Click here to switch to the map view.

The map label for this gene is czcR [H]

Identifier: 121610547

GI number: 121610547

Start: 4004415

End: 4005293

Strand: Direct

Name: czcR [H]

Synonym: Veis_3619

Alternate gene names: 121610547

Gene position: 4004415-4005293 (Clockwise)

Preceding gene: 121610539

Following gene: 121610549

Centisome position: 71.93

GC content: 66.55

Gene sequence:

>879_bases
ATGTTCATCCGCACACTGCGCGCTTTTCTGGCTTTGCATCGCGCGGGCACGGTGGTTGCGGCGGCCGAGGATGTCCACCT
CTCGCAAGCGGCGGTCAGCGTCCAGCTCAAGAATCTGGAGACCGAGCTCGGGCTGTCTCTTTTTGCGCGCACCAAGCGCT
CGCTCTGCCTGACACCGACGGGCCGGCAACTGGTGCCGTTGGCCGAGCAGATGGTCTCGATCTACGAGCAGATGAAACGG
CTCGACAAGGACGGCCCGGTGGCCGGGCTGCTCTCGCTGGGCGTGATCAACAGCGCCTGGACCGGTGTGCTGCCGCGCTT
GCTCAAGAAGATCACGGCCGGGCACCCGAACCTGGAGATCAAGGTCACGGCGGGCATCTCCGGCGATCTGGTCGCCAAGG
TCGATGCCGGCATCGTCGATGCCGCCATCGTGACGCAGCCGCCACGGCACTTTTCGACCCATCTCGTCGCCCACCACCTC
TATGCCGAGCCCTTTGTGCTGATCGCGCCGGCGCAGATGGAGTTCAGCGACCTGGCGACGAGCATGGGCGCCGCGCCCTA
TGTCGCGTTCGACCGCAGCGCATGGGCAGGACAGTTGATCGACGAGTACCTCGGCGCGCGCGGTTTGCGGGTGCGCCCGG
CGATGGAGGTCAACTCGCTCGACGCCATCATCGCCGTGGTGAGCCATGGGCTGGGCGTGTCGATCGTGCCATTGATCCTC
GGCGCGAACTGGCACACCAGCCCGGCGCTGCGCATCGTGCGCTTGTCCGGGTTCGACCGGCCGGTGTCGCTGATCGAGCG
CAGGCAGCATCTGCGCTCGGCACTCACGGCCACGGTGCTGGCCTCGTTCGAAGAAATCACCGCTGTGGCGGCGCCCTGA

Upstream 100 bases:

>100_bases
TCTTCAAAGTGGGGGGCCATGGTGTTGTCTCCGTTGTGTTGATTCATCGCGGCGATCTGCGCTATGGTGCGCTGTTCCGA
CCCCACCGTCCCGGCACTTC

Downstream 100 bases:

>100_bases
GGTGGCAGGCATTGGTTCAGCGCTGCCCGAAGGGCTGGCGCACATAGCCATCGCGCGTCTGCGGCAGTTTCTCGCCCAAA
ATCCTGCTCGCCACCTGCGT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 292; Mature: 292

Protein sequence:

>292_residues
MFIRTLRAFLALHRAGTVVAAAEDVHLSQAAVSVQLKNLETELGLSLFARTKRSLCLTPTGRQLVPLAEQMVSIYEQMKR
LDKDGPVAGLLSLGVINSAWTGVLPRLLKKITAGHPNLEIKVTAGISGDLVAKVDAGIVDAAIVTQPPRHFSTHLVAHHL
YAEPFVLIAPAQMEFSDLATSMGAAPYVAFDRSAWAGQLIDEYLGARGLRVRPAMEVNSLDAIIAVVSHGLGVSIVPLIL
GANWHTSPALRIVRLSGFDRPVSLIERRQHLRSALTATVLASFEEITAVAAP

Sequences:

>Translated_292_residues
MFIRTLRAFLALHRAGTVVAAAEDVHLSQAAVSVQLKNLETELGLSLFARTKRSLCLTPTGRQLVPLAEQMVSIYEQMKR
LDKDGPVAGLLSLGVINSAWTGVLPRLLKKITAGHPNLEIKVTAGISGDLVAKVDAGIVDAAIVTQPPRHFSTHLVAHHL
YAEPFVLIAPAQMEFSDLATSMGAAPYVAFDRSAWAGQLIDEYLGARGLRVRPAMEVNSLDAIIAVVSHGLGVSIVPLIL
GANWHTSPALRIVRLSGFDRPVSLIERRQHLRSALTATVLASFEEITAVAAP
>Mature_292_residues
MFIRTLRAFLALHRAGTVVAAAEDVHLSQAAVSVQLKNLETELGLSLFARTKRSLCLTPTGRQLVPLAEQMVSIYEQMKR
LDKDGPVAGLLSLGVINSAWTGVLPRLLKKITAGHPNLEIKVTAGISGDLVAKVDAGIVDAAIVTQPPRHFSTHLVAHHL
YAEPFVLIAPAQMEFSDLATSMGAAPYVAFDRSAWAGQLIDEYLGARGLRVRPAMEVNSLDAIIAVVSHGLGVSIVPLIL
GANWHTSPALRIVRLSGFDRPVSLIERRQHLRSALTATVLASFEEITAVAAP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787806, Length=237, Percent_Identity=24.8945147679325, Blast_Score=89, Evalue=5e-19,
Organism=Escherichia coli, GI1788481, Length=247, Percent_Identity=27.9352226720648, Blast_Score=81, Evalue=6e-17,
Organism=Escherichia coli, GI1790208, Length=252, Percent_Identity=28.968253968254, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI48994962, Length=163, Percent_Identity=27.6073619631902, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1788887, Length=254, Percent_Identity=25.1968503937008, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI1787879, Length=249, Percent_Identity=27.710843373494, Blast_Score=71, Evalue=9e-14,
Organism=Escherichia coli, GI2367136, Length=249, Percent_Identity=25.7028112449799, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1788626, Length=254, Percent_Identity=27.5590551181102, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1790399, Length=146, Percent_Identity=29.4520547945205, Blast_Score=65, Evalue=7e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 31333; Mature: 31333

Theoretical pI: Translated: 9.50; Mature: 9.50

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFIRTLRAFLALHRAGTVVAAAEDVHLSQAAVSVQLKNLETELGLSLFARTKRSLCLTPT
CHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCC
GRQLVPLAEQMVSIYEQMKRLDKDGPVAGLLSLGVINSAWTGVLPRLLKKITAGHPNLEI
CCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEE
KVTAGISGDLVAKVDAGIVDAAIVTQPPRHFSTHLVAHHLYAEPFVLIAPAQMEFSDLAT
EEEECCCCCEEEEECCCHHHHHHHCCCCHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHH
SMGAAPYVAFDRSAWAGQLIDEYLGARGLRVRPAMEVNSLDAIIAVVSHGLGVSIVPLIL
HHCCCCEEEECCCHHHHHHHHHHHCCCCCEECCCCCHHHHHHHHHHHHCCCCCEEHHHHC
GANWHTSPALRIVRLSGFDRPVSLIERRQHLRSALTATVLASFEEITAVAAP
CCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MFIRTLRAFLALHRAGTVVAAAEDVHLSQAAVSVQLKNLETELGLSLFARTKRSLCLTPT
CHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCC
GRQLVPLAEQMVSIYEQMKRLDKDGPVAGLLSLGVINSAWTGVLPRLLKKITAGHPNLEI
CCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEE
KVTAGISGDLVAKVDAGIVDAAIVTQPPRHFSTHLVAHHLYAEPFVLIAPAQMEFSDLAT
EEEECCCCCEEEEECCCHHHHHHHCCCCHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHH
SMGAAPYVAFDRSAWAGQLIDEYLGARGLRVRPAMEVNSLDAIIAVVSHGLGVSIVPLIL
HHCCCCEEEECCCHHHHHHHHHHHCCCCCEECCCCCHHHHHHHHHHHHCCCCCEEHHHHC
GANWHTSPALRIVRLSGFDRPVSLIERRQHLRSALTATVLASFEEITAVAAP
CCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9099864; 9308178; 9384377 [H]