| Definition | Verminephrobacter eiseniae EF01-2 chromosome, complete genome. |
|---|---|
| Accession | NC_008786 |
| Length | 5,566,749 |
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The map label for this gene is glnD [H]
Identifier: 121610539
GI number: 121610539
Start: 3993651
End: 3996332
Strand: Direct
Name: glnD [H]
Synonym: Veis_3611
Alternate gene names: 121610539
Gene position: 3993651-3996332 (Clockwise)
Preceding gene: 121610538
Following gene: 121610547
Centisome position: 71.74
GC content: 67.82
Gene sequence:
>2682_bases ATGGCCTCGGCCCGAGCGCAACGACACGACGCCGGTGCGGCACCCAGGCAACCCCGAGCCGACACACCGGAGCGCATGCG CACCACGACCATGACCGAACTGCCTGCCCTGCGCGCCGCCTATCGCCACGACAAAGCCACGCTGCTGGCCGCGCTGCAGG CCACCGGCGCATCCGCGCGCGGTATCCGCGTCTTGCTGCGCAAGCTGTCCACGCTGGCCGGCAAGCTGCTGCAAACGCTG TGGCAGCGCGCCCGCTTGCCCGACGACATGGCCTTGGTGGCGGTGGGCGGCTTCGGGCGCGAGCAACTTTTCCCCTACTC CGACGTCGATGTCCTGCTGCTGCTGCCCGAGGCCCTGGCGCCCGAGACCGGCAACGCATTGCGCGCGCAGATCGAGGGCT TCATCGGCAGTTGCTGGGACGCGGGGCTGGAGATCGGATCGAGCGTGCGCACGGTGGCCGAATGCCTGGCCGAGAGCGCC GGCGACGTCACCGTGCAGACCTCGCTGCTCGAAGCGCGCCTGCTGTGCGGCAGCGCGGCGCTGTTCGGCCAATTCCAGCG GCAGTACCGCGCGCAGCTCAACCCCGAAGCCTTCGTGCTGGCCAAGACGCTGGAGATGCGCCAGCGCCACACCAAGTACG AAAACACCCCCTACGCGCTGGAGCCCAATTGCAAGGAATCCCCGGGCGGGCTGCGCGACCTGCAAATGATCCTGTGGGTG GCGCAGGCCGCCGGCCTGGGCAGCGGCTGGAAGGAATTGGCCGCCAACGGCATGGCGACCGCGCTGGAACTGCGCCAGAT CGAACGCAATGAGGCGCTGCTGTGCCTGATCCGCGCGCGCCTGCACGCCGCCGCAGGCCGGCGCGAAGACCGTCTGGTGT TCGACCTGCAAACGGCAGTGGCCGAGTCGTTCGGCTACCGCTCGCAAGCCCCCGACGGCTCGCGCCTGCCGATGCGCGCC AGCGAAACCCTGATGCGCCGCTACTACTGGGCGGCCAAGGCGGTGTCGCAGTTGAGCCAGATCCTGCTGCTGAACATTGA AGAATCTCTGGCCCCGTCAACCCACGAACCGCGCGCCATCAACGCCCGCTTTTTCGAGAAGGCCGGCCTCATCGAAGTGG CCAGCGACGACCTGTACAGCCGCGACCCGCACGCCATCCTGGAGACCTTTTTGCTCTACCAGACCACGCTCGGGCTCAAG GACCTGTCGGCCCGCACGCTGCGCGCGCTCTACAACGCCCGCAGCGTGATGGACAGCGCCTTCCGGCGCGACCCGGTCAA CCGCGCGACCTTCATGCGCATCCTGCAACAGCCCTCGGGCATCACGCACGCGATGCGGCTGATGAACCAGACCTCGGTGC TCGGGCGCTACCTGTGGCCGTTTCGCCGCATCGTGGGGCAGATGCAGCACGACCTGTTCCATGTGTACACGGTAGACCAG CATATCCTGATGGTGCTGCGCAACATGCGCCGCTTCTTCATGGCCGAGCATGCGCACGAATACCCCTTTTGCTCGCAACT GGCCGGCGGCTGGGACCAGCCCTGGGTCCTGTACATCGCCGCCCTGTACCACGACATCGGCAAGGGCCGCGGCGGCGACC ATTCGCGCATCGGGGCGCAAGAAGTGCAGCGCTTTTGCCGCCAGCACGGCGTGGCCCGCGCGCAGGCCCGGCTGATCGAA