BacMap

Definition	Verminephrobacter eiseniae EF01-2 chromosome, complete genome.
Accession	NC_008786
Length	5,566,749

Click here to switch to the map view.

The map label for this gene is crt [H]

Identifier: 121610790

GI number: 121610790

Start: 4266687

End: 4267478

Strand: Direct

Name: crt [H]

Synonym: Veis_3871

Alternate gene names: 121610790

Gene position: 4266687-4267478 (Clockwise)

Preceding gene: 121610789

Following gene: 121610791

Centisome position: 76.65

GC content: 68.56

Gene sequence:

>792_bases
ATGGATTACTCGACCCTGTTGTACGAAGTCGCCGAGGGAGTGGCGTTGATCCGGCTGAACCGCCCGGAGCGCATGAATGC
CATCGGCGGCGCTATGAAAACAGAACTCCGGCAGGCCCTGCTCGAGCGTGCGCGCCAGGACCCGCAAGTGCGCTGCGTGA
TCCTCACGGGTGCGGGCGAGCGGGCCTTCTGCGCGGGCGCCGATATCAAGGAGCGCGCCGGTCAGGCCTTGCCCCAGCCG
GAATACCACCTGCAGCAGAAGGCAACGCTCGCGCTGTTCCGCGAGATGGAACAGTTCGAGAAACCGCTGATCGCCGCGAT
CAACGGCGTCGCCATGGGTGGCGGGCTGGAGATCGCGCTGTGCTGCGACGTGCGTATCGCCGCGCGCGGCGCCCGGCTGG
GCTTGCCCGAGGCCAAGATCGGCGCCTTGCCCGCGGCGGGCGGCACGCAGCGGCTGCCACGCCTGGTCGGCCCTGGCATC
GCCAAGGAACTGATGCTCACGGGCGACGCCATCGGCGCCGAGCGCGCGCTGGCCATCGGCCTGATCAACCAAGTGGTCGA
ACCCGAGGCGCTGCTGCCCACGGCACTGGCCATGGCTTCACGCATGGCGGCCAACGCGCCGCTGGCGCTGCGCCACATCA
AGCATGCCGTCGACCAGGGCATGCAGGTCGGTATCGACGCAGGACTGGAGTACGAGCGCTATGCCGCCGCGCTGGTGGTG
TCCAGCGAAGACCGGCTGGAAGGCATGCGCGCCTTCGTCGAAAAGCGCCAGCCCCGATTCATTGGCCGCTGA

Upstream 100 bases:

>100_bases
GCCAGCACCCCGGTGCGCGCCTGGCCTTGGCCCACATGATCGGCCTGGGCTCGGTCGCCGTGGCCCATGTGCTGGCTCGC
GCCGGAACCTGAAGAAACAT

Downstream 100 bases:

>100_bases
TCCGTATTCATCTCTTCACAAGCACACAAGGAAAACAACGCATGGATTTGCAACTGAACGGCAAGGTCGCCTTCGTCACC
GGCGCGGGCCAGGGCGTGGG

Product: enoyl-CoA hydratase/isomerase

Products: NA

Alternate protein names: Crotonase [H]

Number of amino acids: Translated: 263; Mature: 263

Protein sequence:

>263_residues
MDYSTLLYEVAEGVALIRLNRPERMNAIGGAMKTELRQALLERARQDPQVRCVILTGAGERAFCAGADIKERAGQALPQP
EYHLQQKATLALFREMEQFEKPLIAAINGVAMGGGLEIALCCDVRIAARGARLGLPEAKIGALPAAGGTQRLPRLVGPGI
AKELMLTGDAIGAERALAIGLINQVVEPEALLPTALAMASRMAANAPLALRHIKHAVDQGMQVGIDAGLEYERYAAALVV
SSEDRLEGMRAFVEKRQPRFIGR

Sequences:

