent_Identity=34.5291479820628, Blast_Score=108, Evalue=5e-24, Organism=Drosophila melanogaster, GI21355319, Length=265, Percent_Identity=27.9245283018868, Blast_Score=92, Evalue=5e-19, Organism=Drosophila melanogaster, GI23397609, Length=267, Percent_Identity=31.4606741573034, Blast_Score=91, Evalue=9e-19, Organism=Drosophila melanogaster, GI24640492, Length=182, Percent_Identity=31.3186813186813, Blast_Score=89, Evalue=3e-18, Organism=Drosophila melanogaster, GI28571526, Length=260, Percent_Identity=29.2307692307692, Blast_Score=88, Evalue=7e-18, Organism=Drosophila melanogaster, GI24639444, Length=268, Percent_Identity=29.1044776119403, Blast_Score=87, Evalue=9e-18, Organism=Drosophila melanogaster, GI21357041, Length=260, Percent_Identity=29.6153846153846, Blast_Score=85, Evalue=5e-17, Organism=Drosophila melanogaster, GI21355631, Length=179, Percent_Identity=30.7262569832402, Blast_Score=82, Evalue=3e-16, Organism=Drosophila melanogaster, GI281364892, Length=181, Percent_Identity=28.1767955801105, Blast_Score=82, Evalue=4e-16, Organism=Drosophila melanogaster, GI24644339, Length=267, Percent_Identity=27.3408239700375, Blast_Score=81, Evalue=7e-16, Organism=Drosophila melanogaster, GI21357673, Length=218, Percent_Identity=28.4403669724771, Blast_Score=79, Evalue=3e-15, Organism=Drosophila melanogaster, GI24649181, Length=176, Percent_Identity=31.8181818181818, Blast_Score=79, Evalue=5e-15, Organism=Drosophila melanogaster, GI24640442, Length=228, Percent_Identity=27.1929824561404, Blast_Score=74, Evalue=7e-14, Organism=Drosophila melanogaster, GI221510726, Length=206, Percent_Identity=29.6116504854369, Blast_Score=74, Evalue=8e-14, Organism=Drosophila melanogaster, GI24581726, Length=217, Percent_Identity=26.7281105990783, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI24584744, Length=189, Percent_Identity=28.042328042328, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI28574402, Length=189, Percent_Identity=28.042328042328, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI24641388, Length=219, Percent_Identity=30.1369863013699, Blast_Score=69, Evalue=2e-12, Organism=Drosophila melanogaster, GI17737361, Length=278, Percent_Identity=27.6978417266187, Blast_Score=69, Evalue=2e-12, Organism=Drosophila melanogaster, GI24644337, Length=265, Percent_Identity=24.1509433962264, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI24648693, Length=227, Percent_Identity=28.1938325991189, Blast_Score=67, Evalue=2e-11, Organism=Drosophila melanogaster, GI21355889, Length=227, Percent_Identity=28.1938325991189, Blast_Score=67, Evalue=2e-11, Organism=Drosophila melanogaster, GI21358495, Length=198, Percent_Identity=27.2727272727273, Blast_Score=66, Evalue=3e-11, Organism=Drosophila melanogaster, GI161076933, Length=213, Percent_Identity=27.6995305164319, Blast_Score=65, Evalue=4e-11, Organism=Drosophila melanogaster, GI24584748, Length=213, Percent_Identity=27.6995305164319, Blast_Score=65, Evalue=6e-11, Organism=Drosophila melanogaster, GI24584752, Length=216, Percent_Identity=26.8518518518519, Blast_Score=64, Evalue=7e-11, Organism=Drosophila melanogaster, GI21356301, Length=190, Percent_Identity=26.8421052631579, Blast_Score=64, Evalue=1e-10,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011284 - InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: =1.1.1.100 [H]
Molecular weight: Translated: 28466; Mature: 28466
Theoretical pI: Translated: 7.15; Mature: 7.15
Prosite motif: PS00061 ADH_SHORT ; PS00070 ALDEHYDE_DEHYDR_CYS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.2 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 5.2 %Cys+Met (Translated Protein) 2.2 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 5.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDLQLNGKVAFVTGAGQGVGRRICLDLAAEGVRVAVNDLFEERARTVVREIEAIGGQAHA CCEEECCEEEEEEECCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHH AVADITQEQQVHAAIAAAEQALGPIDILVNNAGVLVERREKGGPAPLFVETDSEGWKRIV HHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCEEEEECCCCCCCCEEEEECCCCHHEEE DLNVFGMLHCCKAVLPGMRERSHGKIINIMSEAGRAGEARLAVYSGAKAAMLGFAKAIAR EHHHHHHHHHHHHHCCCCCCCCCCCEEEEHHHCCCCCCEEEEEECCCHHHHHHHHHHHHH EHGQHCINVNVIALGAVSHEGIREGALAPTSTPQNNERLSKMLNAYPIARGLQRLACPED HCCCEEEEEEEEEEECCCCCCHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC VSGMVCLLASDRAAFVTGQSIGISGGFVMQ CCCEEEEEECCCEEEEECCCCCCCCCEEEC >Mature Secondary Structure MDLQLNGKVAFVTGAGQGVGRRICLDLAAEGVRVAVNDLFEERARTVVREIEAIGGQAHA CCEEECCEEEEEEECCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHH AVADITQEQQVHAAIAAAEQALGPIDILVNNAGVLVERREKGGPAPLFVETDSEGWKRIV HHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCEEEEECCCCCCCCEEEEECCCCHHEEE DLNVFGMLHCCKAVLPGMRERSHGKIINIMSEAGRAGEARLAVYSGAKAAMLGFAKAIAR EHHHHHHHHHHHHHCCCCCCCCCCCEEEEHHHCCCCCCEEEEEECCCHHHHHHHHHHHHH EHGQHCINVNVIALGAVSHEGIREGALAPTSTPQNNERLSKMLNAYPIARGLQRLACPED HCCCEEEEEEEEEEECCCCCCHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC VSGMVCLLASDRAAFVTGQSIGISGGFVMQ CCCEEEEEECCCEEEEECCCCCCCCCEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8759840; 9384377; 9534248; 8654983 [H]