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The map label for this gene is ykfC [H]

Identifier: 121635982

GI number: 121635982

Start: 109182

End: 109934

Strand: Direct

Name: ykfC [H]

Synonym: BCG_0102

Alternate gene names: 121635982

Gene position: 109182-109934 (Clockwise)

Preceding gene: 121635979

Following gene: 121635983

Centisome position: 2.5

GC content: 65.34

Gene sequence:

>753_bases
ATGAGTTCGATCACGGTGTCGGTGGACCCGGTGGACCCGGTGGACCCGGTGGACCCGGTGGACCCGGTGGACCCGGTGGA
CCCGGTGGACCCGGTGGACCCGGTGGACCCGGTGGACGCCGTGGTCGCCGCGGGATCAGACGGGCTCACTGTGGCCCGCA
TCGAGTCCGAGATCGGGGCCTTGGAGTTCCTGAACGAACTGCGCACTGAACTCAAGAGTGGACAGTTTCGACCTCAACCG
GTGCGGGAACGCAAGATCCCCAAACCGGGCGGGTTGGGCAAGGTACGGCGGCTGGGGATTCCCACAGTGGCCGACCGGGT
CGTTCAGGCGGCGTTGAAACTGGTGCTAGAACCCATCTTTGAGACCGACTTCGAGCCGGTCTCCTACGGGTTTCGGCCCG
CGCGACGCGCGCACGACACGATCGCTGAGATTCACTTGTTCGGCACCCAGGAGTATCGCTGGGTGCTCGACGCTGATATC
AAGGCGTGCTTTGACCGCATCGACCACGCGGACCTGATGGACCGGGTGCGTCACCGGATCAAAGACAAGCGGGTGTTGCG
GCTGGTGAACTGGCAGCGCATTCGGCATCGCTGGAATTGGACCGACGTCCGCCGCTGGCTCACCGACCCCACCGGGCGGT
GGCACCCCATCAGCGCGGACGGGATCACCCTGTTTAACCCCGCCGCGGTGCCTATTCGGCGATACCGCTATCGGGGCAAC
ACGATCCCCACTCCCTGGACTCAGGCTGTCTGA

Upstream 100 bases:

>100_bases
CAGCGCGGGTCATATCACGCGTTCGTGCACAGTTGGGTGTTTATCCACAGGGGTGCGTTTGTCGGCGGCTGGCGGGGCGT
GGCGGCGATAGCATTCGAAT

Downstream 100 bases:

>100_bases
ACCACCCCATCGGCAGATTCCGTGAAGAGCCAGATACGGTGAAAGTCGCACGTCCGGTTCGAAGGGCGGCCACGGGAAAC
GGACCCGCAGCAACGCGGGC

Product: putative maturase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 250; Mature: 249

Protein sequence:

>250_residues
MSSITVSVDPVDPVDPVDPVDPVDPVDPVDPVDPVDPVDAVVAAGSDGLTVARIESEIGALEFLNELRTELKSGQFRPQP
VRERKIPKPGGLGKVRRLGIPTVADRVVQAALKLVLEPIFETDFEPVSYGFRPARRAHDTIAEIHLFGTQEYRWVLDADI
KACFDRIDHADLMDRVRHRIKDKRVLRLVNWQRIRHRWNWTDVRRWLTDPTGRWHPISADGITLFNPAAVPIRRYRYRGN
TIPTPWTQAV

Sequences:

>Translated_250_residues
MSSITVSVDPVDPVDPVDPVDPVDPVDPVDPVDPVDPVDAVVAAGSDGLTVARIESEIGALEFLNELRTELKSGQFRPQP
VRERKIPKPGGLGKVRRLGIPTVADRVVQAALKLVLEPIFETDFEPVSYGFRPARRAHDTIAEIHLFGTQEYRWVLDADI
KACFDRIDHADLMDRVRHRIKDKRVLRLVNWQRIRHRWNWTDVRRWLTDPTGRWHPISADGITLFNPAAVPIRRYRYRGN
TIPTPWTQAV
>Mature_249_residues
SSITVSVDPVDPVDPVDPVDPVDPVDPVDPVDPVDPVDAVVAAGSDGLTVARIESEIGALEFLNELRTELKSGQFRPQPV
RERKIPKPGGLGKVRRLGIPTVADRVVQAALKLVLEPIFETDFEPVSYGFRPARRAHDTIAEIHLFGTQEYRWVLDADIK
ACFDRIDHADLMDRVRHRIKDKRVLRLVNWQRIRHRWNWTDVRRWLTDPTGRWHPISADGITLFNPAAVPIRRYRYRGNT
IPTPWTQAV

Specific function: Unknown

COG id: COG3344

COG function: function code L; Retron-type reverse transcriptase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 reverse transcriptase domain [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6226520, Length=128, Percent_Identity=33.59375, Blast_Score=83, Evalue=4e-17,
Organism=Saccharomyces cerevisiae, GI6226521, Length=148, Percent_Identity=29.7297297297297, Blast_Score=77, Evalue=3e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015706
- InterPro:   IPR000477 [H]

Pfam domain/function: PF00078 RVT_1 [H]

EC number: NA

Molecular weight: Translated: 28449; Mature: 28318

Theoretical pI: Translated: 7.77; Mature: 7.77

Prosite motif: PS50878 RT_POL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSITVSVDPVDPVDPVDPVDPVDPVDPVDPVDPVDPVDAVVAAGSDGLTVARIESEIGA
CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEHHHHHHHH
LEFLNELRTELKSGQFRPQPVRERKIPKPGGLGKVRRLGIPTVADRVVQAALKLVLEPIF
HHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHH
ETDFEPVSYGFRPARRAHDTIAEIHLFGTQEYRWVLDADIKACFDRIDHADLMDRVRHRI
HCCCCHHHCCCCHHHHHHHHHHHHEEECCCCEEEEECHHHHHHHHHCCHHHHHHHHHHHH
KDKRVLRLVNWQRIRHRWNWTDVRRWLTDPTGRWHPISADGITLFNPAAVPIRRYRYRGN
HHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCEECCCCCCEEEECCCCCHHHHHHCCCC
TIPTPWTQAV
CCCCCCCCCC
>Mature Secondary Structure 
SSITVSVDPVDPVDPVDPVDPVDPVDPVDPVDPVDPVDAVVAAGSDGLTVARIESEIGA
CCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEHHHHHHHH
LEFLNELRTELKSGQFRPQPVRERKIPKPGGLGKVRRLGIPTVADRVVQAALKLVLEPIF
HHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHH
ETDFEPVSYGFRPARRAHDTIAEIHLFGTQEYRWVLDADIKACFDRIDHADLMDRVRHRI
HCCCCHHHCCCCHHHHHHHHHHHHEEECCCCEEEEECHHHHHHHHHCCHHHHHHHHHHHH
KDKRVLRLVNWQRIRHRWNWTDVRRWLTDPTGRWHPISADGITLFNPAAVPIRRYRYRGN
HHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCEECCCCCCEEEECCCCCHHHHHHCCCC
TIPTPWTQAV
CCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]