| Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008752 |
| Length | 5,352,772 |
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The map label for this gene is yhdF [H]
Identifier: 120613119
GI number: 120613119
Start: 4983743
End: 4984621
Strand: Reverse
Name: yhdF [H]
Synonym: Aave_4486
Alternate gene names: 120613119
Gene position: 4984621-4983743 (Counterclockwise)
Preceding gene: 120613120
Following gene: 120613116
Centisome position: 93.12
GC content: 69.51
Gene sequence:
>879_bases ATGCCCCTCGATCCCCGCACCGCCGGCCCCCGTCCGCCTTTCGAAGACCAGAAGCCCCTCACACCGCCCGGCTCCGAAAC CGACATGCACCCGCAGCCCGACTACGGCGCCACGTCGTACAAGGGCTCGGGCAAGCTCCAGGGGCGCCGCGCCGTCATCA CGGGCGGCGACAGCGGCATCGGCCGCGCGGTGGCGCTGGCCTTCGCGCGCGAGGGCGCGGACGTGCTCATCGCCTATCTG CCCGAGGAAGAGGCCGATGCGCGCAAGACCCTCGACATCGTCACCGCCGAGGGCCGCCGCGCCGTGGGCGTGCCGGGCGA CATCCGCGAAGAGGCCCACTGCAACGCCATCATCGAGCGCGCGGTGAAGGAGTTCGGCGGCATCGACATCCTCGTCAACA ACGCCGCCTACCAGATGTCGCACGAGAGCATCGACGAGATCTCGGCCGAGGAGTTCGACCGCACCTTCCGCACCAACGTC TATGCCACGTTCTACCTGAGCAAGGCGGCGGCCAGGCACATGCCGGCAGGCAGCGCCATCATCAACACCGTCTCGGTGAA CGCGGACAAGCCCAACAAGACGCTGCTGGCCTATGCCTCCACCAAGGGCGCGCTGCAGAACTTCACGGGCGGGCTCGCCC AACTGCTGGCCGACAAGGGCATCCGCGTGAACTGCGTGGCGCCCGGCCCGATCTGGACGCCGCTGATTCCGTCCACGATG CCGATCGAGCGCGCGCGCGAGTTCGGCAAGCAGGTACCGCTGCAGCGCCCCGGCCAACCCGCCGAGGTGGCGCCGGCCTA TGTGATGCTGGCGTCCGACCAGGCGAGCTTCATCTCGGGCGCGACGGTGGCGGTGACGGGCGGCGTACCGATCATCTAG
Upstream 100 bases:
>100_bases GCAGGGTCCGACAGGCAGGCAGAACCTTTTCCTACGGGCTCGACGGGCGCGGGTTTTCCACACTGGGAGGCCGTTTACGA CCTCGCTTGCAGGAGAAGCC
Downstream 100 bases:
>100_bases TGGTGTGAGCCAAAAGTTGGCACCACCCAAGTGCTGTGCCATGCAGTCCGCTCGACGCAGCCCAGGAGCACACCATGGCC CGGCCTCACGCAATGGCTAT
Product: short-chain dehydrogenase/reductase SDR
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 292; Mature: 291
Protein sequence:
>292_residues MPLDPRTAGPRPPFEDQKPLTPPGSETDMHPQPDYGATSYKGSGKLQGRRAVITGGDSGIGRAVALAFAREGADVLIAYL PEEEADARKTLDIVTAEGRRAVGVPGDIREEAHCNAIIERAVKEFGGIDILVNNAAYQMSHESIDEISAEEFDRTFRTNV YATFYLSKAAARHMPAGSAIINTVSVNADKPNKTLLAYASTKGALQNFTGGLAQLLADKGIRVNCVAPGPIWTPLIPSTM PIERAREFGKQVPLQRPGQPAEVAPAYVMLASDQASFISGATVAVTGGVPII
Sequences:
>Translated_292_residues MPLDPRTAGPRPPFEDQKPLTPPGSETDMHPQPDYGATSYKGSGKLQGRRAVITGGDSGIGRAVALAFAREGADVLIAYL PEEEADARKTLDIVTAEGRRAVGVPGDIREEAHCNAIIERAVKEFGGIDILVNNAAYQMSHESIDEISAEEFDRTFRTNV YATFYLSKAAARHMPAGSAIINTVSVNADKPNKTLLAYASTKGALQNFTGGLAQLLADKGIRVNCVAPGPIWTPLIPSTM PIERAREFGKQVPLQRPGQPAEVAPAYVMLASDQASFISGATVAVTGGVPII >Mature_291_residues PLDPRTAGPRPPFEDQKPLTPPGSETDMHPQPDYGATSYKGSGKLQGRRAVITGGDSGIGRAVALAFAREGADVLIAYLP EEEADARKTLDIVTAEGRRAVGVPGDIREEAHCNAIIERAVKEFGGIDILVNNAAYQMSHESIDEISAEEFDRTFRTNVY ATFYLSKAAARHMPAGSAIINTVSVNADKPNKTLLAYASTKGALQNFTGGLAQLLADKGIRVNCVAPGPIWTPLIPSTMP IERAREFGKQVPLQRPGQPAEVAPAYVMLASDQASFISGATVAVTGGVPII
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI32483357, Length=248, Percent_Identity=32.6612903225806, Blast_Score=114, Evalue=1e-25, Organism=Homo sapiens, GI19923817, Length=268, Percent_Identity=32.089552238806, Blast_Score=112, Evalue=4e-25, Organism=Homo sapiens, GI59889578, Length=228, Percent_Identity=34.6491228070175, Blast_Score=109, Evalue=4e-24, Organism=Homo sapiens, GI10190704, Length=257, Percent_Identity=31.9066147859922, Blast_Score=96, Evalue=3e-20, Organism=Homo sapiens, GI5031737, Length=246, Percent_Identity=31.7073170731707, Blast_Score=96, Evalue=5e-20, Organism=Homo sapiens, GI7705925, Length=250, Percent_Identity=32.8, Blast_Score=95, Evalue=9e-20, Organism=Homo sapiens, GI15277342, Length=255, Percent_Identity=28.6274509803922, Blast_Score=94, Evalue=2e-19, Organism=Homo sapiens, GI4758504, Length=260, Percent_Identity=30.7692307692308, Blast_Score=93, Evalue=3e-19, Organism=Homo sapiens, GI40254992, Length=242, Percent_Identity=30.9917355371901, Blast_Score=90, Evalue=2e-18, Organism=Homo sapiens, GI126723750, Length=251, Percent_Identity=28.2868525896414, Blast_Score=84, Evalue=1e-16, Organism=Homo sapiens, GI33667109, Length=191, Percent_Identity=32.9842931937173, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI66933014, Length=253, Percent_Identity=29.2490118577075, Blast_Score=80, Evalue=3e-15, Organism=Homo sapiens, GI83715985, Length=260, Percent_Identity=28.4615384615385, Blast_Score=75, Evalue=7e-14, Organism=Homo sapiens, GI126723191, Length=183, Percent_Identity=30.0546448087432, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI40254986, Length=137, Percent_Identity=33.5766423357664, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI31542939, Length=262, Percent_Identity=25.1908396946565, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI4504505, Length=193, Percent_Identity=29.5336787564767, Blast_Score=70, Evalue=3e-12, Organism=Homo sapiens, GI7706318, Length=228, Percent_Identity=25.8771929824561, Blast_Score=65, Evalue=5e-11, Organism=Escherichia coli, GI1789378, Length=286, Percent_Identity=46.1538461538462, Blast_Score=255, Evalue=2e-69, Organism=Escherichia coli, GI2367175, Length=252, Percent_Identity=35.3174603174603, Blast_Score=135, Evalue=3e-33, Organism=Escherichia coli, GI1789208, Length=247, Percent_Identity=34.412955465587, Blast_Score=130, Evalue=1e-31, Organism=Escherichia coli, GI2367365, Length=245, Percent_Identity=35.5102040816327, Blast_Score=127, Evalue=1e-30, Organism=Escherichia coli, GI87082100, Length=258, Percent_Identity=35.6589147286822, Blast_Score=121, Evalue=7e-29, Organism=Escherichia coli, GI1787905, Length=252, Percent_Identity=32.5396825396825, Blast_Score=119, Evalue=2e-28, Organism=Escherichia coli, GI1787335, Length=250, Percent_Identity=35.2, Blast_Score=117, Evalue=7e-28, Organism=Escherichia coli, GI1790717, Length=249, Percent_Identity=31.7269076305221, Blast_Score=117, Evalue=9e-28, Organism=Escherichia coli, GI1788459, Length=242, Percent_Identity=34.297520661157, Blast_Score=111, Evalue=6e-26, Organism=Escherichia coli, GI87082160, Length=249, Percent_Identity=31.7269076305221, Blast_Score=102, Evalue=2e-23, Organism=Escherichia coli, GI1786812, Length=260, Percent_Identity=29.6153846153846, Blast_Score=92, Evalue=3e-20, Organism=Escherichia coli, GI1787526, Length=263, Percent_Identity=27.7566539923954, Blast_Score=76, Evalue=3e-15, Organism=Escherichia coli, GI1787545, Length=263, Percent_Identity=25.0950570342205, Blast_Score=64, Evalue=8e-12, Organism=Caenorhabditis elegans, GI25147288, Length=253, Percent_Identity=32.0158102766798, Blast_Score=110, Evalue=6e-25, Organism=Caenorhabditis elegans, GI17561402, Length=252, Percent_Identity=32.1428571428571, Blast_Score=109, Evalue=2e-24, Organism=Caenorhabditis elegans, GI17555706, Length=250, Percent_Identity=32.8, Blast_Score=108, Evalue=4e-24, Organism=Caenorhabditis elegans, GI17560676, Length=247, Percent_Identity=29.9595141700405, Blast_Score=105, Evalue=2e-23, Organism=Caenorhabditis elegans, GI17563726, Length=261, Percent_Identity=31.0344827586207, Blast_Score=105, Evalue=3e-23, Organism=Caenorhabditis elegans, GI17562904, Length=268, Percent_Identity=29.1044776119403, Blast_Score=100, Evalue=6e-22, Organism=Caenorhabditis elegans, GI17538480, Length=268, Percent_Identity=30.5970149253731, Blast_Score=99, Evalue=2e-21, Organism=Caenorhabditis elegans, GI193204405, Length=264, Percent_Identity=29.5454545454545, Blast_Score=99, Evalue=3e-21, Organism=Caenorhabditis elegans, GI17560150, Length=263, Percent_Identity=30.0380228136882, Blast_Score=99, Evalue=4e-21, Organism=Caenorhabditis elegans, GI17562906, Length=264, Percent_Identity=26.8939393939394, Blast_Score=96, Evalue=2e-20, Organism=Caenorhabditis elegans, GI17562990, Length=262, Percent_Identity=29.7709923664122, Blast_Score=95, Evalue=4e-20, Organism=Caenorhabditis elegans, GI17559104, Length=259, Percent_Identity=30.5019305019305, Blast_Score=94, Evalue=6e-20, Organism=Caenorhabditis elegans, GI17551412, Length=266, Percent_Identity=30.8270676691729, Blast_Score=93, Evalue=2e-19, Organism=Caenorhabditis elegans, GI72000259, Length=264, Percent_Identity=28.4090909090909, Blast_Score=93, Evalue=2e-19, Organism=Caenorhabditis elegans, GI17531453, Length=266, Percent_Identity=29.6992481203008, Blast_Score=92, Evalue=3e-19, Organism=Caenorhabditis elegans, GI71994600, Length=253, Percent_Identity=30.4347826086957, Blast_Score=92, Evalue=4e-19, Organism=Caenorhabditis elegans, GI71994604, Length=255, Percent_Identity=30.9803921568627, Blast_Score=91, Evalue=5e-19, Organism=Caenorhabditis elegans, GI115534694, Length=244, Percent_Identity=29.9180327868852, Blast_Score=91, Evalue=7e-19, Organism=Caenorhabditis elegans, GI17562910, Length=267, Percent_Identity=28.8389513108614, Blast_Score=91, Evalue=7e-19, Organism=Caenorhabditis elegans, GI17544670, Length=261, Percent_Identity=26.4367816091954, Blast_Score=87, Evalue=1e-17, Organism=Caenorhabditis elegans, GI17560332, Length=270, Percent_Identity=30, Blast_Score=87, Evalue=1e-17, Organism=Caenorhabditis elegans, GI17536025, Length=254, Percent_Identity=29.1338582677165, Blast_Score=86, Evalue=3e-17, Organism=Caenorhabditis elegans, GI17538182, Length=259, Percent_Identity=30.1158301158301, Blast_Score=84, Evalue=9e-17, Organism=Caenorhabditis elegans, GI17562908, Length=266, Percent_Identity=26.3157894736842, Blast_Score=84, Evalue=9e-17, Organism=Caenorhabditis elegans, GI71982365, Length=248, Percent_Identity=27.4193548387097, Blast_Score=82, Evalue=3e-16, Organism=Caenorhabditis elegans, GI17560220, Length=268, Percent_Identity=29.8507462686567, Blast_Score=80, Evalue=9e-16, Organism=Caenorhabditis elegans, GI17536651, Length=258, Percent_Identity=28.2945736434109, Blast_Score=79, Evalue=3e-15, Organism=Caenorhabditis elegans, GI17565030, Length=258, Percent_Identity=27.906976744186, Blast_Score=75, Evalue=4e-14, Organism=Caenorhabditis elegans, GI17508651, Length=252, Percent_Identity=28.1746031746032, Blast_Score=73, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17538486, Length=268, Percent_Identity=25.3731343283582, Blast_Score=67, Evalue=8e-12, Organism=Caenorhabditis elegans, GI17561272, Length=257, Percent_Identity=28.0155642023346, Blast_Score=67, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17567345, Length=196, Percent_Identity=29.0816326530612, Blast_Score=65, Evalue=3e-11, Organism=Saccharomyces cerevisiae, GI6323882, Length=202, Percent_Identity=29.7029702970297, Blast_Score=72, Evalue=1e-13, Organism=Saccharomyces cerevisiae, GI6322861, Length=198, Percent_Identity=32.3232323232323, Blast_Score=70, Evalue=3e-13, Organism=Drosophila melanogaster, GI24644339, Length=252, Percent_Identity=35.7142857142857, Blast_Score=119, Evalue=3e-27, Organism=Drosophila melanogaster, GI28571526, Length=244, Percent_Identity=36.0655737704918, Blast_Score=115, Evalue=2e-26, Organism=Drosophila melanogaster, GI21357041, Length=244, Percent_Identity=34.4262295081967, Blast_Score=112, Evalue=3e-25, Organism=Drosophila melanogaster, GI23397609, Length=251, Percent_Identity=32.2709163346614, Blast_Score=112, Evalue=4e-25, Organism=Drosophila melanogaster, GI24639444, Length=250, Percent_Identity=31.2, Blast_Score=110, Evalue=1e-24, Organism=Drosophila melanogaster, GI21355319, Length=252, Percent_Identity=30.952380952381, Blast_Score=104, Evalue=8e-23, Organism=Drosophila melanogaster, GI17737361, Length=257, Percent_Identity=29.1828793774319, Blast_Score=97, Evalue=1e-20, Organism=Drosophila melanogaster, GI24644337, Length=232, Percent_Identity=31.0344827586207, Blast_Score=82, Evalue=3e-16, Organism=Drosophila melanogaster, GI21357673, Length=195, Percent_Identity=29.7435897435897, Blast_Score=79, Evalue=4e-15, Organism=Drosophila melanogaster, GI24643142, Length=247, Percent_Identity=25.1012145748988, Blast_Score=77, Evalue=2e-14, Organism=Drosophila melanogaster, GI28571387, Length=206, Percent_Identity=31.0679611650485, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI24584748, Length=192, Percent_Identity=30.7291666666667, Blast_Score=69, Evalue=5e-12, Organism=Drosophila melanogaster, GI161076933, Length=192, Percent_Identity=30.7291666666667, Blast_Score=69, Evalue=5e-12, Organism=Drosophila melanogaster, GI18859837, Length=196, Percent_Identity=31.1224489795918, Blast_Score=68, Evalue=6e-12, Organism=Drosophila melanogaster, GI21358495, Length=203, Percent_Identity=29.064039408867, Blast_Score=64, Evalue=9e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 30980; Mature: 30849
Theoretical pI: Translated: 5.75; Mature: 5.75
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPLDPRTAGPRPPFEDQKPLTPPGSETDMHPQPDYGATSYKGSGKLQGRRAVITGGDSGI CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCH GRAVALAFAREGADVLIAYLPEEEADARKTLDIVTAEGRRAVGVPGDIREEAHCNAIIER HHHHHHHHHHCCCEEEEEECCCCCCCHHHEEEEEECCCCEEECCCCCCHHHHHHHHHHHH AVKEFGGIDILVNNAAYQMSHESIDEISAEEFDRTFRTNVYATFYLSKAAARHMPAGSAI HHHHHCCEEEEECCCHHHCCHHHHHHHHHHHHHHHHHHCEEEEEEEHHHHHHCCCCCCCE INTVSVNADKPNKTLLAYASTKGALQNFTGGLAQLLADKGIRVNCVAPGPIWTPLIPSTM EEEEEECCCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCC PIERAREFGKQVPLQRPGQPAEVAPAYVMLASDQASFISGATVAVTGGVPII CHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCHHHHCCCEEEEECCCCCC >Mature Secondary Structure PLDPRTAGPRPPFEDQKPLTPPGSETDMHPQPDYGATSYKGSGKLQGRRAVITGGDSGI CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCH GRAVALAFAREGADVLIAYLPEEEADARKTLDIVTAEGRRAVGVPGDIREEAHCNAIIER HHHHHHHHHHCCCEEEEEECCCCCCCHHHEEEEEECCCCEEECCCCCCHHHHHHHHHHHH AVKEFGGIDILVNNAAYQMSHESIDEISAEEFDRTFRTNVYATFYLSKAAARHMPAGSAI HHHHHCCEEEEECCCHHHCCHHHHHHHHHHHHHHHHHHCEEEEEEEHHHHHHCCCCCCCE INTVSVNADKPNKTLLAYASTKGALQNFTGGLAQLLADKGIRVNCVAPGPIWTPLIPSTM EEEEEECCCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCC PIERAREFGKQVPLQRPGQPAEVAPAYVMLASDQASFISGATVAVTGGVPII CHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCHHHHCCCEEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9579061; 9384377 [H]