| Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008752 |
| Length | 5,352,772 |
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The map label for this gene is 120612995
Identifier: 120612995
GI number: 120612995
Start: 4843343
End: 4845706
Strand: Direct
Name: 120612995
Synonym: Aave_4359
Alternate gene names: NA
Gene position: 4843343-4845706 (Clockwise)
Preceding gene: 120612992
Following gene: 120612999
Centisome position: 90.48
GC content: 58.5
Gene sequence:
>2364_bases ATGGATAACTTTTTCAACTTCGATATCAACGGTTATCGCCGAATGACGGCAGCAGTGGATGCTTCTCATGGTTCGCCGCC CTCCCCAAGGGATGGAGGAAGCCGCACGCAGAGCTTCGATATGCACCCGTTGCGCGAGGCTCTTCCCTCGCTGGAAACCG TGCACGGTCCTGTCCGGACCATGGTGCATTGCGCGCGTAAACCTAAACCAGTGCCCAAGTCAGTCGTGGAACTGGTGAAA ATTCTCCCGAGATTTGGTAAGGGAGAAGCCTGGGAATCGCTGTGCCGAGATTTCCCCGGTATACAAGTTTATTTTTCAGA TTATGGAATCAATGAGCGTGGCTTCGGTTTCCTGCTGAATCACCTGGACAGCGAACAAATTGACAATGTGGTGGAGCAGA CAGAAAACCGGATCAACATTATCTGTTCCGACGATTTCAAAATTATCGCATTGAAAACCGCGGCGACGACAATCGAAACA TGCCGCGCCAAATTCCAGGAACACGCCAAATTCCAGGAACTCTCCAGCTCAACTCTCTCGAATAAATCAGAAGGCAAATA CTACAGAAACCTCATCGATAATTTTATGGATATCCTGGACAGGTTTGAAGCAGGAGAGAGCATACCCTCATTGGCCGAAA CCGTGCCAGGCATCACCGGCTTCATTGGGAACCAGGGCTTCTCGAAAAAGGCCAAATATTTCCTGGAACACATCAAACCC GAGGAAAAGGAGCGGATAGAACTTGCAGTCAAGCGCAGAAACAAAAACGTGAGCGCACCGAAGCCCTCCGGCGTACCGTC CCCGTTCAGCGGGACGCTCCGCTATATCCATGAAAACCCCGACTATCTGATAAATACCTCGAAGGCATTCAGTAATCCAT CGAATTCCATTGCAGACAAGGTATGCGATAAAAACCTCAGCATCCACCTCCTGAAAAAAATAGTCAACATAGAAACCGGC GAACTGACTGCTACCGGAGAGAAGCTCATTTCGAACGCCGATCCCCAGACCCGGCGTCTGATTCGCGCCAACTTCAAGCT CCGTTTCCGGGTGCCCTCCACGCCCGCGGCCGAAACCGCCTCCCCTGCCCATCAGGAGCCCTCTCACGGGCAGCACTATG CTGCGCCCAATGATTCGTTCTTTTCCGGATTCTCGGGAGAAGTGCGCCGCTACCACGAACCCTCGACGCCCCAGTACCCG CCCGCTGCCCCGGCCTTCAGCGAAGCCGGCCCCTACCACGCCCCCTATTACTACGGACAGCCCTATGCTCCACCCGGTGA TTCGTTCTTTTCCGGATTCTCGGGAGAAGTGCGCCGCCACTACGAGCCCCCGACGCCCCAGTACCCTCCCGCCACCCCCG CATCCAGCGAGGCTTCCCTCTATTACGACCCCTACTACAACCCCTATCACGGACAGCAATACGCTCCACCCGGCGATTCG TTCTTTTCTGGATTCTCGGCAGAAGTGCGGCGCCACCACGAACCCTCGACGCCACAGTATCCGCAGAACTCCACCTCCAC ATTCGGCGATCTTTCATCCCTGAACGAAGGCGCGTATTCGACCCGCGATTTCGATCTCAATACGCCGGCGGAAGTCACGC AGCCATGGCGGGGCGATGGTTATGACGACGTCGAGTCGGCGGCCAGCCCCGAACGGATCGACGTGGACGCCCTGCCTTCT CCGCAGAACTCCTCCGCACCGGCAGGCCAGGAATTGGCCCTGGCCGAAGAGGAGTGGCTGGGCGATGAGCACCTGATCAC CTATGTCGGTACCATCGCGGACCGATTGCGGGGCCAGCCCGGCGCGGACTTGCTCAATTTCGCCGACCCGCTGCTGGTGA CCCAGCTGATCCAGGGGGAAAGCGAGCAACGGAACAACGCCATGTACCACATCATCGGCCGGGGCGGGCCCATCGTCTTC CTGCCCGTGAATGCGCCGGACTCCCACTGGTCGCTGCTCGTCATCGACCAGCGTACCGGCAATGCATTCCACTACGACTC CCTGGTCTCTCCCGGGGACGCCAGGAACGCGGTCCACACACGCCAGTACCAGCTGGCCAGCAGGGCTGCGCGGGCCATGG GTATCACCGGGCCTGTCCAGGGCATGCCCATCGCCCGCCAGCGCGACGGCCATTCCTGCGGCGACCATGTGCTCCAGGCC ACCGAACAGCTGGCCCAGAGCGTGATCGCCGGCACGTTCGGCCAGCCGGGCACCATGGACCTGAGCGATCTGCAGACGGA CCGCGGCCTCATTGCCGACACGATCGCCAACGCCACCGCAGACCGTAATGCGGAGCCGCCCCCCGCCACGTCCCGAACGC ACGAAAGGCCAGCGAAGAAAAACAAGAAATGGTGGAAGTTCTAG
Upstream 100 bases:
>100_bases CACCGGAAATCACGAAATATCCGTCGGCGTGCACCGCAACCACCTGGATTTACAGGAATTTCACGGTGCCCCGCGAAACC CGTGATCCACATAAAAAAAA
Downstream 100 bases:
>100_bases CAACCGTTAAGCCGGCGCCTTGCCCAGGAAATCCGGCAACTCGGCCATCGAACCGATGACCGTGAAGGCCCCTGCCGCCC GCAAGGCTTCGGCGGCGTCG
Product: peptidase C48, SUMO/Sentrin/Ubl1
Products: NA
Alternate protein names: Outer Protein D; Virulence Protein
Number of amino acids: Translated: 787; Mature: 787
Protein sequence:
>787_residues MDNFFNFDINGYRRMTAAVDASHGSPPSPRDGGSRTQSFDMHPLREALPSLETVHGPVRTMVHCARKPKPVPKSVVELVK ILPRFGKGEAWESLCRDFPGIQVYFSDYGINERGFGFLLNHLDSEQIDNVVEQTENRINIICSDDFKIIALKTAATTIET CRAKFQEHAKFQELSSSTLSNKSEGKYYRNLIDNFMDILDRFEAGESIPSLAETVPGITGFIGNQGFSKKAKYFLEHIKP EEKERIELAVKRRNKNVSAPKPSGVPSPFSGTLRYIHENPDYLINTSKAFSNPSNSIADKVCDKNLSIHLLKKIVNIETG ELTATGEKLISNADPQTRRLIRANFKLRFRVPSTPAAETASPAHQEPSHGQHYAAPNDSFFSGFSGEVRRYHEPSTPQYP PAAPAFSEAGPYHAPYYYGQPYAPPGDSFFSGFSGEVRRHYEPPTPQYPPATPASSEASLYYDPYYNPYHGQQYAPPGDS FFSGFSAEVRRHHEPSTPQYPQNSTSTFGDLSSLNEGAYSTRDFDLNTPAEVTQPWRGDGYDDVESAASPERIDVDALPS PQNSSAPAGQELALAEEEWLGDEHLITYVGTIADRLRGQPGADLLNFADPLLVTQLIQGESEQRNNAMYHIIGRGGPIVF LPVNAPDSHWSLLVIDQRTGNAFHYDSLVSPGDARNAVHTRQYQLASRAARAMGITGPVQGMPIARQRDGHSCGDHVLQA TEQLAQSVIAGTFGQPGTMDLSDLQTDRGLIADTIANATADRNAEPPPATSRTHERPAKKNKKWWKF
Sequences:
>Translated_787_residues MDNFFNFDINGYRRMTAAVDASHGSPPSPRDGGSRTQSFDMHPLREALPSLETVHGPVRTMVHCARKPKPVPKSVVELVK ILPRFGKGEAWESLCRDFPGIQVYFSDYGINERGFGFLLNHLDSEQIDNVVEQTENRINIICSDDFKIIALKTAATTIET CRAKFQEHAKFQELSSSTLSNKSEGKYYRNLIDNFMDILDRFEAGESIPSLAETVPGITGFIGNQGFSKKAKYFLEHIKP EEKERIELAVKRRNKNVSAPKPSGVPSPFSGTLRYIHENPDYLINTSKAFSNPSNSIADKVCDKNLSIHLLKKIVNIETG ELTATGEKLISNADPQTRRLIRANFKLRFRVPSTPAAETASPAHQEPSHGQHYAAPNDSFFSGFSGEVRRYHEPSTPQYP PAAPAFSEAGPYHAPYYYGQPYAPPGDSFFSGFSGEVRRHYEPPTPQYPPATPASSEASLYYDPYYNPYHGQQYAPPGDS FFSGFSAEVRRHHEPSTPQYPQNSTSTFGDLSSLNEGAYSTRDFDLNTPAEVTQPWRGDGYDDVESAASPERIDVDALPS PQNSSAPAGQELALAEEEWLGDEHLITYVGTIADRLRGQPGADLLNFADPLLVTQLIQGESEQRNNAMYHIIGRGGPIVF LPVNAPDSHWSLLVIDQRTGNAFHYDSLVSPGDARNAVHTRQYQLASRAARAMGITGPVQGMPIARQRDGHSCGDHVLQA TEQLAQSVIAGTFGQPGTMDLSDLQTDRGLIADTIANATADRNAEPPPATSRTHERPAKKNKKWWKF >Mature_787_residues MDNFFNFDINGYRRMTAAVDASHGSPPSPRDGGSRTQSFDMHPLREALPSLETVHGPVRTMVHCARKPKPVPKSVVELVK ILPRFGKGEAWESLCRDFPGIQVYFSDYGINERGFGFLLNHLDSEQIDNVVEQTENRINIICSDDFKIIALKTAATTIET CRAKFQEHAKFQELSSSTLSNKSEGKYYRNLIDNFMDILDRFEAGESIPSLAETVPGITGFIGNQGFSKKAKYFLEHIKP EEKERIELAVKRRNKNVSAPKPSGVPSPFSGTLRYIHENPDYLINTSKAFSNPSNSIADKVCDKNLSIHLLKKIVNIETG ELTATGEKLISNADPQTRRLIRANFKLRFRVPSTPAAETASPAHQEPSHGQHYAAPNDSFFSGFSGEVRRYHEPSTPQYP PAAPAFSEAGPYHAPYYYGQPYAPPGDSFFSGFSGEVRRHYEPPTPQYPPATPASSEASLYYDPYYNPYHGQQYAPPGDS FFSGFSAEVRRHHEPSTPQYPQNSTSTFGDLSSLNEGAYSTRDFDLNTPAEVTQPWRGDGYDDVESAASPERIDVDALPS PQNSSAPAGQELALAEEEWLGDEHLITYVGTIADRLRGQPGADLLNFADPLLVTQLIQGESEQRNNAMYHIIGRGGPIVF LPVNAPDSHWSLLVIDQRTGNAFHYDSLVSPGDARNAVHTRQYQLASRAARAMGITGPVQGMPIARQRDGHSCGDHVLQA TEQLAQSVIAGTFGQPGTMDLSDLQTDRGLIADTIANATADRNAEPPPATSRTHERPAKKNKKWWKF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 87061; Mature: 87061
Theoretical pI: Translated: 6.32; Mature: 6.32
Prosite motif: PS50600 ULP_PROTEASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDNFFNFDINGYRRMTAAVDASHGSPPSPRDGGSRTQSFDMHPLREALPSLETVHGPVRT CCCEEECCCCCCEEEEHEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH MVHCARKPKPVPKSVVELVKILPRFGKGEAWESLCRDFPGIQVYFSDYGINERGFGFLLN HHHHHCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHH HLDSEQIDNVVEQTENRINIICSDDFKIIALKTAATTIETCRAKFQEHAKFQELSSSTLS HCCHHHHHHHHHHCCCCEEEEECCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHC NKSEGKYYRNLIDNFMDILDRFEAGESIPSLAETVPGITGFIGNQGFSKKAKYFLEHIKP CCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCHHHHHCCCCCHHHHHHHHHHCCC EEKERIELAVKRRNKNVSAPKPSGVPSPFSGTLRYIHENPDYLINTSKAFSNPSNSIADK CHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEECHHHHCCCCHHHHHH VCDKNLSIHLLKKIVNIETGELTATGEKLISNADPQTRRLIRANFKLRFRVPSTPAAETA HHCCCCHHHHHHHHHCCCCCCEEECHHHHHCCCCHHHHHHHEECCEEEEECCCCCCCCCC SPAHQEPSHGQHYAAPNDSFFSGFSGEVRRYHEPSTPQYPPAAPAFSEAGPYHAPYYYGQ CCCCCCCCCCCCCCCCCCHHHCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC PYAPPGDSFFSGFSGEVRRHYEPPTPQYPPATPASSEASLYYDPYYNPYHGQQYAPPGDS CCCCCCHHHHCCCCCHHHHCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCHH FFSGFSAEVRRHHEPSTPQYPQNSTSTFGDLSSLNEGAYSTRDFDLNTPAEVTQPWRGDG HHHCHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHCCCCCCCC YDDVESAASPERIDVDALPSPQNSSAPAGQELALAEEEWLGDEHLITYVGTIADRLRGQP CHHHHHCCCCCCEECCCCCCCCCCCCCCCCCEEHHHHHHCCCHHHHHHHHHHHHHHCCCC GADLLNFADPLLVTQLIQGESEQRNNAMYHIIGRGGPIVFLPVNAPDSHWSLLVIDQRTG CCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCEEEEEEECCCC NAFHYDSLVSPGDARNAVHTRQYQLASRAARAMGITGPVQGMPIARQRDGHSCGDHVLQA CEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHH TEQLAQSVIAGTFGQPGTMDLSDLQTDRGLIADTIANATADRNAEPPPATSRTHERPAKK HHHHHHHHHHCCCCCCCCCCHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHC NKKWWKF CCCCCCC >Mature Secondary Structure MDNFFNFDINGYRRMTAAVDASHGSPPSPRDGGSRTQSFDMHPLREALPSLETVHGPVRT CCCEEECCCCCCEEEEHEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH MVHCARKPKPVPKSVVELVKILPRFGKGEAWESLCRDFPGIQVYFSDYGINERGFGFLLN HHHHHCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHH HLDSEQIDNVVEQTENRINIICSDDFKIIALKTAATTIETCRAKFQEHAKFQELSSSTLS HCCHHHHHHHHHHCCCCEEEEECCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHC NKSEGKYYRNLIDNFMDILDRFEAGESIPSLAETVPGITGFIGNQGFSKKAKYFLEHIKP CCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCHHHHHCCCCCHHHHHHHHHHCCC EEKERIELAVKRRNKNVSAPKPSGVPSPFSGTLRYIHENPDYLINTSKAFSNPSNSIADK CHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEECHHHHCCCCHHHHHH VCDKNLSIHLLKKIVNIETGELTATGEKLISNADPQTRRLIRANFKLRFRVPSTPAAETA HHCCCCHHHHHHHHHCCCCCCEEECHHHHHCCCCHHHHHHHEECCEEEEECCCCCCCCCC SPAHQEPSHGQHYAAPNDSFFSGFSGEVRRYHEPSTPQYPPAAPAFSEAGPYHAPYYYGQ CCCCCCCCCCCCCCCCCCHHHCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC PYAPPGDSFFSGFSGEVRRHYEPPTPQYPPATPASSEASLYYDPYYNPYHGQQYAPPGDS CCCCCCHHHHCCCCCHHHHCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCHH FFSGFSAEVRRHHEPSTPQYPQNSTSTFGDLSSLNEGAYSTRDFDLNTPAEVTQPWRGDG HHHCHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHCCCCCCCC YDDVESAASPERIDVDALPSPQNSSAPAGQELALAEEEWLGDEHLITYVGTIADRLRGQP CHHHHHCCCCCCEECCCCCCCCCCCCCCCCCEEHHHHHHCCCHHHHHHHHHHHHHHCCCC GADLLNFADPLLVTQLIQGESEQRNNAMYHIIGRGGPIVFLPVNAPDSHWSLLVIDQRTG CCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCEEEEEEECCCC NAFHYDSLVSPGDARNAVHTRQYQLASRAARAMGITGPVQGMPIARQRDGHSCGDHVLQA CEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHH TEQLAQSVIAGTFGQPGTMDLSDLQTDRGLIADTIANATADRNAEPPPATSRTHERPAKK HHHHHHHHHHCCCCCCCCCCHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHC NKKWWKF CCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA