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The map label for this gene is araQ [H]

Identifier: 121610387

GI number: 121610387

Start: 3828733

End: 3829566

Strand: Direct

Name: araQ [H]

Synonym: Veis_3455

Alternate gene names: 121610387

Gene position: 3828733-3829566 (Clockwise)

Preceding gene: 121610386

Following gene: 121610388

Centisome position: 68.78

GC content: 60.91

Gene sequence:

>834_bases
ATGAACATCGTCGGCAACAATCTGGCCGACCGCCTGGTGCTTGCGGCGGTCATTGCGCTGGCCATCGTGTGGGTGGCGCC
GCTCATGTGGGTGTTCGCGCTCTCGTTCAAGCCGAACGAGTTTCTCACGCAGCGCACCGATGTGATCTTCTCCGGCCCGT
TCACCCTCAAGAACTACATCGACATCATCGGCACCTCGGCGGTGTTCCGGTGGATCGTCAACAGCATCATCGTCGCGCTA
TCGCAAACCCTGGCCATGCTGGTGCTGGCCTCGCTGGCGGGCTACGGCTTCGCCCGCACCGAGTTCCCCGGCAAGAATGT
GCTGTTCGTTCTGGTGCTGGCCGGGCTGGCCGTGCCGGAGCAGGCCATCATCGTGCCCTTGCACCTGATGTTTGCCGACC
TCGAGATGCACAACACCTACACGGCGCTGATCCTGCCCCGGCTGGCAATGCCCTTTGGCGTGTACTTGATGACGCAGTAC
TTCAAGGCGATTCCGCGCGATATCGAGGAAGCAGCGCTGCTCGACAATGCCTCGCGCCTGAAGATTTTTTTCCGGGTGAT
CCTGCCGCTATCGATCCCCGCGCAGGCGACCCTGGGCATCTTCACCTTCCTGCATGCGTGGAACGATTATCTGTGGCCGC
TGATTTCGGCGTCCAAACCGGAGATGTACACGCTCACCCTGGGGCTGGCGTCCACCCAGTCCAACTTCGGCCAGTCCGAA
GGCATCGGCTACCTGATGTCGCAAGCGGTGTTCGCAGGGCTGCCGGTGTTCATCCTCTACCTGTTTTTCCAGAAATACAT
CATTGCGGCGGTGTCCGGCACGACCGTGAAGTGA

Upstream 100 bases:

>100_bases
CTGGGCAATGCCGCCGCTGCCTCGCAGGTGCTGCTGGGCATCATGCTGGTCGCCATGGCGCTCCAGATGTGGGTGTCCGG
CCGCAAGGAGGCGTTCTGAC

Downstream 100 bases:

>100_bases
TGACCCATCGATGACCCATCAATGACCGATAAGGAGACACGCATGAAGATGACATCGCACCTGGCCGCCATTGGCCTGCT
CGCCTGCGCTGCGGGCAGTG

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 277; Mature: 277

Protein sequence:

>277_residues
MNIVGNNLADRLVLAAVIALAIVWVAPLMWVFALSFKPNEFLTQRTDVIFSGPFTLKNYIDIIGTSAVFRWIVNSIIVAL
SQTLAMLVLASLAGYGFARTEFPGKNVLFVLVLAGLAVPEQAIIVPLHLMFADLEMHNTYTALILPRLAMPFGVYLMTQY
FKAIPRDIEEAALLDNASRLKIFFRVILPLSIPAQATLGIFTFLHAWNDYLWPLISASKPEMYTLTLGLASTQSNFGQSE
GIGYLMSQAVFAGLPVFILYLFFQKYIIAAVSGTTVK

Sequences:

>Translated_277_residues
MNIVGNNLADRLVLAAVIALAIVWVAPLMWVFALSFKPNEFLTQRTDVIFSGPFTLKNYIDIIGTSAVFRWIVNSIIVAL
SQTLAMLVLASLAGYGFARTEFPGKNVLFVLVLAGLAVPEQAIIVPLHLMFADLEMHNTYTALILPRLAMPFGVYLMTQY
FKAIPRDIEEAALLDNASRLKIFFRVILPLSIPAQATLGIFTFLHAWNDYLWPLISASKPEMYTLTLGLASTQSNFGQSE
GIGYLMSQAVFAGLPVFILYLFFQKYIIAAVSGTTVK
>Mature_277_residues
MNIVGNNLADRLVLAAVIALAIVWVAPLMWVFALSFKPNEFLTQRTDVIFSGPFTLKNYIDIIGTSAVFRWIVNSIIVAL
SQTLAMLVLASLAGYGFARTEFPGKNVLFVLVLAGLAVPEQAIIVPLHLMFADLEMHNTYTALILPRLAMPFGVYLMTQY
FKAIPRDIEEAALLDNASRLKIFFRVILPLSIPAQATLGIFTFLHAWNDYLWPLISASKPEMYTLTLGLASTQSNFGQSE
GIGYLMSQAVFAGLPVFILYLFFQKYIIAAVSGTTVK

Specific function: Part of the binding-protein-dependent transport system for L-arabinose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789860, Length=209, Percent_Identity=27.2727272727273, Blast_Score=101, Evalue=4e-23,
Organism=Escherichia coli, GI1787571, Length=234, Percent_Identity=30.3418803418803, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI1790464, Length=217, Percent_Identity=29.4930875576037, Blast_Score=81, Evalue=9e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 30623; Mature: 30623

Theoretical pI: Translated: 8.71; Mature: 8.71

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIVGNNLADRLVLAAVIALAIVWVAPLMWVFALSFKPNEFLTQRTDVIFSGPFTLKNYI
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCEEEECCCHHHHHH
DIIGTSAVFRWIVNSIIVALSQTLAMLVLASLAGYGFARTEFPGKNVLFVLVLAGLAVPE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCHHHHHHHHHHHCCCC
QAIIVPLHLMFADLEMHNTYTALILPRLAMPFGVYLMTQYFKAIPRDIEEAALLDNASRL
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCHHHH
KIFFRVILPLSIPAQATLGIFTFLHAWNDYLWPLISASKPEMYTLTLGLASTQSNFGQSE
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEHHHHHCCCCCC
GIGYLMSQAVFAGLPVFILYLFFQKYIIAAVSGTTVK
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MNIVGNNLADRLVLAAVIALAIVWVAPLMWVFALSFKPNEFLTQRTDVIFSGPFTLKNYI
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCEEEECCCHHHHHH
DIIGTSAVFRWIVNSIIVALSQTLAMLVLASLAGYGFARTEFPGKNVLFVLVLAGLAVPE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCHHHHHHHHHHHCCCC
QAIIVPLHLMFADLEMHNTYTALILPRLAMPFGVYLMTQYFKAIPRDIEEAALLDNASRL
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCHHHH
KIFFRVILPLSIPAQATLGIFTFLHAWNDYLWPLISASKPEMYTLTLGLASTQSNFGQSE
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEHHHHHCCCCCC
GIGYLMSQAVFAGLPVFILYLFFQKYIIAAVSGTTVK
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9084180; 8969504; 9384377; 10417639 [H]