| Definition | Verminephrobacter eiseniae EF01-2 chromosome, complete genome. |
|---|---|
| Accession | NC_008786 |
| Length | 5,566,749 |
Click here to switch to the map view.
The map label for this gene is dinG [H]
Identifier: 121610597
GI number: 121610597
Start: 4057356
End: 4059350
Strand: Direct
Name: dinG [H]
Synonym: Veis_3670
Alternate gene names: 121610597
Gene position: 4057356-4059350 (Clockwise)
Preceding gene: 121610596
Following gene: 121610600
Centisome position: 72.89
GC content: 64.86
Gene sequence:
>1995_bases ATGGATGAACTCCTCCAACCGCAGACAACGATGGCCAACCACCACCAGACCGATCTCGTGGCGCAGGTATACCGCGCCCT CACCAGTGTCATGCCAGGCTTCGTTGCCCGGGCGCAGCAGAAAACCATGATCAGCCGAACCCTGGGCCTGATGACCCGCC AGGCGCTGGGCGTCATCGAGGCGCCCACGGGCATCGGCAAGAGCATGGGCTACCTCATTGCCGGCATCGCTTCGGCGGTC ACCGAAGACAAGGTGCTGGTGGTTTCCACGGCCACCGCATCGCTGCAGGACCAACTGGCCAGCAAGGACCTGCCTCTGGC ACTGCGCGCCTTCGCGCTGGCCGGTGTGTGTGGCATCGATGTCGTCGTCGCCAAGGGCCGCGAGCGCCACGCCTGTCCCA TGAAGATGCATGCCTTCGCGGGGGGCACCCAGGACTTGTTCGCCGCTGGCGACGACCACACGGCGCTGACCCAGGCCGTG GACCTCTGGCGCCAGGGCCAATGGGCCGGCGTGCGCGACGATCTGCCTGTTCGCCTGCACCAGCGGGCGTGGATGAGGAT CGCCAACACGGCCGCAAGCTGCCCGGGCCAGAAATGCCCCGAGTTCGATCTGTGCCCGTACTACGCAACCCAGGCTGCGC TCAAAACCGCCCGCGTCATCATCACCAACCACGACTATCTGCTGTCCACCCTGTCGAACGTGCCCCACAGTGTGTTCTCC GATGGCCACAAGTGCCTCTTCGTGTTCGATGAGGCCCATCACCTGAGCGACAAGCTGCTCAACGCCTTCGCCCGGCGTCT CGACCTGGCCGCTTTCCCGAGCGAGGTCATCGAGGCCATCGCCCAGCTCTGCCCTGGAATGGTCGGCCTGGATTTTGCGG CCGAGCGCGTGCGGGGGATCTGGCGCGCATGCGAGGACGCCGCCCTGACCATGCTGGGCGATGGCAGCCAGCACCGCTTT ACCTTGAACGAGGTACCGCCCCAGTTCCGGCGACTCTTGCTCGACCTCAAGGCGCAACTGAGCGGGATGCGCGCTACCTT GAAGGAAGTCAAGGAGTCGAACGCGCGTTTCAGGAACAAGGCCGTGGCAATGCTGGCCGATTCGCGCATCGGGCAGTTGT CCGGTGACGTGCAGGAGGCCATCGATTGCATCGAGGAATTCACCGGCGACGATCTGGTGGCCCGCTGGCTCGCGCGCGGG CGCAACAGCATCGACCTGAACTGTTCGCCCTTCGACGGCGCCAGGAAGGCCCGCAAGCACCTGTGGCCCGTCGTCAAGAC CGGCTTGCTGACCTCGGCGACTTTGACCACCCTGGGCAGCTTCGAGCCCATGCGCATCGCCCTGGGCCTGCCCGCCGAAA CCAGCACCCTTAAGCTGGACAGCCCTTTCGATTACGGCCGCGCCCGGCTGATCGTGCCCAGGCTGTGCGTGGAAGCGTCC GACCCGGCGCATTCCCGCATGGTGGCCGCTTTCCTCAAGGACCATGCCCTGGGTGCCGCCAAACACAGGGGCGTGCTCGT GTACTTCACCAGCAAGAAGCTCATGCTCGATTGCATGGCGGCCATCCCGACAGCGCAGCGCGGCTGCATCCTGCTGCAGG GGCAATGGCAGCCCTGGGCCATGCTCGAGGAGCACAAGCGCCGCATCGACGCAGGTGTGCGCAGCATCATCTTCGGCCTG GACAGCATCGGCGAGGGCGTCGATCTGCCGGGCGAGTATTGCACGCGGGTGATCATGACGCGCCTGCCGTTTCCTTGCCC CGATGATCCGGTGCTCTGCACCCACGCCGAATATCTGCGCAGCAAAGGCAAGGATCCGTTTCACATTCTGACCATGCCCA AGGTCGGGCTGAAGTTCGCCCAGGTTGCCGGACGCCTGATGCGGCGCGAGCAGGACTGGGGCGAGTTCTACGTGCTCGAC AAACGCTTGAGATCCAAGCGCTATGGTGCCCAGATCGTCAAGAGCACTCCTTTCCGGACGATGGAGATGGGTTGA
Upstream 100 bases:
>100_bases ATCGGAAATCAGGTGCGCTTCATCGAGGCTGGCGCCAAGCGTTGAATCCTCTTGCGCCTATCCCGCATTCAGACTTGATC CGACGCCATCGGGTGGGAGC
Downstream 100 bases:
>100_bases GGCGGCTGACGCCGCCAATGCGATGAAAAATACCGCGTTCAGCAAATTTCATGCTGCGCTCAACTCCTGGGACAGCTCGG GATGCTTGACGAGGAGCCGC
Product: helicase c2
Products: NA
Alternate protein names: DNA-damage-inducible protein G [H]
Number of amino acids: Translated: 664; Mature: 664
Protein sequence:
>664_residues MDELLQPQTTMANHHQTDLVAQVYRALTSVMPGFVARAQQKTMISRTLGLMTRQALGVIEAPTGIGKSMGYLIAGIASAV TEDKVLVVSTATASLQDQLASKDLPLALRAFALAGVCGIDVVVAKGRERHACPMKMHAFAGGTQDLFAAGDDHTALTQAV DLWRQGQWAGVRDDLPVRLHQRAWMRIANTAASCPGQKCPEFDLCPYYATQAALKTARVIITNHDYLLSTLSNVPHSVFS DGHKCLFVFDEAHHLSDKLLNAFARRLDLAAFPSEVIEAIAQLCPGMVGLDFAAERVRGIWRACEDAALTMLGDGSQHRF TLNEVPPQFRRLLLDLKAQLSGMRATLKEVKESNARFRNKAVAMLADSRIGQLSGDVQEAIDCIEEFTGDDLVARWLARG RNSIDLNCSPFDGARKARKHLWPVVKTGLLTSATLTTLGSFEPMRIALGLPAETSTLKLDSPFDYGRARLIVPRLCVEAS DPAHSRMVAAFLKDHALGAAKHRGVLVYFTSKKLMLDCMAAIPTAQRGCILLQGQWQPWAMLEEHKRRIDAGVRSIIFGL DSIGEGVDLPGEYCTRVIMTRLPFPCPDDPVLCTHAEYLRSKGKDPFHILTMPKVGLKFAQVAGRLMRREQDWGEFYVLD KRLRSKRYGAQIVKSTPFRTMEMG
Sequences:
>Translated_664_residues MDELLQPQTTMANHHQTDLVAQVYRALTSVMPGFVARAQQKTMISRTLGLMTRQALGVIEAPTGIGKSMGYLIAGIASAV TEDKVLVVSTATASLQDQLASKDLPLALRAFALAGVCGIDVVVAKGRERHACPMKMHAFAGGTQDLFAAGDDHTALTQAV DLWRQGQWAGVRDDLPVRLHQRAWMRIANTAASCPGQKCPEFDLCPYYATQAALKTARVIITNHDYLLSTLSNVPHSVFS DGHKCLFVFDEAHHLSDKLLNAFARRLDLAAFPSEVIEAIAQLCPGMVGLDFAAERVRGIWRACEDAALTMLGDGSQHRF TLNEVPPQFRRLLLDLKAQLSGMRATLKEVKESNARFRNKAVAMLADSRIGQLSGDVQEAIDCIEEFTGDDLVARWLARG RNSIDLNCSPFDGARKARKHLWPVVKTGLLTSATLTTLGSFEPMRIALGLPAETSTLKLDSPFDYGRARLIVPRLCVEAS DPAHSRMVAAFLKDHALGAAKHRGVLVYFTSKKLMLDCMAAIPTAQRGCILLQGQWQPWAMLEEHKRRIDAGVRSIIFGL DSIGEGVDLPGEYCTRVIMTRLPFPCPDDPVLCTHAEYLRSKGKDPFHILTMPKVGLKFAQVAGRLMRREQDWGEFYVLD KRLRSKRYGAQIVKSTPFRTMEMG >Mature_664_residues MDELLQPQTTMANHHQTDLVAQVYRALTSVMPGFVARAQQKTMISRTLGLMTRQALGVIEAPTGIGKSMGYLIAGIASAV TEDKVLVVSTATASLQDQLASKDLPLALRAFALAGVCGIDVVVAKGRERHACPMKMHAFAGGTQDLFAAGDDHTALTQAV DLWRQGQWAGVRDDLPVRLHQRAWMRIANTAASCPGQKCPEFDLCPYYATQAALKTARVIITNHDYLLSTLSNVPHSVFS DGHKCLFVFDEAHHLSDKLLNAFARRLDLAAFPSEVIEAIAQLCPGMVGLDFAAERVRGIWRACEDAALTMLGDGSQHRF TLNEVPPQFRRLLLDLKAQLSGMRATLKEVKESNARFRNKAVAMLADSRIGQLSGDVQEAIDCIEEFTGDDLVARWLARG RNSIDLNCSPFDGARKARKHLWPVVKTGLLTSATLTTLGSFEPMRIALGLPAETSTLKLDSPFDYGRARLIVPRLCVEAS DPAHSRMVAAFLKDHALGAAKHRGVLVYFTSKKLMLDCMAAIPTAQRGCILLQGQWQPWAMLEEHKRRIDAGVRSIIFGL DSIGEGVDLPGEYCTRVIMTRLPFPCPDDPVLCTHAEYLRSKGKDPFHILTMPKVGLKFAQVAGRLMRREQDWGEFYVLD KRLRSKRYGAQIVKSTPFRTMEMG
Specific function: Probable helicase involved in DNA repair and perhaps also replication [H]
COG id: COG1199
COG function: function code KL; Rad3-related DNA helicases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 helicase C-terminal domain [H]
Homologues:
Organism=Escherichia coli, GI1787018, Length=705, Percent_Identity=29.9290780141844, Blast_Score=280, Evalue=2e-76, Organism=Escherichia coli, GI1788110, Length=648, Percent_Identity=28.0864197530864, Blast_Score=174, Evalue=1e-44,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014001 - InterPro: IPR010614 - InterPro: IPR011545 - InterPro: IPR014013 - InterPro: IPR006555 - InterPro: IPR001650 [H]
Pfam domain/function: PF00270 DEAD; PF06733 DEAD_2 [H]
EC number: =3.6.4.12 [H]
Molecular weight: Translated: 73220; Mature: 73220
Theoretical pI: Translated: 8.71; Mature: 8.71
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.4 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 5.9 %Cys+Met (Translated Protein) 2.4 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 5.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDELLQPQTTMANHHQTDLVAQVYRALTSVMPGFVARAQQKTMISRTLGLMTRQALGVIE CCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEE APTGIGKSMGYLIAGIASAVTEDKVLVVSTATASLQDQLASKDLPLALRAFALAGVCGID CCCCCCHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHCCCCCHHHHHHHHHHHHHHH VVVAKGRERHACPMKMHAFAGGTQDLFAAGDDHTALTQAVDLWRQGQWAGVRDDLPVRLH HEEECCCCCCCCCCHHHHHCCCCHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHH QRAWMRIANTAASCPGQKCPEFDLCPYYATQAALKTARVIITNHDYLLSTLSNVPHSVFS HHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHEEEEEECCHHHHHHHHHCCHHHHC DGHKCLFVFDEAHHLSDKLLNAFARRLDLAAFPSEVIEAIAQLCPGMVGLDFAAERVRGI CCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHH WRACEDAALTMLGDGSQHRFTLNEVPPQFRRLLLDLKAQLSGMRATLKEVKESNARFRNK HHHHHHHHEEEECCCCCCEEEHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AVAMLADSRIGQLSGDVQEAIDCIEEFTGDDLVARWLARGRNSIDLNCSPFDGARKARKH HHHHHHCCHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCCEEECCCCCHHHHHHHHH LWPVVKTGLLTSATLTTLGSFEPMRIALGLPAETSTLKLDSPFDYGRARLIVPRLCVEAS HHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCEEEECCCCCCCCCEEEHHHHHHCCC DPAHSRMVAAFLKDHALGAAKHRGVLVYFTSKKLMLDCMAAIPTAQRGCILLQGQWQPWA CCHHHHHHHHHHHHHHCCHHHHCCEEEEEECHHHHHHHHHHCCCCCCCEEEEECCCCCHH MLEEHKRRIDAGVRSIIFGLDSIGEGVDLPGEYCTRVIMTRLPFPCPDDPVLCTHAEYLR HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEECCHHHHH SKGKDPFHILTMPKVGLKFAQVAGRLMRREQDWGEFYVLDKRLRSKRYGAQIVKSTPFRT CCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHCCCCEE MEMG CCCC >Mature Secondary Structure MDELLQPQTTMANHHQTDLVAQVYRALTSVMPGFVARAQQKTMISRTLGLMTRQALGVIE CCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEE APTGIGKSMGYLIAGIASAVTEDKVLVVSTATASLQDQLASKDLPLALRAFALAGVCGID CCCCCCHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHCCCCCHHHHHHHHHHHHHHH VVVAKGRERHACPMKMHAFAGGTQDLFAAGDDHTALTQAVDLWRQGQWAGVRDDLPVRLH HEEECCCCCCCCCCHHHHHCCCCHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHH QRAWMRIANTAASCPGQKCPEFDLCPYYATQAALKTARVIITNHDYLLSTLSNVPHSVFS HHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHEEEEEECCHHHHHHHHHCCHHHHC DGHKCLFVFDEAHHLSDKLLNAFARRLDLAAFPSEVIEAIAQLCPGMVGLDFAAERVRGI CCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHH WRACEDAALTMLGDGSQHRFTLNEVPPQFRRLLLDLKAQLSGMRATLKEVKESNARFRNK HHHHHHHHEEEECCCCCCEEEHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AVAMLADSRIGQLSGDVQEAIDCIEEFTGDDLVARWLARGRNSIDLNCSPFDGARKARKH HHHHHHCCHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCCEEECCCCCHHHHHHHHH LWPVVKTGLLTSATLTTLGSFEPMRIALGLPAETSTLKLDSPFDYGRARLIVPRLCVEAS HHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCEEEECCCCCCCCCEEEHHHHHHCCC DPAHSRMVAAFLKDHALGAAKHRGVLVYFTSKKLMLDCMAAIPTAQRGCILLQGQWQPWA CCHHHHHHHHHHHHHHCCHHHHCCEEEEEECHHHHHHHHHHCCCCCCCEEEEECCCCCHH MLEEHKRRIDAGVRSIIFGLDSIGEGVDLPGEYCTRVIMTRLPFPCPDDPVLCTHAEYLR HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEECCHHHHH SKGKDPFHILTMPKVGLKFAQVAGRLMRREQDWGEFYVLDKRLRSKRYGAQIVKSTPFRT CCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHCCCCEE MEMG CCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]