TTCCTGGTGCGCGAGCACCTGACGATGAGCACCGTGGCACAAAAACAAGACCTGAGCGACCCGGACGTGATCGCCGCCTT TGCGCGCCAAGTCGGCAACGAGCGCAACCTCACGGCCATGTACCTGCTGACCGTGGCCGACATCCGCGGCACCAGCCCCA AGGTCTGGAACGCCTGGAAGGGCAAACTGCTGGAAGACCTGTACCGCGCCACACTGCGCGTCCTGGGCGGGCGGGCGCCC GACGCCGCCGCCGAGATCGAGGCCCGCAAGCGCCAGGCGCTGGTCCAACTGGCGCTCAGCGCCCTGCCGTTCGAGGCGCA CAAAGCATTGTGGGCAACGCTGGACGTGAGCTACTTCATGCGCCACGACGCCGCCGACATTGCCTGGCATACGCGCCACC TGTCGCGCCAGGTAGGCACGGCCAAGCCCGTGGTGCGCTCGCGCCAGTCGCTGGCCGGCGACGGGCTGCAAGTGATGGTC TACGCCGCCGACCAGACCGACCTGTTCGCGCGCATCTGCGGCTACTTCGACCGCGCGGGCTTCAGCATCCTCGACGCGCG GGTGCACACCGCCCACAACGGCTATGCGCTCGACACCTTCCAGGTCGTGGCCTCGTCGCAGCCGGGGCATTACCGCGAAC TCACGCACATGGTCGAAAGCGACCTCAGGCATGTGCTCGAAGAAGACGGCCCGCTGCCCGAGCCTGCCCGCAGGCGGGTA TCGCGCCGGGTCCAGAGCTTTCCGGTCGCGCCGCGCGTGAGCCTGCGGCCGGACGAAAAAGCGCAGCGCTGGCTGCTCGC GATATCGGCCAGCGACCGCGCCGGCCTGCTCTACTTGGTGGCGCGCATCCTGGCCAGACACCATCTGAGCGTGCAACTGG CCAAAATCAGCACGCTGGGCGAGCGCGTCGAAGACAGCTTCCTGATACAAGGCCCCGAGCTACAGAACAACGCCCGCCAA ATCCAGATCGAGACCGAGCTGCTGCGCGAATTGTCTGCATGA
Upstream 100 bases:
>100_bases CGTGCTGGTCACGCCCACCGGGTATGAGGTGTTGACCCTGTCGGCAGGCTCGCCGCCATTGCCGAACTTCGTCGCGGCCA CTGCGACCTGAGCGCAGTCT
Downstream 100 bases:
>100_bases GCGCTGCCCGGCCAGCCCTCAGCCATCCAGCGCCTCCACGCCATCGTCTTCGGCGGCCCGGGTGTCCGGAAACAGGACCT GCGTGAAGCCAAACTGCCTG
Product: PII uridylyl-transferase
Products: NA
Alternate protein names: PII uridylyl-transferase; UTase; Uridylyl-removing enzyme [H]
Number of amino acids: Translated: 893; Mature: 892
Protein sequence:
>893_residues MASARAQRHDAGAAPRQPRADTPERMRTTTMTELPALRAAYRHDKATLLAALQATGASARGIRVLLRKLSTLAGKLLQTL WQRARLPDDMALVAVGGFGREQLFPYSDVDVLLLLPEALAPETGNALRAQIEGFIGSCWDAGLEIGSSVRTVAECLAESA GDVTVQTSLLEARLLCGSAALFGQFQRQYRAQLNPEAFVLAKTLEMRQRHTKYENTPYALEPNCKESPGGLRDLQMILWV AQAAGLGSGWKELAANGMATALELRQIERNEALLCLIRARLHAAAGRREDRLVFDLQTAVAESFGYRSQAPDGSRLPMRA SETLMRRYYWAAKAVSQLSQILLLNIEESLAPSTHEPRAINARFFEKAGLIEVASDDLYSRDPHAILETFLLYQTTLGLK DLSARTLRALYNARSVMDSAFRRDPVNRATFMRILQQPSGITHAMRLMNQTSVLGRYLWPFRRIVGQMQHDLFHVYTVDQ HILMVLRNMRRFFMAEHAHEYPFCSQLAGGWDQPWVLYIAALYHDIGKGRGGDHSRIGAQEVQRFCRQHGVARAQARLIE FLVREHLTMSTVAQKQDLSDPDVIAAFARQVGNERNLTAMYLLTVADIRGTSPKVWNAWKGKLLEDLYRATLRVLGGRAP DAAAEIEARKRQALVQLALSALPFEAHKALWATLDVSYFMRHDAADIAWHTRHLSRQVGTAKPVVRSRQSLAGDGLQVMV YAADQTDLFARICGYFDRAGFSILDARVHTAHNGYALDTFQVVASSQPGHYRELTHMVESDLRHVLEEDGPLPEPARRRV SRRVQSFPVAPRVSLRPDEKAQRWLLAISASDRAGLLYLVARILARHHLSVQLAKISTLGERVEDSFLIQGPELQNNARQ IQIETELLRELSA
Sequences:
>Translated_893_residues MASARAQRHDAGAAPRQPRADTPERMRTTTMTELPALRAAYRHDKATLLAALQATGASARGIRVLLRKLSTLAGKLLQTL WQRARLPDDMALVAVGGFGREQLFPYSDVDVLLLLPEALAPETGNALRAQIEGFIGSCWDAGLEIGSSVRTVAECLAESA GDVTVQTSLLEARLLCGSAALFGQFQRQYRAQLNPEAFVLAKTLEMRQRHTKYENTPYALEPNCKESPGGLRDLQMILWV AQAAGLGSGWKELAANGMATALELRQIERNEALLCLIRARLHAAAGRREDRLVFDLQTAVAESFGYRSQAPDGSRLPMRA SETLMRRYYWAAKAVSQLSQILLLNIEESLAPSTHEPRAINARFFEKAGLIEVASDDLYSRDPHAILETFLLYQTTLGLK DLSARTLRALYNARSVMDSAFRRDPVNRATFMRILQQPSGITHAMRLMNQTSVLGRYLWPFRRIVGQMQHDLFHVYTVDQ HILMVLRNMRRFFMAEHAHEYPFCSQLAGGWDQPWVLYIAALYHDIGKGRGGDHSRIGAQEVQRFCRQHGVARAQARLIE FLVREHLTMSTVAQKQDLSDPDVIAAFARQVGNERNLTAMYLLTVADIRGTSPKVWNAWKGKLLEDLYRATLRVLGGRAP DAAAEIEARKRQALVQLALSALPFEAHKALWATLDVSYFMRHDAADIAWHTRHLSRQVGTAKPVVRSRQSLAGDGLQVMV YAADQTDLFARICGYFDRAGFSILDARVHTAHNGYALDTFQVVASSQPGHYRELTHMVESDLRHVLEEDGPLPEPARRRV SRRVQSFPVAPRVSLRPDEKAQRWLLAISASDRAGLLYLVARILARHHLSVQLAKISTLGERVEDSFLIQGPELQNNARQ IQIETELLRELSA >Mature_892_residues ASARAQRHDAGAAPRQPRADTPERMRTTTMTELPALRAAYRHDKATLLAALQATGASARGIRVLLRKLSTLAGKLLQTLW QRARLPDDMALVAVGGFGREQLFPYSDVDVLLLLPEALAPETGNALRAQIEGFIGSCWDAGLEIGSSVRTVAECLAESAG DVTVQTSLLEARLLCGSAALFGQFQRQYRAQLNPEAFVLAKTLEMRQRHTKYENTPYALEPNCKESPGGLRDLQMILWVA QAAGLGSGWKELAANGMATALELRQIERNEALLCLIRARLHAAAGRREDRLVFDLQTAVAESFGYRSQAPDGSRLPMRAS ETLMRRYYWAAKAVSQLSQILLLNIEESLAPSTHEPRAINARFFEKAGLIEVASDDLYSRDPHAILETFLLYQTTLGLKD LSARTLRALYNARSVMDSAFRRDPVNRATFMRILQQPSGITHAMRLMNQTSVLGRYLWPFRRIVGQMQHDLFHVYTVDQH ILMVLRNMRRFFMAEHAHEYPFCSQLAGGWDQPWVLYIAALYHDIGKGRGGDHSRIGAQEVQRFCRQHGVARAQARLIEF LVREHLTMSTVAQKQDLSDPDVIAAFARQVGNERNLTAMYLLTVADIRGTSPKVWNAWKGKLLEDLYRATLRVLGGRAPD AAAEIEARKRQALVQLALSALPFEAHKALWATLDVSYFMRHDAADIAWHTRHLSRQVGTAKPVVRSRQSLAGDGLQVMVY AADQTDLFARICGYFDRAGFSILDARVHTAHNGYALDTFQVVASSQPGHYRELTHMVESDLRHVLEEDGPLPEPARRRVS RRVQSFPVAPRVSLRPDEKAQRWLLAISASDRAGLLYLVARILARHHLSVQLAKISTLGERVEDSFLIQGPELQNNARQI QIETELLRELSA
Specific function: Modifies, by uridylylation or deuridylylation the PII (glnB) regulatory protein [H]
COG id: COG2844
COG function: function code O; UTP:GlnB (protein PII) uridylyltransferase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glnD family [H]
Homologues:
Organism=Escherichia coli, GI1786363, Length=845, Percent_Identity=35.8579881656805, Blast_Score=489, Evalue=1e-139,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002912 - InterPro: IPR010043 - InterPro: IPR003607 - InterPro: IPR002934 - InterPro: IPR013546 [H]
Pfam domain/function: PF01842 ACT; PF08335 GlnD_UR_UTase; PF01909 NTP_transf_2 [H]
EC number: =2.7.7.59 [H]
Molecular weight: Translated: 99969; Mature: 99838
Theoretical pI: Translated: 9.64; Mature: 9.64
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MASARAQRHDAGAAPRQPRADTPERMRTTTMTELPALRAAYRHDKATLLAALQATGASAR CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHH GIRVLLRKLSTLAGKLLQTLWQRARLPDDMALVAVGGFGREQLFPYSDVDVLLLLPEALA HHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCCCCCCCCEEEECCHHHC PETGNALRAQIEGFIGSCWDAGLEIGSSVRTVAECLAESAGDVTVQTSLLEARLLCGSAA CCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHH LFGQFQRQYRAQLNPEAFVLAKTLEMRQRHTKYENTPYALEPNCKESPGGLRDLQMILWV HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCHHHHHHHHHH AQAAGLGSGWKELAANGMATALELRQIERNEALLCLIRARLHAAAGRREDRLVFDLQTAV HHHCCCCCCHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCEEEHHHHHH AESFGYRSQAPDGSRLPMRASETLMRRYYWAAKAVSQLSQILLLNIEESLAPSTHEPRAI HHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCC NARFFEKAGLIEVASDDLYSRDPHAILETFLLYQTTLGLKDLSARTLRALYNARSVMDSA CHHHHHHCCCEEECCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH FRRDPVNRATFMRILQQPSGITHAMRLMNQTSVLGRYLWPFRRIVGQMQHDLFHVYTVDQ HHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEHHH HILMVLRNMRRFFMAEHAHEYPFCSQLAGGWDQPWVLYIAALYHDIGKGRGGDHSRIGAQ HHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHH EVQRFCRQHGVARAQARLIEFLVREHLTMSTVAQKQDLSDPDVIAAFARQVGNERNLTAM HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHH YLLTVADIRGTSPKVWNAWKGKLLEDLYRATLRVLGGRAPDAAAEIEARKRQALVQLALS HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH ALPFEAHKALWATLDVSYFMRHDAADIAWHTRHLSRQVGTAKPVVRSRQSLAGDGLQVMV HCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEE YAADQTDLFARICGYFDRAGFSILDARVHTAHNGYALDTFQVVASSQPGHYRELTHMVES