>Translated_263_residues
MDYSTLLYEVAEGVALIRLNRPERMNAIGGAMKTELRQALLERARQDPQVRCVILTGAGERAFCAGADIKERAGQALPQP
EYHLQQKATLALFREMEQFEKPLIAAINGVAMGGGLEIALCCDVRIAARGARLGLPEAKIGALPAAGGTQRLPRLVGPGI
AKELMLTGDAIGAERALAIGLINQVVEPEALLPTALAMASRMAANAPLALRHIKHAVDQGMQVGIDAGLEYERYAAALVV
SSEDRLEGMRAFVEKRQPRFIGR
>Mature_263_residues
MDYSTLLYEVAEGVALIRLNRPERMNAIGGAMKTELRQALLERARQDPQVRCVILTGAGERAFCAGADIKERAGQALPQP
EYHLQQKATLALFREMEQFEKPLIAAINGVAMGGGLEIALCCDVRIAARGARLGLPEAKIGALPAAGGTQRLPRLVGPGI
AKELMLTGDAIGAERALAIGLINQVVEPEALLPTALAMASRMAANAPLALRHIKHAVDQGMQVGIDAGLEYERYAAALVV
SSEDRLEGMRAFVEKRQPRFIGR

Specific function: Could Possibly Oxidizes Fatty Acids Using Specific Components (By Similarity). [C]

COG id: COG1024

COG function: function code I; Enoyl-CoA hydratase/carnithine racemase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the enoyl-CoA hydratase/isomerase family [H]

Homologues:

Organism=Homo sapiens, GI194097323, Length=247, Percent_Identity=40.080971659919, Blast_Score=174, Evalue=9e-44,
Organism=Homo sapiens, GI4502327, Length=260, Percent_Identity=38.0769230769231, Blast_Score=142, Evalue=2e-34,
Organism=Homo sapiens, GI20127408, Length=184, Percent_Identity=41.304347826087, Blast_Score=132, Evalue=4e-31,
Organism=Homo sapiens, GI150378541, Length=256, Percent_Identity=35.15625, Blast_Score=128, Evalue=5e-30,
Organism=Homo sapiens, GI68989263, Length=201, Percent_Identity=39.3034825870647, Blast_Score=108, Evalue=7e-24,
Organism=Homo sapiens, GI70995211, Length=257, Percent_Identity=27.6264591439689, Blast_Score=100, Evalue=1e-21,
Organism=Homo sapiens, GI37594471, Length=187, Percent_Identity=33.1550802139037, Blast_Score=91, Evalue=9e-19,
Organism=Homo sapiens, GI37594469, Length=187, Percent_Identity=33.1550802139037, Blast_Score=91, Evalue=1e-18,
Organism=Homo sapiens, GI157694516, Length=231, Percent_Identity=26.8398268398268, Blast_Score=82, Evalue=4e-16,
Organism=Homo sapiens, GI213417737, Length=231, Percent_Identity=26.8398268398268, Blast_Score=82, Evalue=5e-16,
Organism=Homo sapiens, GI31542718, Length=252, Percent_Identity=27.3809523809524, Blast_Score=82, Evalue=7e-16,
Organism=Homo sapiens, GI116235487, Length=248, Percent_Identity=25.8064516129032, Blast_Score=80, Evalue=1e-15,
Organism=Homo sapiens, GI45643119, Length=219, Percent_Identity=26.9406392694064, Blast_Score=80, Evalue=1e-15,
Organism=Homo sapiens, GI260275230, Length=219, Percent_Identity=26.9406392694064, Blast_Score=80, Evalue=1e-15,
Organism=Homo sapiens, GI260274832, Length=219, Percent_Identity=26.9406392694064, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI221136756, Length=267, Percent_Identity=24.3445692883895, Blast_Score=79, Evalue=4e-15,
Organism=Homo sapiens, GI221136753, Length=267, Percent_Identity=24.3445692883895, Blast_Score=79, Evalue=4e-15,
Organism=Homo sapiens, GI221307494, Length=267, Percent_Identity=24.3445692883895, Blast_Score=79, Evalue=5e-15,
Organism=Homo sapiens, GI25453481, Length=269, Percent_Identity=24.5353159851301, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI51538573, Length=269, Percent_Identity=24.5353159851301, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI62530384, Length=194, Percent_Identity=32.9896907216495, Blast_Score=75, Evalue=5e-14,
Organism=Homo sapiens, GI4757968, Length=268, Percent_Identity=24.2537313432836, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI49355787, Length=268, Percent_Identity=24.2537313432836, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI261878539, Length=104, Percent_Identity=43.2692307692308, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI4757966, Length=258, Percent_Identity=24.4186046511628, Blast_Score=72, Evalue=5e-13,
Organism=Homo sapiens, GI51538581, Length=258, Percent_Identity=24.4186046511628, Blast_Score=72, Evalue=5e-13,
Organism=Homo sapiens, GI295842266, Length=192, Percent_Identity=31.7708333333333, Blast_Score=66, Evalue=3e-11,
Organism=Escherichia coli, GI1787659, Length=260, Percent_Identity=41.5384615384615, Blast_Score=185, Evalue=3e-48,
Organism=Escherichia coli, GI221142681, Length=251, Percent_Identity=38.2470119521912, Blast_Score=162, Evalue=2e-41,
Organism=Escherichia coli, GI1787660, Length=260, Percent_Identity=38.4615384615385, Blast_Score=141, Evalue=3e-35,
Organism=Escherichia coli, GI87082183, Length=271, Percent_Identity=33.9483394833948, Blast_Score=136, Evalue=1e-33,
Organism=Escherichia coli, GI1788597, Length=261, Percent_Identity=33.3333333333333, Blast_Score=130, Evalue=6e-32,
Organism=Escherichia coli, GI1788682, Length=204, Percent_Identity=35.7843137254902, Blast_Score=114, Evalue=7e-27,
Organism=Escherichia coli, GI1790281, Length=204, Percent_Identity=36.7647058823529, Blast_Score=108, Evalue=4e-25,
Organism=Caenorhabditis elegans, GI25145438, Length=250, Percent_Identity=39.6, Blast_Score=185, Evalue=2e-47,
Organism=Caenorhabditis elegans, GI17554946, Length=250, Percent_Identity=38, Blast_Score=173, Evalue=8e-44,
Organism=Caenorhabditis elegans, GI17540714, Length=234, Percent_Identity=36.3247863247863, Blast_Score=158, Evalue=2e-39,
Organism=Caenorhabditis elegans, GI17558304, Length=189, Percent_Identity=35.4497354497354, Blast_Score=110, Evalue=5e-25,
Organism=Caenorhabditis elegans, GI17560910, Length=250, Percent_Identity=28.4, Blast_Score=109, Evalue=1e-24,
Organism=Caenorhabditis elegans, GI17534483, Length=238, Percent_Identity=28.9915966386555, Blast_Score=109, Evalue=2e-24,
Organism=Caenorhabditis elegans, GI17536985, Length=258, Percent_Identity=26.3565891472868, Blast_Score=108, Evalue=2e-24,
Organism=Caenorhabditis elegans, GI17508953, Length=178, Percent_Identity=35.9550561797753, Blast_Score=105, Evalue=3e-23,
Organism=Caenorhabditis elegans, GI25144276, Length=178, Percent_Identity=35.9550561797753, Blast_Score=105, Evalue=3e-23,
Organism=Caenorhabditis elegans, GI17508951, Length=178, Percent_Identity=35.9550561797753, Blast_Score=105, Evalue=3e-23,
Organism=Caenorhabditis elegans, GI17549921, Length=207, Percent_Identity=28.0193236714976, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI25144160, Length=195, Percent_Identity=29.2307692307692, Blast_Score=78, Evalue=5e-15,
Organism=Caenorhabditis elegans, GI25144157, Length=195, Percent_Identity=29.2307692307692, Blast_Score=78, Evalue=6e-15,
Organism=Caenorhabditis elegans, GI17540306, Length=268, Percent_Identity=27.6119402985075, Blast_Score=74, Evalue=6e-14,
Organism=Caenorhabditis elegans, GI25141363, Length=181, Percent_Identity=28.7292817679558, Blast_Score=71, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI17535521, Length=182, Percent_Identity=30.7692307692308, Blast_Score=70, Evalue=1e-12,
Organism=Saccharomyces cerevisiae, GI6320241, Length=195, Percent_Identity=27.6923076923077, Blast_Score=96, Evalue=7e-21,
Organism=Drosophila melanogaster, GI24653139, Length=256, Percent_Identity=40.234375, Blast_Score=180, Evalue=8e-46,
Organism=Drosophila melanogaster, GI20129971, Length=262, Percent_Identity=38.9312977099237, Blast_Score=180, Evalue=1e-45,
Organism=Drosophila melanogaster, GI24653477, Length=262, Percent_Identity=38.9312977099237, Blast_Score=180, Evalue=1e-45,
Organism=Drosophila melanogaster, GI21357171, Length=258, Percent_Identity=28.2945736434109, Blast_Score=100, Evalue=8e-22,
Organism=Drosophila melanogaster, GI24583077, Length=186, Percent_Identity=35.4838709677419, Blast_Score=97, Evalue=1e-20,
Organism=Drosophila melanogaster, GI24583079, Length=186, Percent_Identity=35.4838709677419, Blast_Score=97, Evalue=1e-20,
Organism=Drosophila melanogaster, GI19921000, Length=186, Percent_Identity=35.4838709677419, Blast_Score=97, Evalue=1e-20,
Organism=Drosophila melanogaster, GI19920382, Length=260, Percent_Identity=26.1538461538462, Blast_Score=96, Evalue=2e-20,
Organism=Drosophila melanogaster, GI24650670, Length=252, Percent_Identity=30.5555555555556, Blast_Score=96, Evalue=2e-20,
Organism=Drosophila melanogaster, GI28571729, Length=156, Percent_Identity=32.0512820512821, Blast_Score=82, Evalue=2e-16,
Organism=Drosophila melanogaster, GI28571730, Length=156, Percent_Identity=32.0512820512821, Blast_Score=82, Evalue=3e-16,
Organism=Drosophila melanogaster, GI19922422, Length=266, Percent_Identity=24.0601503759398, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI24654903, Length=210, Percent_Identity=25.7142857142857, Blast_Score=75, Evalue=6e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014748
- InterPro:   IPR001753
- InterPro:   IPR018376 [H]

Pfam domain/function: PF00378 ECH [H]

EC number: =4.2.1.55 [H]

Molecular weight: Translated: 28226; Mature: 28226

Theoretical pI: Translated: 8.32; Mature: 8.32

Prosite motif: PS00166 ENOYL_COA_HYDRATASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDYSTLLYEVAEGVALIRLNRPERMNAIGGAMKTELRQALLERARQDPQVRCVILTGAGE
CCHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCC
RAFCAGADIKERAGQALPQPEYHLQQKATLALFREMEQFEKPLIAAINGVAMGGGLEIAL
CEEECCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEECCCEEEEE
CCDVRIAARGARLGLPEAKIGALPAAGGTQRLPRLVGPGIAKELMLTGDAIGAERALAIG
EECCHHECCCCCCCCCCHHHCCCCCCCCHHHHHHHHCCCHHHHHHHCCCCCCHHHHHHHH
LINQVVEPEALLPTALAMASRMAANAPLALRHIKHAVDQGMQVGIDAGLEYERYAAALVV
HHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCEECCCCCCCHHHHHEEEEE
SSEDRLEGMRAFVEKRQPRFIGR
CCHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MDYSTLLYEVAEGVALIRLNRPERMNAIGGAMKTELRQALLERARQDPQVRCVILTGAGE
CCHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCC
RAFCAGADIKERAGQALPQPEYHLQQKATLALFREMEQFEKPLIAAINGVAMGGGLEIAL
CEEECCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEECCCEEEEE
CCDVRIAARGARLGLPEAKIGALPAAGGTQRLPRLVGPGIAKELMLTGDAIGAERALAIG
EECCHHECCCCCCCCCCHHHCCCCCCCCHHHHHHHHCCCHHHHHHHCCCCCCHHHHHHHH
LINQVVEPEALLPTALAMASRMAANAPLALRHIKHAVDQGMQVGIDAGLEYERYAAALVV
HHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCEECCCCCCCHHHHHEEEEE
SSEDRLEGMRAFVEKRQPRFIGR
CCHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8655474; 11466286 [H]