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The map label for this gene is ycfD [H]

Identifier: 121609612

GI number: 121609612

Start: 3000684

End: 3001865

Strand: Direct

Name: ycfD [H]

Synonym: Veis_2658

Alternate gene names: 121609612

Gene position: 3000684-3001865 (Clockwise)

Preceding gene: 121609610

Following gene: 121609613

Centisome position: 53.9

GC content: 70.39

Gene sequence:

>1182_bases
ATGGACATCCGGCAACCCCTTGCGCTGCTCGGCGGCCTCAGCCCCGTGCAATTCATGCGCCGCCATTGGCAAAAAAAGCC
CCTGCTGGTGCGCCAGGCCATCCCCGGGTTCGCGCCGCCGGTGTCGCGTGCCGATGTGTTCGCGCTGGCGGCCCGGGAGG
GCGTGGAATCCCGGCTGGTGCAGTTGCGCCAAGGGGTCTGGAGCCTGCGCCATGGGCCGCTGCCGCGCCGCGCATTGCCG
GCGTTGCAGCAGCCCGGCTGGACCTTGCTGGTGCAGGGCGTGGACCTGCACGACGACGCGGTGCATGCGCTGATGCAGCA
GTTTCGCTTTGTGCCCGAGGCGCGGCTCGATGACCTGATGATCAGCTACGCCAGCAACGGCGGCGGCGTGGGGCCGCATT
TCGACAGCTACGACGTGTTCTTGCTGCAGGCCCATGGCCAGCGCCGCTGGCGCATAGGCCGGCAAAAGGATTTGACGCTG
CGCGCGGACATCCCGTTGAAAGTGCTGGCGCAGTTCGCGCCTGAACAGGAGTTCGTGCTCGATCCGGGGGACATGCTGTA
CCTGCCGCCGCGCTACGCCCACGACGGCATCGCCCAGGGGGAGTGCATGACCTGGTCGATCGGTTTTCGCGCGCCTGCAC
GCGCAGAACTGGCACGGGAGTTGTTGCTGCGCATCGCAGAGGATGCGGGCGATGAGGGCGATGCGGACGATGCGGGTGAT
CGGGGCCGTCCCCGGCGCTACCGCGACGCGGGCCAGCGGGCGACTGCGCAGCCGGCCGCGATGGCCCCCCGCCTGCAAGA
TTTCGCCCGCGCCGCATTGGCGCGCGCGCTGGCCCGGCCGTTGGCGCTGGAGCGCGCGCTGGGCGAGTATTTGACGGAGC
CCAAGCCCTGCGTATGGTTCGAGCCCGGTGCCGACGCCGGTGCCGACGGTGCGCCGTGCCATGGGCTGCGTCTGGATCGG
CGCAGCCGCATGTTGTACGACGCGCAGCATGTCTTCATCAACGGCGAGAGCTACCGCGCCGCAGGGCGCGACGCCAAGCT
GATGCGGCGCCTGGCCGATCGGCGCCAGCTCGGCGCGCGCGATCTGGAGCGCGCCAGCGCTGCCGCGCGGCAATGGCTTT
GCTCCTGGTGCGCTGCGGGCTGGGCCCATGGCCTGGCGGCTGACGACCCGGCGTTGCGTTGA

Upstream 100 bases:

>100_bases
AGTGCGACCACGCATCGTCGGGTGATTTCCATAGGACAATTGTCGCATCGACCCACCGGCCTTGGCGCTGTTTCACCACT
GCTTCACGCCCACCCCATCC

Downstream 100 bases:

>100_bases
TGGAAAGCCCGCGCCATGCAGCCCGATGCCCCGAACGCCGCCGCCGACCCGTGGTGGGCCATCTGCCTGTGCCCGGACTG
GTGCGGCGCCTGCCGCGACT

Product: cupin 4 family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 393; Mature: 393

Protein sequence:

>393_residues
MDIRQPLALLGGLSPVQFMRRHWQKKPLLVRQAIPGFAPPVSRADVFALAAREGVESRLVQLRQGVWSLRHGPLPRRALP
ALQQPGWTLLVQGVDLHDDAVHALMQQFRFVPEARLDDLMISYASNGGGVGPHFDSYDVFLLQAHGQRRWRIGRQKDLTL
RADIPLKVLAQFAPEQEFVLDPGDMLYLPPRYAHDGIAQGECMTWSIGFRAPARAELARELLLRIAEDAGDEGDADDAGD
RGRPRRYRDAGQRATAQPAAMAPRLQDFARAALARALARPLALERALGEYLTEPKPCVWFEPGADAGADGAPCHGLRLDR
RSRMLYDAQHVFINGESYRAAGRDAKLMRRLADRRQLGARDLERASAAARQWLCSWCAAGWAHGLAADDPALR

Sequences:

