| Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008752 |
| Length | 5,352,772 |
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The map label for this gene is 120613236
Identifier: 120613236
GI number: 120613236
Start: 5122169
End: 5123143
Strand: Direct
Name: 120613236
Synonym: Aave_4603
Alternate gene names: NA
Gene position: 5122169-5123143 (Clockwise)
Preceding gene: 120613235
Following gene: 120613248
Centisome position: 95.69
GC content: 71.59
Gene sequence:
>975_bases GTGACCCGCGCAGCACGTCCGGCACGGAGGGCGCCGGGGGCCGCCCTGCCGCTGGCGGCAGCGGGGCTGCTGGCGGCCCT CTGCCGCACGGCATCGGCCGATTGCGTGAACAGCGAAACCGGCGGCAATCTCGGCACGGTGCCCTCGCAGCGGGTGCTCT CCGGCCCCGCCGTCACCACCACGGCGCAGTTCACGCTGGGGTGCGGGGGCATCGTGCTGTCCACGCTGGGCACGTCGACG GTGCAGGCGAAATTCTTGAGCCCCACGACCGGGCTCACGCTCAAGGACGGAACGAAGCCGGCCATTCCCTACCAGATCAC CAACCTCGCGGGCGCCAGCTACACGCAGGGCGCGCTGGTGATCAATGCCAGCGGCGCGAACGTGATCGCGCTGCTGAGCA ACAACACCGCGTCGCTGCCGCTGCGCGTCACCACCGCGGTCGGCGCGAACGTGCCCGCGGGCACCTACACGGACACCATC ACCGTGAACTGGGCCTACGCCAACATCTGCGAAGGCCTGCTCGGCGTGGGTGGCATCTGCGTGGGCACGCCGCGCAATGG CAACGTGAACCGACTGCTGACCGTGCGGCTGGTGGTCACGAACGACTGCACCCTGTCCGCGCCGAACCTGCAGTTCGGCT CCGCGCCCCTGCCGGCGGCTTTCCCGGCGGTGTCCGGCAACATCTCGGTGGTCTGCACGCGCGGATTGTCCGTGACCGTG GGGCTCGGCCCGGGCGCCTATCCCTCGGGCGGCCGCAGGCAGATGGCCAGCGGCGCGAACCGGCTGGCCTACGACCTGTT CCGGGCCGACGGCAGCCTCTGGGGCACGGCCGCGGGCACGCGCACGGCCGGAACGGCCGTCACGGACGGCACCGCGCCCA TCGTTCTGCCCTACACGGCGCGCATCTACGGCGACCAGACACCGCCGCCGCCCGGGGTGTACCAGGACAACGTGGTGGTG GACGTGCAGTACTGA
Upstream 100 bases:
>100_bases CCTTCGATGCGGCGGAGCACGCGGCGCAGCGCGACCTGCGCGTGGTCTGCCGCGAGGGCGGGGCGCCGCGTTATTCCGTC AGCTCCGGGGGGGAGGCGCT
Downstream 100 bases:
>100_bases ACGGGCTCAGTGGTGGTGGCCGTGCCCGCCGTGCACATGGCGGTGGGCGACCTCATCGGCCGTGGCCGGCCGCACTTCGG TCACCTTGCAGGAAAAGCGC
Product: spore coat U domain-containing protein
Products: NA
Alternate protein names: Spore Coat U Domain Protein; Type I Pili Chaperone-Usher Pili Assembly System); Spore Coat Protein U Domain-Contain Protein; Type 1 Pili Protein CsuE; Type I Pilus Protein CsuE; Spore Coat U; CsuE Protein; Sigma-Fimbriae Tip Adhesin; Fimbrial Adhesin; Fimbrial Protein; Lipoprotein
Number of amino acids: Translated: 324; Mature: 323
Protein sequence:
>324_residues MTRAARPARRAPGAALPLAAAGLLAALCRTASADCVNSETGGNLGTVPSQRVLSGPAVTTTAQFTLGCGGIVLSTLGTST VQAKFLSPTTGLTLKDGTKPAIPYQITNLAGASYTQGALVINASGANVIALLSNNTASLPLRVTTAVGANVPAGTYTDTI TVNWAYANICEGLLGVGGICVGTPRNGNVNRLLTVRLVVTNDCTLSAPNLQFGSAPLPAAFPAVSGNISVVCTRGLSVTV GLGPGAYPSGGRRQMASGANRLAYDLFRADGSLWGTAAGTRTAGTAVTDGTAPIVLPYTARIYGDQTPPPPGVYQDNVVV DVQY
Sequences:
>Translated_324_residues MTRAARPARRAPGAALPLAAAGLLAALCRTASADCVNSETGGNLGTVPSQRVLSGPAVTTTAQFTLGCGGIVLSTLGTST VQAKFLSPTTGLTLKDGTKPAIPYQITNLAGASYTQGALVINASGANVIALLSNNTASLPLRVTTAVGANVPAGTYTDTI TVNWAYANICEGLLGVGGICVGTPRNGNVNRLLTVRLVVTNDCTLSAPNLQFGSAPLPAAFPAVSGNISVVCTRGLSVTV GLGPGAYPSGGRRQMASGANRLAYDLFRADGSLWGTAAGTRTAGTAVTDGTAPIVLPYTARIYGDQTPPPPGVYQDNVVV DVQY >Mature_323_residues TRAARPARRAPGAALPLAAAGLLAALCRTASADCVNSETGGNLGTVPSQRVLSGPAVTTTAQFTLGCGGIVLSTLGTSTV QAKFLSPTTGLTLKDGTKPAIPYQITNLAGASYTQGALVINASGANVIALLSNNTASLPLRVTTAVGANVPAGTYTDTIT VNWAYANICEGLLGVGGICVGTPRNGNVNRLLTVRLVVTNDCTLSAPNLQFGSAPLPAAFPAVSGNISVVCTRGLSVTVG LGPGAYPSGGRRQMASGANRLAYDLFRADGSLWGTAAGTRTAGTAVTDGTAPIVLPYTARIYGDQTPPPPGVYQDNVVVD VQY
Specific function: Unknown
COG id: COG5430
COG function: function code S; Uncharacterized secreted protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 32633; Mature: 32502
Theoretical pI: Translated: 9.23; Mature: 9.23
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.2 %Cys (Translated Protein) 0.6 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 2.2 %Cys (Mature Protein) 0.3 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTRAARPARRAPGAALPLAAAGLLAALCRTASADCVNSETGGNLGTVPSQRVLSGPAVTT CCCCCCCHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHCCCCEEE TAQFTLGCGGIVLSTLGTSTVQAKFLSPTTGLTLKDGTKPAIPYQITNLAGASYTQGALV EEEEEECCCHHHHHHCCCCCEEEEEECCCCCEEEECCCCCCCCEEEECCCCCCCCCCEEE INASGANVIALLSNNTASLPLRVTTAVGANVPAGTYTDTITVNWAYANICEGLLGVGGIC EEECCCCEEEEEECCCCCCEEEEEEECCCCCCCCCCCCEEEEEEHHHHHHHHHHCCCEEE VGTPRNGNVNRLLTVRLVVTNDCTLSAPNLQFGSAPLPAAFPAVSGNISVVCTRGLSVTV EECCCCCCCCEEEEEEEEEECCCEEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEE GLGPGAYPSGGRRQMASGANRLAYDLFRADGSLWGTAAGTRTAGTAVTDGTAPIVLPYTA ECCCCCCCCCCCHHHHCCCHHHHHHHHHCCCCEEECCCCCCCCCCEEECCCCCEEEEEEE RIYGDQTPPPPGVYQDNVVVDVQY EEECCCCCCCCCCCCCCEEEEEEC >Mature Secondary Structure TRAARPARRAPGAALPLAAAGLLAALCRTASADCVNSETGGNLGTVPSQRVLSGPAVTT CCCCCCHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHCCCCEEE TAQFTLGCGGIVLSTLGTSTVQAKFLSPTTGLTLKDGTKPAIPYQITNLAGASYTQGALV EEEEEECCCHHHHHHCCCCCEEEEEECCCCCEEEECCCCCCCCEEEECCCCCCCCCCEEE INASGANVIALLSNNTASLPLRVTTAVGANVPAGTYTDTITVNWAYANICEGLLGVGGIC EEECCCCEEEEEECCCCCCEEEEEEECCCCCCCCCCCCEEEEEEHHHHHHHHHHCCCEEE VGTPRNGNVNRLLTVRLVVTNDCTLSAPNLQFGSAPLPAAFPAVSGNISVVCTRGLSVTV EECCCCCCCCEEEEEEEEEECCCEEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEE GLGPGAYPSGGRRQMASGANRLAYDLFRADGSLWGTAAGTRTAGTAVTDGTAPIVLPYTA ECCCCCCCCCCCHHHHCCCHHHHHHHHHCCCCEEECCCCCCCCCCEEECCCCCEEEEEEE RIYGDQTPPPPGVYQDNVVVDVQY EEECCCCCCCCCCCCCCEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA