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The map label for this gene is rng [H]

Identifier: 120611855

GI number: 120611855

Start: 3524894

End: 3526447

Strand: Reverse

Name: rng [H]

Synonym: Aave_3196

Alternate gene names: 120611855

Gene position: 3526447-3524894 (Counterclockwise)

Preceding gene: 120611856

Following gene: 120611840

Centisome position: 65.88

GC content: 68.28

Gene sequence:

>1554_bases
TTGAGGCATCATCGGTTCCCGAGCACCTGCTCCCATCCCGCCCGCCCTCGACCCGCGCCGCCCGCCATGCAACAAGACAT
CCTCATCAATTGGTCCCCCCAGGAAACCCGCGTCGCCGTCGTCGAGCACGGCGCCGTGCAGGAGCTGCACGTGGAGCGCA
CGCTGGAGCAGGGGCTGGTGGGCAACGTCTATCTGGGCAAGGTCTCGCGCGTGCTGCCGGGCATGCAGTCCGCCTTCATC
GACATCGGGCTGGAGCGCGCGGCCTTCCTGCACGTGGCCGACGTGTGGCACCGACAGGAGGGCGGCGAGGCACCCATGTT
CGCGCGCAAGGGCGAGCCGCCGCTGCCCATCGAGAAGCAGGTGTTCGAGGGGCAGGCGCTCATGGTGCAGGTCATCAAGG
ACCCGATCGGCACCAAGGGCGCGCGGCTGTCCACCCAGATCAGCATCGCCGGGCGGCTGCTCGTCTTCCTGCCGCAGGAC
GACCACGTGGGCGTGTCGCAGAAGATCCCGGCCGCCGAGCGCGATGCGCTGCGCGCCCGCCTGCAGGCCCTGGTGGGCGA
CAAGGCCACGGGCGGGGGCGGCGGCTTCATCCTGCGCACCAATGGCGAGGATTCGTCCGACGCGGAACTGGCCGAGGACA
CCGCCTACCTGCGCAAGACCTGGGCGCGCATCAAGGAGGCCGCCATGCGCCAGCCGCCGGCCTCGCTGCTGCACCAGGAC
CTGAACCTGCTGCAGCGCGTGCTGCGCGACCTCGTGGGCGAGGAAACCGCCAGCATCCGCATCGACTCGCGCGAGCAGTT
CGCCCTGCTGCAGGCCTTCGGCCGAGAGTTCACCCCGGCGGCCGTGCCCAAGCTGCAGCTCTACAAGGGCGAGCGGCCCA
TCTTCGACCTCTATGGCATCGACGAAGAAATCGCCCGCGCCCTGGGCCGGCGCGTGGATTTGAAATCCGGCGGCTACCTC
ATCGTGGACCAGACCGAGGCGCTCACCACCATCGACGTGAACACCGGCGGCTACGTCGGCGCGCGCAATTTCGACGACAC
CATCTTCAAGACCAACCTGGAAGCCGCCCAGGCCATCGCCCGCCAGCTGCGGTTGCGCAACCTGGGCGGCATCATCATCG
CGGACTTCATCGACATGGCGCGGGAAGACCACCAGCACGCCGTGCTGGCCGAATTCCGCAAGCAGCTCGCGCGCGACCGC
GTCAAGACCATGACCGGCGGCTTCTCGCAGCTCGGCCTCGTCGAGATGACGCGCAAGCGCACCCGCGAATCCCTGGCCCA
CATGCTCTGCGAACCCTGCGCGCACTGCCAGGGCAAAGGCAGCGTGAAGACCGCCCGCAGCGTCTGCTACGACATCCTGC
GCGAGATCCTGCGCGAGGCCCGCCAGTTCAACCCGCGCGAGTTCCGGGTGGTCGCCTCCGCCAAGGTGGTGGAGCTGTTC
CTGGACGAGGAGAGCCAGCATCTGGCGGGCTTGTCGGATTTCATCGGCAAGCCGATATCGCTGCAGGCGGAGAGTGGGCT
GGGGCAGGAGCAGTACGACATCGTGTTGTTGTGA

Upstream 100 bases:

>100_bases
AACTGCTGCGGCAGGCCGGCATGCCCGGCTGAAGGTGGCCGGGCCCCGGGGCACAGGCCGGGGCAGGGCGTGAATCCCGT
TCCCGGCGAACGGGGGGCCG

Downstream 100 bases:

>100_bases
GGGTCAGGGCTTGGTGTTGGGGCAGCCCGGTATCTGCGCCGCTTCCGAGCATTCCGACGGGATGCTTTCGAAGAGTACAT
CGCGACCGACACGTACGCGG

Product: ribonuclease G

Products: NA

Alternate protein names: RNase G; Cytoplasmic axial filament protein [H]

Number of amino acids: Translated: 517; Mature: 517

Protein sequence:

>517_residues
MRHHRFPSTCSHPARPRPAPPAMQQDILINWSPQETRVAVVEHGAVQELHVERTLEQGLVGNVYLGKVSRVLPGMQSAFI
DIGLERAAFLHVADVWHRQEGGEAPMFARKGEPPLPIEKQVFEGQALMVQVIKDPIGTKGARLSTQISIAGRLLVFLPQD
DHVGVSQKIPAAERDALRARLQALVGDKATGGGGGFILRTNGEDSSDAELAEDTAYLRKTWARIKEAAMRQPPASLLHQD
LNLLQRVLRDLVGEETASIRIDSREQFALLQAFGREFTPAAVPKLQLYKGERPIFDLYGIDEEIARALGRRVDLKSGGYL
IVDQTEALTTIDVNTGGYVGARNFDDTIFKTNLEAAQAIARQLRLRNLGGIIIADFIDMAREDHQHAVLAEFRKQLARDR
VKTMTGGFSQLGLVEMTRKRTRESLAHMLCEPCAHCQGKGSVKTARSVCYDILREILREARQFNPREFRVVASAKVVELF
LDEESQHLAGLSDFIGKPISLQAESGLGQEQYDIVLL

Sequences:

>Translated_517_residues
MRHHRFPSTCSHPARPRPAPPAMQQDILINWSPQETRVAVVEHGAVQELHVERTLEQGLVGNVYLGKVSRVLPGMQSAFI
DIGLERAAFLHVADVWHRQEGGEAPMFARKGEPPLPIEKQVFEGQALMVQVIKDPIGTKGARLSTQISIAGRLLVFLPQD
DHVGVSQKIPAAERDALRARLQALVGDKATGGGGGFILRTNGEDSSDAELAEDTAYLRKTWARIKEAAMRQPPASLLHQD
LNLLQRVLRDLVGEETASIRIDSREQFALLQAFGREFTPAAVPKLQLYKGERPIFDLYGIDEEIARALGRRVDLKSGGYL
IVDQTEALTTIDVNTGGYVGARNFDDTIFKTNLEAAQAIARQLRLRNLGGIIIADFIDMAREDHQHAVLAEFRKQLARDR
VKTMTGGFSQLGLVEMTRKRTRESLAHMLCEPCAHCQGKGSVKTARSVCYDILREILREARQFNPREFRVVASAKVVELF
LDEESQHLAGLSDFIGKPISLQAESGLGQEQYDIVLL
>Mature_517_residues
MRHHRFPSTCSHPARPRPAPPAMQQDILINWSPQETRVAVVEHGAVQELHVERTLEQGLVGNVYLGKVSRVLPGMQSAFI
DIGLERAAFLHVADVWHRQEGGEAPMFARKGEPPLPIEKQVFEGQALMVQVIKDPIGTKGARLSTQISIAGRLLVFLPQD
DHVGVSQKIPAAERDALRARLQALVGDKATGGGGGFILRTNGEDSSDAELAEDTAYLRKTWARIKEAAMRQPPASLLHQD
LNLLQRVLRDLVGEETASIRIDSREQFALLQAFGREFTPAAVPKLQLYKGERPIFDLYGIDEEIARALGRRVDLKSGGYL
IVDQTEALTTIDVNTGGYVGARNFDDTIFKTNLEAAQAIARQLRLRNLGGIIIADFIDMAREDHQHAVLAEFRKQLARDR
VKTMTGGFSQLGLVEMTRKRTRESLAHMLCEPCAHCQGKGSVKTARSVCYDILREILREARQFNPREFRVVASAKVVELF
LDEESQHLAGLSDFIGKPISLQAESGLGQEQYDIVLL

Specific function: Involved in the processing of the 5'-end of 16S rRNA. Could be involved in chromosome segregation and cell division. It may be one of the components of the cytoplasmic axial filaments bundles or merely regulate the formation of this structure [H]

COG id: COG1530

COG function: function code J; Ribonucleases G and E

Gene ontology:

Cell location: Cytoplasm, cytoskeleton [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S1 motif domain [H]

Homologues:

Organism=Escherichia coli, GI87082235, Length=498, Percent_Identity=51.8072289156626, Blast_Score=488, Evalue=1e-139,
Organism=Escherichia coli, GI1787325, Length=464, Percent_Identity=36.2068965517241, Blast_Score=269, Evalue=4e-73,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR003029
- InterPro:   IPR019307
- InterPro:   IPR022967
- InterPro:   IPR004659 [H]

Pfam domain/function: PF10150 RNase_E_G; PF00575 S1 [H]

EC number: 3.1.4.- [C]

Molecular weight: Translated: 57363; Mature: 57363

Theoretical pI: Translated: 7.22; Mature: 7.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRHHRFPSTCSHPARPRPAPPAMQQDILINWSPQETRVAVVEHGAVQELHVERTLEQGLV
CCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEECCCHHHHHHHHHHHCCCC
GNVYLGKVSRVLPGMQSAFIDIGLERAAFLHVADVWHRQEGGEAPMFARKGEPPLPIEKQ
CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHH
VFEGQALMVQVIKDPIGTKGARLSTQISIAGRLLVFLPQDDHVGVSQKIPAAERDALRAR
HHCCHHHHHHHHHCCCCCCCCCEEEEEEEECEEEEEECCCCCCCCCCCCCCHHHHHHHHH
LQALVGDKATGGGGGFILRTNGEDSSDAELAEDTAYLRKTWARIKEAAMRQPPASLLHQD
HHHHHCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
LNLLQRVLRDLVGEETASIRIDSREQFALLQAFGREFTPAAVPKLQLYKGERPIFDLYGI
HHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHCCCCCCCCCCCEEEECCCCCEEEECCC
DEEIARALGRRVDLKSGGYLIVDQTEALTTIDVNTGGYVGARNFDDTIFKTNLEAAQAIA
CHHHHHHHCCEEEECCCCEEEEECCCCEEEEECCCCCEECCCCCCCHHHHCCHHHHHHHH
RQLRLRNLGGIIIADFIDMAREDHQHAVLAEFRKQLARDRVKTMTGGFSQLGLVEMTRKR
HHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
TRESLAHMLCEPCAHCQGKGSVKTARSVCYDILREILREARQFNPREFRVVASAKVVELF
HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHH
LDEESQHLAGLSDFIGKPISLQAESGLGQEQYDIVLL
HCCCHHHHHCHHHHHCCCEEEEECCCCCCCCCCEEEC
>Mature Secondary Structure
MRHHRFPSTCSHPARPRPAPPAMQQDILINWSPQETRVAVVEHGAVQELHVERTLEQGLV
CCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEECCCHHHHHHHHHHHCCCC
GNVYLGKVSRVLPGMQSAFIDIGLERAAFLHVADVWHRQEGGEAPMFARKGEPPLPIEKQ
CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHH
VFEGQALMVQVIKDPIGTKGARLSTQISIAGRLLVFLPQDDHVGVSQKIPAAERDALRAR
HHCCHHHHHHHHHCCCCCCCCCEEEEEEEECEEEEEECCCCCCCCCCCCCCHHHHHHHHH
LQALVGDKATGGGGGFILRTNGEDSSDAELAEDTAYLRKTWARIKEAAMRQPPASLLHQD
HHHHHCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
LNLLQRVLRDLVGEETASIRIDSREQFALLQAFGREFTPAAVPKLQLYKGERPIFDLYGI
HHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHCCCCCCCCCCCEEEECCCCCEEEECCC
DEEIARALGRRVDLKSGGYLIVDQTEALTTIDVNTGGYVGARNFDDTIFKTNLEAAQAIA
CHHHHHHHCCEEEECCCCEEEEECCCCEEEEECCCCCEECCCCCCCHHHHCCHHHHHHHH
RQLRLRNLGGIIIADFIDMAREDHQHAVLAEFRKQLARDRVKTMTGGFSQLGLVEMTRKR
HHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
TRESLAHMLCEPCAHCQGKGSVKTARSVCYDILREILREARQFNPREFRVVASAKVVELF
HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHH
LDEESQHLAGLSDFIGKPISLQAESGLGQEQYDIVLL
HCCCHHHHHCHHHHHCCCEEEEECCCCCCCCCCEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]