>Translated_393_residues
MDIRQPLALLGGLSPVQFMRRHWQKKPLLVRQAIPGFAPPVSRADVFALAAREGVESRLVQLRQGVWSLRHGPLPRRALP
ALQQPGWTLLVQGVDLHDDAVHALMQQFRFVPEARLDDLMISYASNGGGVGPHFDSYDVFLLQAHGQRRWRIGRQKDLTL
RADIPLKVLAQFAPEQEFVLDPGDMLYLPPRYAHDGIAQGECMTWSIGFRAPARAELARELLLRIAEDAGDEGDADDAGD
RGRPRRYRDAGQRATAQPAAMAPRLQDFARAALARALARPLALERALGEYLTEPKPCVWFEPGADAGADGAPCHGLRLDR
RSRMLYDAQHVFINGESYRAAGRDAKLMRRLADRRQLGARDLERASAAARQWLCSWCAAGWAHGLAADDPALR
>Mature_393_residues
MDIRQPLALLGGLSPVQFMRRHWQKKPLLVRQAIPGFAPPVSRADVFALAAREGVESRLVQLRQGVWSLRHGPLPRRALP
ALQQPGWTLLVQGVDLHDDAVHALMQQFRFVPEARLDDLMISYASNGGGVGPHFDSYDVFLLQAHGQRRWRIGRQKDLTL
RADIPLKVLAQFAPEQEFVLDPGDMLYLPPRYAHDGIAQGECMTWSIGFRAPARAELARELLLRIAEDAGDEGDADDAGD
RGRPRRYRDAGQRATAQPAAMAPRLQDFARAALARALARPLALERALGEYLTEPKPCVWFEPGADAGADGAPCHGLRLDR
RSRMLYDAQHVFINGESYRAAGRDAKLMRRLADRRQLGARDLERASAAARQWLCSWCAAGWAHGLAADDPALR

Specific function: Unknown

COG id: COG2850

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 JmjC domain [H]

Homologues:

Organism=Escherichia coli, GI87081836, Length=280, Percent_Identity=36.0714285714286, Blast_Score=178, Evalue=5e-46,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013109
- InterPro:   IPR022777
- InterPro:   IPR014710
- InterPro:   IPR003347 [H]

Pfam domain/function: PF08007 Cupin_4 [H]

EC number: NA

Molecular weight: Translated: 43695; Mature: 43695

Theoretical pI: Translated: 9.42; Mature: 9.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDIRQPLALLGGLSPVQFMRRHWQKKPLLVRQAIPGFAPPVSRADVFALAAREGVESRLV
CCCHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHH
QLRQGVWSLRHGPLPRRALPALQQPGWTLLVQGVDLHDDAVHALMQQFRFVPEARLDDLM
HHHHHHHHHHCCCCCHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCHHHHHHH
ISYASNGGGVGPHFDSYDVFLLQAHGQRRWRIGRQKDLTLRADIPLKVLAQFAPEQEFVL
HHHCCCCCCCCCCCCCCCEEEEEECCCHHHCCCCCCCCEEECCCCHHHHHHHCCCCCEEE
DPGDMLYLPPRYAHDGIAQGECMTWSIGFRAPARAELARELLLRIAEDAGDEGDADDAGD
CCCCEEEECCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCC
RGRPRRYRDAGQRATAQPAAMAPRLQDFARAALARALARPLALERALGEYLTEPKPCVWF
CCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE
EPGADAGADGAPCHGLRLDRRSRMLYDAQHVFINGESYRAAGRDAKLMRRLADRRQLGAR
CCCCCCCCCCCCCCCCCCCHHHHHHEECEEEEECCCCCCCCCCHHHHHHHHHHHHHHCHH
DLERASAAARQWLCSWCAAGWAHGLAADDPALR
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MDIRQPLALLGGLSPVQFMRRHWQKKPLLVRQAIPGFAPPVSRADVFALAAREGVESRLV
CCCHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHH
QLRQGVWSLRHGPLPRRALPALQQPGWTLLVQGVDLHDDAVHALMQQFRFVPEARLDDLM
HHHHHHHHHHCCCCCHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCHHHHHHH
ISYASNGGGVGPHFDSYDVFLLQAHGQRRWRIGRQKDLTLRADIPLKVLAQFAPEQEFVL
HHHCCCCCCCCCCCCCCCEEEEEECCCHHHCCCCCCCCEEECCCCHHHHHHHCCCCCEEE
DPGDMLYLPPRYAHDGIAQGECMTWSIGFRAPARAELARELLLRIAEDAGDEGDADDAGD
CCCCEEEECCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCC
RGRPRRYRDAGQRATAQPAAMAPRLQDFARAALARALARPLALERALGEYLTEPKPCVWF
CCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE
EPGADAGADGAPCHGLRLDRRSRMLYDAQHVFINGESYRAAGRDAKLMRRLADRRQLGAR
CCCCCCCCCCCCCCCCCCCHHHHHHEECEEEEECCCCCCCCCCHHHHHHHHHHHHHHCHH
DLERASAAARQWLCSWCAAGWAHGLAADDPALR
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 1729240 [H]