EECCCHHHHHHHHHHHHHCCCHHHHHHHHCCCCCEEEHHHHHHHCCCCCHHHHHHHHHHH DLRHVLEEDGPLPEPARRRVSRRVQSFPVAPRVSLRPDEKAQRWLLAISASDRAGLLYLV HHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHEEEEEECCCCCHHHHHH ARILARHHLSVQLAKISTLGERVEDSFLIQGPELQNNARQIQIETELLRELSA HHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCEEEEHHHHHHHHCC >Mature Secondary Structure ASARAQRHDAGAAPRQPRADTPERMRTTTMTELPALRAAYRHDKATLLAALQATGASAR CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHH GIRVLLRKLSTLAGKLLQTLWQRARLPDDMALVAVGGFGREQLFPYSDVDVLLLLPEALA HHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCCCCCCCCEEEECCHHHC PETGNALRAQIEGFIGSCWDAGLEIGSSVRTVAECLAESAGDVTVQTSLLEARLLCGSAA CCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHH LFGQFQRQYRAQLNPEAFVLAKTLEMRQRHTKYENTPYALEPNCKESPGGLRDLQMILWV HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCHHHHHHHHHH AQAAGLGSGWKELAANGMATALELRQIERNEALLCLIRARLHAAAGRREDRLVFDLQTAV HHHCCCCCCHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCEEEHHHHHH AESFGYRSQAPDGSRLPMRASETLMRRYYWAAKAVSQLSQILLLNIEESLAPSTHEPRAI HHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCC NARFFEKAGLIEVASDDLYSRDPHAILETFLLYQTTLGLKDLSARTLRALYNARSVMDSA CHHHHHHCCCEEECCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH FRRDPVNRATFMRILQQPSGITHAMRLMNQTSVLGRYLWPFRRIVGQMQHDLFHVYTVDQ HHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEHHH HILMVLRNMRRFFMAEHAHEYPFCSQLAGGWDQPWVLYIAALYHDIGKGRGGDHSRIGAQ HHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHH EVQRFCRQHGVARAQARLIEFLVREHLTMSTVAQKQDLSDPDVIAAFARQVGNERNLTAM HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHH YLLTVADIRGTSPKVWNAWKGKLLEDLYRATLRVLGGRAPDAAAEIEARKRQALVQLALS HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH ALPFEAHKALWATLDVSYFMRHDAADIAWHTRHLSRQVGTAKPVVRSRQSLAGDGLQVMV HCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEE YAADQTDLFARICGYFDRAGFSILDARVHTAHNGYALDTFQVVASSQPGHYRELTHMVES EECCCHHHHHHHHHHHHHCCCHHHHHHHHCCCCCEEEHHHHHHHCCCCCHHHHHHHHHHH DLRHVLEEDGPLPEPARRRVSRRVQSFPVAPRVSLRPDEKAQRWLLAISASDRAGLLYLV HHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHEEEEEECCCCCHHHHHH ARILARHHLSVQLAKISTLGERVEDSFLIQGPELQNNARQIQIETELLRELSA HHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCEEEEHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA