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The map label for this gene is ydcC [C]

Identifier: 121610661

GI number: 121610661

Start: 4129403

End: 4129891

Strand: Direct

Name: ydcC [C]

Synonym: Veis_3736

Alternate gene names: 121610661

Gene position: 4129403-4129891 (Clockwise)

Preceding gene: 121610659

Following gene: 121610662

Centisome position: 74.18

GC content: 63.6

Gene sequence:

>489_bases
GTGGGTGGCCTGGTCATCGCCATCGATGGCAAGAGTCTGCGCGGGGCGGCACGTCCGGCCTGCGGGTTGCGCGCACTGCA
TCAGGTATCGGCCTACGCCGCCGAATATGGCCTGACGCTGGGACAATTGGCCTGCCAAGAAAAGTCCAACGAAATCACGG
CCATTGGCGAGTTGCTGCCAACGCTGGCGCCCGAGGGAGCGGTTGTCACCATCGATGCCATCGGCTGCCAGAGCGCGATT
GCCGAGCAGATCGTGGACGGTGGTGGCGATTACGTGCTTGCCGTCAAGGACAACCAACCACATCTGGCCCACGCCTTGCG
CGACTTCTTTGGCACGCTCGACGCGCCCGGCGACCCGGTCAGACAGACCTGCGTGCATGAAACGCTGGACAAGGGCCATG
GCCGCATTGAAACCCGTCGCTGCACGGCGGTGGGCGATCTGGATTGGCTGGCTACCCTGGGGCTCAAGGAACGCTGGAAG
AAGCATTGA

Upstream 100 bases:

>100_bases
ATTCCCGGGCCCGACACCATCCGTCGGGTATTTGAGGCGCTCTCGCCAAGGCAGTTGTCGACCTGCTTGAGTTCCTGGAT
GGCGCCAAGTCTGTCCTGCG

Downstream 100 bases:

>100_bases
AAATGGCTTGCACTGGTGCCTGGATGTGACCTTTGGAGAGGACGCCTGCCCCATCCGGCTACGCAATGCCGCACTCAACT
TCTCATTGCTGCGCCGTGCC

Product: transposase, IS4 family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 162; Mature: 161

Protein sequence:

>162_residues
MGGLVIAIDGKSLRGAARPACGLRALHQVSAYAAEYGLTLGQLACQEKSNEITAIGELLPTLAPEGAVVTIDAIGCQSAI
AEQIVDGGGDYVLAVKDNQPHLAHALRDFFGTLDAPGDPVRQTCVHETLDKGHGRIETRRCTAVGDLDWLATLGLKERWK
KH

Sequences:

>Translated_162_residues
MGGLVIAIDGKSLRGAARPACGLRALHQVSAYAAEYGLTLGQLACQEKSNEITAIGELLPTLAPEGAVVTIDAIGCQSAI
AEQIVDGGGDYVLAVKDNQPHLAHALRDFFGTLDAPGDPVRQTCVHETLDKGHGRIETRRCTAVGDLDWLATLGLKERWK
KH
>Mature_161_residues
GGLVIAIDGKSLRGAARPACGLRALHQVSAYAAEYGLTLGQLACQEKSNEITAIGELLPTLAPEGAVVTIDAIGCQSAIA
EQIVDGGGDYVLAVKDNQPHLAHALRDFFGTLDAPGDPVRQTCVHETLDKGHGRIETRRCTAVGDLDWLATLGLKERWKK
H

Specific function: Unknown

COG id: COG5433

COG function: function code L; Transposase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787733, Length=135, Percent_Identity=44.4444444444444, Blast_Score=105, Evalue=1e-24,
Organism=Escherichia coli, GI1789896, Length=135, Percent_Identity=43.7037037037037, Blast_Score=102, Evalue=1e-23,
Organism=Escherichia coli, GI1786924, Length=135, Percent_Identity=42.962962962963, Blast_Score=99, Evalue=2e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002559 [H]

Pfam domain/function: PF01609 Transposase_11 [H]

EC number: NA

Molecular weight: Translated: 17179; Mature: 17048

Theoretical pI: Translated: 6.23; Mature: 6.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.1 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
3.1 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGGLVIAIDGKSLRGAARPACGLRALHQVSAYAAEYGLTLGQLACQEKSNEITAIGELLP
CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHH
TLAPEGAVVTIDAIGCQSAIAEQIVDGGGDYVLAVKDNQPHLAHALRDFFGTLDAPGDPV
HCCCCCCEEEEECCCHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCHH
RQTCVHETLDKGHGRIETRRCTAVGDLDWLATLGLKERWKKH
HHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
GGLVIAIDGKSLRGAARPACGLRALHQVSAYAAEYGLTLGQLACQEKSNEITAIGELLP
CCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHH
TLAPEGAVVTIDAIGCQSAIAEQIVDGGGDYVLAVKDNQPHLAHALRDFFGTLDAPGDPV
HCCCCCCEEEEECCCHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCHH
RQTCVHETLDKGHGRIETRRCTAVGDLDWLATLGLKERWKKH
HHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2687254 [H]