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The map label for this gene is yrdC [C]

Identifier: 121637230

GI number: 121637230

Start: 1484085

End: 1484738

Strand: Direct

Name: yrdC [C]

Synonym: BCG_1361

Alternate gene names: 121637230

Gene position: 1484085-1484738 (Clockwise)

Preceding gene: 121637229

Following gene: 121637231

Centisome position: 33.93

GC content: 66.82

Gene sequence:

>654_bases
TTGACTGAGACGTTCGACTGCGCCGACCCCGAGCAGCGTTCGCGTGGAATCGTCTCTGCGGTAGGGGCAATCAAGGCGGG
CCAACTGGTGGTGATGCCTACGGACACGGTGTATGGGATCGGCGCCGACGCCTTCGACAGCTCCGCGGTGGCCGCGTTGC
TGTCGGCAAAGGGGCGGGGTCGCGATATGCCGGTAGGTGTGCTGGTCGGCTCTTGGCACACGATCGAGGGGCTGGTCTAC
TCTATGCCCGACGGTGCCCGCGAACTGATTCGCGCATTCTGGCCCGGCGCGCTCAGCCTGGTGGTCGTGCAAGCGCCGTC
GCTGCAATGGGATCTTGGCGATGCCCATGGCACCGTGATGCTGCGAATGCCGCTGCACCCGGTCGCCATCGAGTTGTTGC
GTGAGGTGGGTCCGATGGCGGTATCCAGCGCCAACATCTCGGGCCACCCACCCCCGGTCGACGCCGAACAGGCACGCTCT
CAACTCGGCGACCACGTCGCGGTCTATCTCGACGCGGGGCCATCCGAACAGCAGGCCGGCTCCACGATCGTCGATCTGAC
CGGAGCCACCCCACGCGTCCTGCGGCAGGGGCCGGTCAGCACCGAGCGGATCGCCGAGGTACTTGGTGTGGACGCGGCCA
GCTTGTTCGGCTAG

Upstream 100 bases:

>100_bases
GGCGATGAGGTGGGGGCACCTCCCGCTTGCAGGGGAGAACGGCGCCATTGACCCGCGCCAGCGACGATGCAGAGCGAAGC
GATGAGGAGAAGCGGCGCCA

Downstream 100 bases:

>100_bases
CCGCCGAACGTGCACGCACTGCGAAGATTCGGCCAATTGTTCGCAGCTGTTGCACGTTCGGCGAGTGTTCAGCTCTCAGG
TTGGTGCAGTACGGTCTCGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 217; Mature: 216

Protein sequence:

>217_residues
MTETFDCADPEQRSRGIVSAVGAIKAGQLVVMPTDTVYGIGADAFDSSAVAALLSAKGRGRDMPVGVLVGSWHTIEGLVY
SMPDGARELIRAFWPGALSLVVVQAPSLQWDLGDAHGTVMLRMPLHPVAIELLREVGPMAVSSANISGHPPPVDAEQARS
QLGDHVAVYLDAGPSEQQAGSTIVDLTGATPRVLRQGPVSTERIAEVLGVDAASLFG

Sequences:

>Translated_217_residues
MTETFDCADPEQRSRGIVSAVGAIKAGQLVVMPTDTVYGIGADAFDSSAVAALLSAKGRGRDMPVGVLVGSWHTIEGLVY
SMPDGARELIRAFWPGALSLVVVQAPSLQWDLGDAHGTVMLRMPLHPVAIELLREVGPMAVSSANISGHPPPVDAEQARS
QLGDHVAVYLDAGPSEQQAGSTIVDLTGATPRVLRQGPVSTERIAEVLGVDAASLFG
>Mature_216_residues
TETFDCADPEQRSRGIVSAVGAIKAGQLVVMPTDTVYGIGADAFDSSAVAALLSAKGRGRDMPVGVLVGSWHTIEGLVYS
MPDGARELIRAFWPGALSLVVVQAPSLQWDLGDAHGTVMLRMPLHPVAIELLREVGPMAVSSANISGHPPPVDAEQARSQ
LGDHVAVYLDAGPSEQQAGSTIVDLTGATPRVLRQGPVSTERIAEVLGVDAASLFG

Specific function: Binds Preferentially To Double-Stranded RNA. [C]

COG id: COG0009

COG function: function code J; Putative translation factor (SUA5)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 YrdC-like domain [H]

Homologues:

Organism=Homo sapiens, GI58761510, Length=190, Percent_Identity=30, Blast_Score=67, Evalue=1e-11,
Organism=Escherichia coli, GI2367210, Length=152, Percent_Identity=27.6315789473684, Blast_Score=67, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI17537239, Length=197, Percent_Identity=29.9492385786802, Blast_Score=65, Evalue=3e-11,
Organism=Saccharomyces cerevisiae, GI6321269, Length=226, Percent_Identity=30.9734513274336, Blast_Score=83, Evalue=3e-17,
Organism=Drosophila melanogaster, GI78707274, Length=177, Percent_Identity=32.7683615819209, Blast_Score=69, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017945
- InterPro:   IPR004388
- InterPro:   IPR006070 [H]

Pfam domain/function: PF01300 Sua5_yciO_yrdC [H]

EC number: NA

Molecular weight: Translated: 22602; Mature: 22471

Theoretical pI: Translated: 4.57; Mature: 4.57

Prosite motif: PS51163 YRDC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTETFDCADPEQRSRGIVSAVGAIKAGQLVVMPTDTVYGIGADAFDSSAVAALLSAKGRG
CCCCCCCCCHHHHHCHHHHHHHHHCCCCEEEEECCCEEECCCCCCCHHHHHHHHHCCCCC
RDMPVGVLVGSWHTIEGLVYSMPDGARELIRAFWPGALSLVVVQAPSLQWDLGDAHGTVM
CCCCEEEEEECCEEECCEEEECCCHHHHHHHHHCCCCEEEEEEECCCCEEECCCCCCEEE
LRMPLHPVAIELLREVGPMAVSSANISGHPPPVDAEQARSQLGDHVAVYLDAGPSEQQAG
EEECCCHHHHHHHHHHCCCEEECCCCCCCCCCCCHHHHHHHCCCEEEEEEECCCCCHHCC
STIVDLTGATPRVLRQGPVSTERIAEVLGVDAASLFG
CEEEEECCCCHHHHHCCCCCHHHHHHHHCCCHHHHCC
>Mature Secondary Structure 
TETFDCADPEQRSRGIVSAVGAIKAGQLVVMPTDTVYGIGADAFDSSAVAALLSAKGRG
CCCCCCCCHHHHHCHHHHHHHHHCCCCEEEEECCCEEECCCCCCCHHHHHHHHHCCCCC
RDMPVGVLVGSWHTIEGLVYSMPDGARELIRAFWPGALSLVVVQAPSLQWDLGDAHGTVM
CCCCEEEEEECCEEECCEEEECCCHHHHHHHHHCCCCEEEEEEECCCCEEECCCCCCEEE
LRMPLHPVAIELLREVGPMAVSSANISGHPPPVDAEQARSQLGDHVAVYLDAGPSEQQAG
EEECCCHHHHHHHHHHCCCEEECCCCCCCCCCCCHHHHHHHCCCEEEEEEECCCCCHHCC
STIVDLTGATPRVLRQGPVSTERIAEVLGVDAASLFG
CEEEEECCCCHHHHHCCCCCHHHHHHHHCCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]