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The map label for this gene is fimD [H]

Identifier: 120613235

GI number: 120613235

Start: 5119812

End: 5122172

Strand: Direct

Name: fimD [H]

Synonym: Aave_4602

Alternate gene names: 120613235

Gene position: 5119812-5122172 (Clockwise)

Preceding gene: 120613234

Following gene: 120613236

Centisome position: 95.65

GC content: 73.78

Gene sequence:

>2361_bases
GTGCTGCTGGCCTGCCTGCCCCAATGGCTGTCCGCAGGCGACCTTCCACCGCCGCCGTCCGCCACGGGCGTGTCCACGGA
GGCCGCCGCCCTCTACCTGGAGGTGGAAGTGAACGGCCGGCCCGGGGAGGGTCTCGTCGCGGTCCGACAGCGCGGATCGC
ATTTCGAGATCGATGCGGCCACGCTGCGGCGCCTGCACGTGCAGACCGACGAGCCCGACGGCACGCCCGTGGCCGTGGAC
ACCCTGCCGGGCGTTTCCGTGGCCTACGACAGCCTCGCGCAGCGCCTGCGCATCGACGTGCCGGCGCAGTGGCTGCCGAT
GCAGCGGCTGGCCGGAGAGTCGCCGGAGGATGTGGCCCTCTCCCGGGGCACCGGGCTGCTGATGAACTACGAGTTCTACG
CCACGCGGACCCAGGGCCGCACGGCGGCCTCGCTGTGGTCGGAGCAGCGCTTTTTCGGCCTGCACGGAGTGGTTTCCCAC
ACGGGCGTGCTGCGCCGCGTGGACGGCGGCGCCAGCAACGGCTACCTGCGCTACGACACCGCCTGGACGGACACCGATGC
CGGCAGCGCCACGGCCTGGACGGCCGGGGACGTCATCACCGGCGCGCTGCCCTGGACCACGTCCGTGCGCCTGGGCGGGG
TGCAATGGGCGCGCAATTTCGCCGCGCGGCCCGACCTGGTGACGTATCCGATGCCCGAGTTCGCCGGGCAGGCGGCCGTA
CCGTCGGCCGTGGACGTCTTCGTCAACGGCTTCCGCGCCGGCCGGCACACCGTGCAGCCCGGACCTTTCACGCTGGGGGA
GCTGCCGGCCGTGAATGGCGCCGGCATGGCGTCCGTGGTCACCACCGATGCGCTGGGCCGTCAGGTGGTGACGTCCGTGC
CGTTCTACGTCAGCAGCCAGCTGCTGCGGCCGGGGTGGACCGATTACTCGCTCTCGATCGGTGCGCTGCGGCGCGGCTAC
GGCGTGCGCAGCTTCGCCTACGGCCGGCCGCTGGCCGCGGGCGTGCTGCGGCGGGGCGTGACCGATGCGATCACGGTCGA
GGCCCAGGCCCAGGCCGCCCGTGGCCTGGGCGTGCTGGGCGCGGGCGGGCTCATGCGCTGGGGCACCCTGGGCGTGTTCA
GCGCTTCGCTCACCTACGGCCGCGCGGTACCCGGCGACACCGCGCTGCCGGACCGCAGCGGCGGCTGGCAGTGGAGCGCG
GGCTACCAGTACAACACGCCGCGCGGCGGAATCTCGCTGCTGGAAACGCGGCGCCTGCACGGCTTCGGTGATGCCGCGGA
CTACGGCGGCAGCCTGCAGCCATCCCGCCTCAGCCGGCAGGTGAACGCGAGCCTGGTCGTCGGCTCCGCGTCGCTGGGCG
CAGGATGGATCGATCTGCGCGGCGCGGGCGCGGAGCGCAGCCGGCTCGCCTATGCCAGCTACAGCACGCCCCTCGGGCGC
GACGCCTTCTTTTCGCTGACGGCGGGCCGCACCGTCGAGACCGGAGAAACCCAGGTCCGCGCCCAGTTGACGTACCTGCT
CGATCCGCTGCTGACGGCGCAGGCCGCCGCGGCGCACACCGGCGGGCGGACGCAGGGGGAAGCGGGGCTGCAGCGCAGCC
TGCCGAGCAACGGCGGCTTCGGCTGGCGCATCGCCCAGACGCGCGGCGGCGGGCCCGCTGGCGGCGCGGGCGGCAACTAC
CGCCTCGCGAGCGCGCAATACCAGGGCCGGCATGGCATGGTGCAGGGCGGGCTCTTCGGCGCGGCCGCGGACACCACGCA
CTGGGCGGGTGCTTCGGGATCGCTGGGCGCCATGGACGGCTATGTGTTCGCCGCCAACCGCGTCACGGACGGCTTCGCGC
TCGTATCGACGGACGGTGCGCCCGGCGTGCCGATCACGTTCAACCACCAATCCGTGGGACGCACCGACAGCCAGGGCTAT
CTGCTGGTTCCCAACGTGCCCGCCTACTATCCCGCGCGCTACGCGATCGACCCGCTGTCCCTCCCGCCGGACGTGCACAC
GCCCGCTCTGGAACGGCGCATAGCCGTGGCGCGGGGCACGGGCACGCTGGTGCGCATGCCGGTGCTGCGCATGCGCACGG
CCACCCTGACGCTGGTGGACGCGGCCGGCGAGCCGCTGCCTCCGGGCAGCGCCGTCGTGCACGAGCAGGGCCAGGTACCC
ACGGTGGTGGGGTGGGACGGCGTGGTCTACCTGACGGCGCTGCACACGCGCAACACGCTCGCGGCCCGCATGCCCGACGG
GCGGGAATGCCGGGCCGCCTTCGATGCGGCGGAGCACGCGGCGCAGCGCGACCTGCGCGTGGTCTGCCGCGAGGGCGGGG
CGCCGCGTTATTCCGTCAGCTCCGGGGGGGAGGCGCTGTGA

Upstream 100 bases:

>100_bases
CTGCTTGCCACCGTCAACGGGCGCGAGGCGCCCCTGCCCCGTGCCGAGCCATGACACCGCGGGCCACCGCCCTGCCCCCG
CGCGTGCCCACGGGCTGGCG

Downstream 100 bases:

>100_bases
CCCGCGCAGCACGTCCGGCACGGAGGGCGCCGGGGGCCGCCCTGCCGCTGGCGGCAGCGGGGCTGCTGGCGGCCCTCTGC
CGCACGGCATCGGCCGATTG

Product: fimbrial biogenesis outer membrane usher protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 786; Mature: 786

Protein sequence:

>786_residues
MLLACLPQWLSAGDLPPPPSATGVSTEAAALYLEVEVNGRPGEGLVAVRQRGSHFEIDAATLRRLHVQTDEPDGTPVAVD
TLPGVSVAYDSLAQRLRIDVPAQWLPMQRLAGESPEDVALSRGTGLLMNYEFYATRTQGRTAASLWSEQRFFGLHGVVSH
TGVLRRVDGGASNGYLRYDTAWTDTDAGSATAWTAGDVITGALPWTTSVRLGGVQWARNFAARPDLVTYPMPEFAGQAAV
PSAVDVFVNGFRAGRHTVQPGPFTLGELPAVNGAGMASVVTTDALGRQVVTSVPFYVSSQLLRPGWTDYSLSIGALRRGY
GVRSFAYGRPLAAGVLRRGVTDAITVEAQAQAARGLGVLGAGGLMRWGTLGVFSASLTYGRAVPGDTALPDRSGGWQWSA
GYQYNTPRGGISLLETRRLHGFGDAADYGGSLQPSRLSRQVNASLVVGSASLGAGWIDLRGAGAERSRLAYASYSTPLGR
DAFFSLTAGRTVETGETQVRAQLTYLLDPLLTAQAAAAHTGGRTQGEAGLQRSLPSNGGFGWRIAQTRGGGPAGGAGGNY
RLASAQYQGRHGMVQGGLFGAAADTTHWAGASGSLGAMDGYVFAANRVTDGFALVSTDGAPGVPITFNHQSVGRTDSQGY
LLVPNVPAYYPARYAIDPLSLPPDVHTPALERRIAVARGTGTLVRMPVLRMRTATLTLVDAAGEPLPPGSAVVHEQGQVP
TVVGWDGVVYLTALHTRNTLAARMPDGRECRAAFDAAEHAAQRDLRVVCREGGAPRYSVSSGGEAL

Sequences:

>Translated_786_residues
MLLACLPQWLSAGDLPPPPSATGVSTEAAALYLEVEVNGRPGEGLVAVRQRGSHFEIDAATLRRLHVQTDEPDGTPVAVD
TLPGVSVAYDSLAQRLRIDVPAQWLPMQRLAGESPEDVALSRGTGLLMNYEFYATRTQGRTAASLWSEQRFFGLHGVVSH
TGVLRRVDGGASNGYLRYDTAWTDTDAGSATAWTAGDVITGALPWTTSVRLGGVQWARNFAARPDLVTYPMPEFAGQAAV
PSAVDVFVNGFRAGRHTVQPGPFTLGELPAVNGAGMASVVTTDALGRQVVTSVPFYVSSQLLRPGWTDYSLSIGALRRGY
GVRSFAYGRPLAAGVLRRGVTDAITVEAQAQAARGLGVLGAGGLMRWGTLGVFSASLTYGRAVPGDTALPDRSGGWQWSA
GYQYNTPRGGISLLETRRLHGFGDAADYGGSLQPSRLSRQVNASLVVGSASLGAGWIDLRGAGAERSRLAYASYSTPLGR
DAFFSLTAGRTVETGETQVRAQLTYLLDPLLTAQAAAAHTGGRTQGEAGLQRSLPSNGGFGWRIAQTRGGGPAGGAGGNY
RLASAQYQGRHGMVQGGLFGAAADTTHWAGASGSLGAMDGYVFAANRVTDGFALVSTDGAPGVPITFNHQSVGRTDSQGY
LLVPNVPAYYPARYAIDPLSLPPDVHTPALERRIAVARGTGTLVRMPVLRMRTATLTLVDAAGEPLPPGSAVVHEQGQVP
TVVGWDGVVYLTALHTRNTLAARMPDGRECRAAFDAAEHAAQRDLRVVCREGGAPRYSVSSGGEAL
>Mature_786_residues
MLLACLPQWLSAGDLPPPPSATGVSTEAAALYLEVEVNGRPGEGLVAVRQRGSHFEIDAATLRRLHVQTDEPDGTPVAVD
TLPGVSVAYDSLAQRLRIDVPAQWLPMQRLAGESPEDVALSRGTGLLMNYEFYATRTQGRTAASLWSEQRFFGLHGVVSH
TGVLRRVDGGASNGYLRYDTAWTDTDAGSATAWTAGDVITGALPWTTSVRLGGVQWARNFAARPDLVTYPMPEFAGQAAV
PSAVDVFVNGFRAGRHTVQPGPFTLGELPAVNGAGMASVVTTDALGRQVVTSVPFYVSSQLLRPGWTDYSLSIGALRRGY
GVRSFAYGRPLAAGVLRRGVTDAITVEAQAQAARGLGVLGAGGLMRWGTLGVFSASLTYGRAVPGDTALPDRSGGWQWSA
GYQYNTPRGGISLLETRRLHGFGDAADYGGSLQPSRLSRQVNASLVVGSASLGAGWIDLRGAGAERSRLAYASYSTPLGR
DAFFSLTAGRTVETGETQVRAQLTYLLDPLLTAQAAAAHTGGRTQGEAGLQRSLPSNGGFGWRIAQTRGGGPAGGAGGNY
RLASAQYQGRHGMVQGGLFGAAADTTHWAGASGSLGAMDGYVFAANRVTDGFALVSTDGAPGVPITFNHQSVGRTDSQGY
LLVPNVPAYYPARYAIDPLSLPPDVHTPALERRIAVARGTGTLVRMPVLRMRTATLTLVDAAGEPLPPGSAVVHEQGQVP
TVVGWDGVVYLTALHTRNTLAARMPDGRECRAAFDAAEHAAQRDLRVVCREGGAPRYSVSSGGEAL

Specific function: Involved in the export and assembly of fimA fimbrial subunits across the outer membrane [H]

COG id: COG3188

COG function: function code NU; P pilus assembly protein, porin PapC

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fimbrial export usher family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000015
- InterPro:   IPR018030 [H]

Pfam domain/function: PF00577 Usher [H]

EC number: NA

Molecular weight: Translated: 82482; Mature: 82482

Theoretical pI: Translated: 8.83; Mature: 8.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLACLPQWLSAGDLPPPPSATGVSTEAAALYLEVEVNGRPGEGLVAVRQRGSHFEIDAA
CCCEECHHHHHCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCEEEEECCCCEEEEEHH
TLRRLHVQTDEPDGTPVAVDTLPGVSVAYDSLAQRLRIDVPAQWLPMQRLAGESPEDVAL
HHEEEEEECCCCCCCEEEEECCCCCHHHHHHHHHHEECCCCHHHCCHHHHCCCCCHHEEE
SRGTGLLMNYEFYATRTQGRTAASLWSEQRFFGLHGVVSHTGVLRRVDGGASNGYLRYDT
ECCCEEEEEEEEEEEECCCCHHHHHHHHHHHEEHHHHHHHCCEEEECCCCCCCCEEEECC
AWTDTDAGSATAWTAGDVITGALPWTTSVRLGGVQWARNFAARPDLVTYPMPEFAGQAAV
CCCCCCCCCCEEEECCCEEECCCCCCCCEEECCHHHHHHHCCCCCEEECCCHHHCCCCCC
PSAVDVFVNGFRAGRHTVQPGPFTLGELPAVNGAGMASVVTTDALGRQVVTSVPFYVSSQ
CHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHH
LLRPGWTDYSLSIGALRRGYGVRSFAYGRPLAAGVLRRGVTDAITVEAQAQAARGLGVLG
HHCCCCCCCEEEHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCEEEEEEHHHHHCCCEEEC
AGGLMRWGTLGVFSASLTYGRAVPGDTALPDRSGGWQWSAGYQYNTPRGGISLLETRRLH
CCCHHHHCHHHEEEECCCCCCCCCCCCCCCCCCCCEEEECCEECCCCCCCHHHHHHHHHC
GFGDAADYGGSLQPSRLSRQVNASLVVGSASLGAGWIDLRGAGAERSRLAYASYSTPLGR
CCCCHHCCCCCCCHHHHHHHCCCEEEEECCCCCCCEEEEECCCCCCCEEEEEECCCCCCC
DAFFSLTAGRTVETGETQVRAQLTYLLDPLLTAQAAAAHTGGRTQGEAGLQRSLPSNGGF
CEEEEEECCCEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCCCC
GWRIAQTRGGGPAGGAGGNYRLASAQYQGRHGMVQGGLFGAAADTTHWAGASGSLGAMDG
EEEEEECCCCCCCCCCCCCEEEECCEECCCCCEEECCEEECCCCCCCCCCCCCCCCCCCC
YVFAANRVTDGFALVSTDGAPGVPITFNHQSVGRTDSQGYLLVPNVPAYYPARYAIDPLS
EEEEECCCCCCEEEEECCCCCCCCEEECCCCCCCCCCCCEEEECCCCCCCCCCEEECCCC
LPPDVHTPALERRIAVARGTGTLVRMPVLRMRTATLTLVDAAGEPLPPGSAVVHEQGQVP
CCCCCCCHHHHHEEEEECCCCCEEECCHHHEEEEEEEEEECCCCCCCCCCCEEECCCCCC
TVVGWDGVVYLTALHTRNTLAARMPDGRECRAAFDAAEHAAQRDLRVVCREGGAPRYSVS
EEECCCCEEEEEEEECCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEC
SGGEAL
CCCCCC
>Mature Secondary Structure
MLLACLPQWLSAGDLPPPPSATGVSTEAAALYLEVEVNGRPGEGLVAVRQRGSHFEIDAA
CCCEECHHHHHCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCEEEEECCCCEEEEEHH
TLRRLHVQTDEPDGTPVAVDTLPGVSVAYDSLAQRLRIDVPAQWLPMQRLAGESPEDVAL
HHEEEEEECCCCCCCEEEEECCCCCHHHHHHHHHHEECCCCHHHCCHHHHCCCCCHHEEE
SRGTGLLMNYEFYATRTQGRTAASLWSEQRFFGLHGVVSHTGVLRRVDGGASNGYLRYDT
ECCCEEEEEEEEEEEECCCCHHHHHHHHHHHEEHHHHHHHCCEEEECCCCCCCCEEEECC
AWTDTDAGSATAWTAGDVITGALPWTTSVRLGGVQWARNFAARPDLVTYPMPEFAGQAAV
CCCCCCCCCCEEEECCCEEECCCCCCCCEEECCHHHHHHHCCCCCEEECCCHHHCCCCCC
PSAVDVFVNGFRAGRHTVQPGPFTLGELPAVNGAGMASVVTTDALGRQVVTSVPFYVSSQ
CHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHH
LLRPGWTDYSLSIGALRRGYGVRSFAYGRPLAAGVLRRGVTDAITVEAQAQAARGLGVLG
HHCCCCCCCEEEHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCEEEEEEHHHHHCCCEEEC
AGGLMRWGTLGVFSASLTYGRAVPGDTALPDRSGGWQWSAGYQYNTPRGGISLLETRRLH
CCCHHHHCHHHEEEECCCCCCCCCCCCCCCCCCCCEEEECCEECCCCCCCHHHHHHHHHC
GFGDAADYGGSLQPSRLSRQVNASLVVGSASLGAGWIDLRGAGAERSRLAYASYSTPLGR
CCCCHHCCCCCCCHHHHHHHCCCEEEEECCCCCCCEEEEECCCCCCCEEEEEECCCCCCC
DAFFSLTAGRTVETGETQVRAQLTYLLDPLLTAQAAAAHTGGRTQGEAGLQRSLPSNGGF
CEEEEEECCCEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCCCC
GWRIAQTRGGGPAGGAGGNYRLASAQYQGRHGMVQGGLFGAAADTTHWAGASGSLGAMDG
EEEEEECCCCCCCCCCCCCEEEECCEECCCCCEEECCEEECCCCCCCCCCCCCCCCCCCC
YVFAANRVTDGFALVSTDGAPGVPITFNHQSVGRTDSQGYLLVPNVPAYYPARYAIDPLS
EEEEECCCCCCEEEEECCCCCCCCEEECCCCCCCCCCCCEEEECCCCCCCCCCEEECCCC
LPPDVHTPALERRIAVARGTGTLVRMPVLRMRTATLTLVDAAGEPLPPGSAVVHEQGQVP
CCCCCCCHHHHHEEEEECCCCCEEECCHHHEEEEEEEEEECCCCCCCCCCCEEECCCCCC
TVVGWDGVVYLTALHTRNTLAARMPDGRECRAAFDAAEHAAQRDLRVVCREGGAPRYSVS
EEECCCCEEEEEEEECCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEC
SGGEAL
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11677609 [H]