| Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008752 |
| Length | 5,352,772 |
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The map label for this gene is treZ [H]
Identifier: 120611647
GI number: 120611647
Start: 3277378
End: 3279201
Strand: Direct
Name: treZ [H]
Synonym: Aave_2984
Alternate gene names: 120611647
Gene position: 3277378-3279201 (Clockwise)
Preceding gene: 120611646
Following gene: 120611648
Centisome position: 61.23
GC content: 71.0
Gene sequence:
>1824_bases ATGAAGCACCAGCACGACATGCCGATCGGCGCCCGCCTCCTTCCTGAAGGCGGCGTCCACTTCACCCTCTGGGCCCCCGC CGCCTCGCGGCTCACCCTCCACCACCGCCGCGCACCGGGCGCGGAGCCCGCGCAGGTTCCGGGCCGCCGGGATGCGGACG GTTTCTGGCAGGCCACCGTGCCGGAGGCCGGCCCGGACACGCTCTATCAATGGCAGGCGGACAATGGTCCCCTGGTGCCC GATCCGGCATCGCGCAGCAATCCCGACGGTCCGCACGGCCCGAGCCGCGTGACCGATCCGGCCGCCTTCGACTGGACGGT CGAGGGCTGGACAGGCCGGCCGTGGAGCGACACCGTGCTCTACGAACTGCACGTGGGTACCTTCACGCCCGAGGGTACGT TCGCCGCGGCCATGCAGCGCCTGCCCTGGCTGGCCGAACAGGGCTTCACCGCCATCGAGCTCATGCCCGTGGCCACCTTC GGCGGGCGCCACGGCTGGGGCTACGACGGCGTTCTGCCGTTCGCGCCGCACCCGGCCTACGGCACGCCGGACGACATGAA GCGCTTCATCGACCGGGCCCATGCGCTCGGCCTGATGGTGTTCCTGGACGTCGTGTACAACCACTTCGGCCCGGACGGCA ACTACCTGGGCAGCTACGCCCCGGCCTTCTTCTCGGAAACCCACCACAGCCCCTGGGGCGCGGCCATCAATTTCGACGGC AAGGACAGCGGGCCGGTGCGCGAGTTCTTCATCCAGAACGCGCTCTACTGGGTGCGAGAATTCCGCATCGACGGCCTGCG CCTGGATGCCGTCCATGCCATCGTGGACGACGGATCGCCCCACGTGCTCGAAGACCTCGCGCAGCGCGTGCGGCAGGCCA CCGAGGGCCGGCACGTCCACCTCGTCCTGGAAAACGAGAAGAACGAGAGCCAGCGCCTGGCCCCCCGGCCCGAGCCCACG CGCTACGACGCGCAGTGGAACGACGACTTCCACCATGCCCTGCATGTCGCCCTCACGGGAGAGCGCCAGGGCTACTACGC CGACTACGCGCATGCGCCGCTGGACGGGCTCGCGCATAGCTTCGCGGGCGGCTATGTGTTCGCGCCCTCGCACCGCGACG GCGATGGCCGGCGCCTGGAACGGGCACCCGCCGCGCCCCAGCCCCTGGCCACGATGGTGAACTTCTGCGGCAACCACGAC CAGATCGGCAACCGCGCTTTCGGCGAGCGGCTCTCGCACCTGGTGCCGCAGCCCGCGGCCGAACTCGCACTGCTGTCCGC GCTGCTCACGCCCGCCACGCCGCTGGTGTTCATGGGCGACGAATTCGGCGCGGAAACACCTTTCCTGTATTTCGCCGACT GGACGGGCGAGCTCCGCGAGGCGGTTCGCCAGGGACGCCAGCGCGAATTCCGGCTCGAAGCCGGCTCGGGCCGCGAATTG CCCGACCCCTGCGACGCCGCCACCCTCGAACGCAGCCGCCTCGACTGGCGCCAGGCGGAAGGCCCCGCCGGACAGGTGCG GCTCGCGCTGGTCCGCAACGCCCTGTCCGCACGCCGGCAATGGATCGCCCCGCGCCTGTCCCGGCTGCGCTCCGGCACGC ACACGGCGCGCCGCGTGGGAGCGACCGGGCTGCAGGTGGAATGGGACTACGACGATGGAACACGCCTCGTGATGCAAATG AACCTGGGCAAAGACTCCGTCACGCCGCAGACCCCTGAGGCGGCCGCCGAGCCTGGCCTGCGGGTCTTCCAGCACCGCTG GGAAGGCGGTGGCGCCTGGGCCCCTTGGTCCGCGCGGTGGACGCTGCAGGGGGTACCGGCATGA
Upstream 100 bases:
>100_bases CCGCAGATACCGAGCCTGTAGCTTCCGGAGGCCAATACGTGCTGCCGGGGCATTCCATGGCGATCCTCACCGCATTGGGC GCTTCCGGCGACCCCGCTCC
Downstream 100 bases:
>100_bases ACGCCCACCCCCACGAGGACCACGACGGCCTGCACGAACGTGCCCGCCGGGCAGGCATCGCGCTCCAGTACGCCAGCTTC TGGGGCGAGCACCGCGACGT
Product: malto-oligosyltrehalose trehalohydrolase
Products: NA
Alternate protein names: MTHase; 4-alpha-D-((1->4)-alpha-D-glucano)trehalose trehalohydrolase; Maltooligosyl trehalose trehalohydrolase [H]
Number of amino acids: Translated: 607; Mature: 607
Protein sequence:
>607_residues MKHQHDMPIGARLLPEGGVHFTLWAPAASRLTLHHRRAPGAEPAQVPGRRDADGFWQATVPEAGPDTLYQWQADNGPLVP DPASRSNPDGPHGPSRVTDPAAFDWTVEGWTGRPWSDTVLYELHVGTFTPEGTFAAAMQRLPWLAEQGFTAIELMPVATF GGRHGWGYDGVLPFAPHPAYGTPDDMKRFIDRAHALGLMVFLDVVYNHFGPDGNYLGSYAPAFFSETHHSPWGAAINFDG KDSGPVREFFIQNALYWVREFRIDGLRLDAVHAIVDDGSPHVLEDLAQRVRQATEGRHVHLVLENEKNESQRLAPRPEPT RYDAQWNDDFHHALHVALTGERQGYYADYAHAPLDGLAHSFAGGYVFAPSHRDGDGRRLERAPAAPQPLATMVNFCGNHD QIGNRAFGERLSHLVPQPAAELALLSALLTPATPLVFMGDEFGAETPFLYFADWTGELREAVRQGRQREFRLEAGSGREL PDPCDAATLERSRLDWRQAEGPAGQVRLALVRNALSARRQWIAPRLSRLRSGTHTARRVGATGLQVEWDYDDGTRLVMQM NLGKDSVTPQTPEAAAEPGLRVFQHRWEGGGAWAPWSARWTLQGVPA
Sequences:
>Translated_607_residues MKHQHDMPIGARLLPEGGVHFTLWAPAASRLTLHHRRAPGAEPAQVPGRRDADGFWQATVPEAGPDTLYQWQADNGPLVP DPASRSNPDGPHGPSRVTDPAAFDWTVEGWTGRPWSDTVLYELHVGTFTPEGTFAAAMQRLPWLAEQGFTAIELMPVATF GGRHGWGYDGVLPFAPHPAYGTPDDMKRFIDRAHALGLMVFLDVVYNHFGPDGNYLGSYAPAFFSETHHSPWGAAINFDG KDSGPVREFFIQNALYWVREFRIDGLRLDAVHAIVDDGSPHVLEDLAQRVRQATEGRHVHLVLENEKNESQRLAPRPEPT RYDAQWNDDFHHALHVALTGERQGYYADYAHAPLDGLAHSFAGGYVFAPSHRDGDGRRLERAPAAPQPLATMVNFCGNHD QIGNRAFGERLSHLVPQPAAELALLSALLTPATPLVFMGDEFGAETPFLYFADWTGELREAVRQGRQREFRLEAGSGREL PDPCDAATLERSRLDWRQAEGPAGQVRLALVRNALSARRQWIAPRLSRLRSGTHTARRVGATGLQVEWDYDDGTRLVMQM NLGKDSVTPQTPEAAAEPGLRVFQHRWEGGGAWAPWSARWTLQGVPA >Mature_607_residues MKHQHDMPIGARLLPEGGVHFTLWAPAASRLTLHHRRAPGAEPAQVPGRRDADGFWQATVPEAGPDTLYQWQADNGPLVP DPASRSNPDGPHGPSRVTDPAAFDWTVEGWTGRPWSDTVLYELHVGTFTPEGTFAAAMQRLPWLAEQGFTAIELMPVATF GGRHGWGYDGVLPFAPHPAYGTPDDMKRFIDRAHALGLMVFLDVVYNHFGPDGNYLGSYAPAFFSETHHSPWGAAINFDG KDSGPVREFFIQNALYWVREFRIDGLRLDAVHAIVDDGSPHVLEDLAQRVRQATEGRHVHLVLENEKNESQRLAPRPEPT RYDAQWNDDFHHALHVALTGERQGYYADYAHAPLDGLAHSFAGGYVFAPSHRDGDGRRLERAPAAPQPLATMVNFCGNHD QIGNRAFGERLSHLVPQPAAELALLSALLTPATPLVFMGDEFGAETPFLYFADWTGELREAVRQGRQREFRLEAGSGREL PDPCDAATLERSRLDWRQAEGPAGQVRLALVRNALSARRQWIAPRLSRLRSGTHTARRVGATGLQVEWDYDDGTRLVMQM NLGKDSVTPQTPEAAAEPGLRVFQHRWEGGGAWAPWSARWTLQGVPA
Specific function: Catalyzes The Formation Of The Alpha-1,6-Glucosidic Linkages In Glycogen By Scission Of A 1,4-Alpha-Linked Oligosaccharide From Growing Alpha-1,4-Glucan Chains And The Subsequent Attachment Of The Oligosaccharide To The Alpha-1,6 Position. Has A Preferenc
COG id: COG0296
COG function: function code G; 1,4-alpha-glucan branching enzyme
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyl hydrolase 13 family [H]
Homologues:
Organism=Homo sapiens, GI189458812, Length=293, Percent_Identity=25.5972696245734, Blast_Score=86, Evalue=8e-17, Organism=Escherichia coli, GI1789839, Length=277, Percent_Identity=29.6028880866426, Blast_Score=98, Evalue=2e-21, Organism=Escherichia coli, GI2367229, Length=519, Percent_Identity=26.7822736030828, Blast_Score=82, Evalue=1e-16, Organism=Caenorhabditis elegans, GI17554896, Length=307, Percent_Identity=27.0358306188925, Blast_Score=88, Evalue=2e-17, Organism=Caenorhabditis elegans, GI32564391, Length=172, Percent_Identity=31.9767441860465, Blast_Score=85, Evalue=9e-17, Organism=Saccharomyces cerevisiae, GI6320826, Length=172, Percent_Identity=29.6511627906977, Blast_Score=77, Evalue=1e-14, Organism=Drosophila melanogaster, GI28573410, Length=167, Percent_Identity=31.1377245508982, Blast_Score=75, Evalue=9e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013780 - InterPro: IPR006047 - InterPro: IPR004193 - InterPro: IPR017853 - InterPro: IPR013781 - InterPro: IPR013783 - InterPro: IPR014756 - InterPro: IPR015156 - InterPro: IPR012768 [H]
Pfam domain/function: PF09071 Alpha-amyl_C; PF00128 Alpha-amylase; PF02922 CBM_48 [H]
EC number: =3.2.1.141 [H]
Molecular weight: Translated: 67275; Mature: 67275
Theoretical pI: Translated: 6.29; Mature: 6.29
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKHQHDMPIGARLLPEGGVHFTLWAPAASRLTLHHRRAPGAEPAQVPGRRDADGFWQATV CCCCCCCCCCCEECCCCCEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEECC PEAGPDTLYQWQADNGPLVPDPASRSNPDGPHGPSRVTDPAAFDWTVEGWTGRPWSDTVL CCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCEEE YELHVGTFTPEGTFAAAMQRLPWLAEQGFTAIELMPVATFGGRHGWGYDGVLPFAPHPAY EEEEECCCCCCCHHHHHHHHCCHHHHCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCC GTPDDMKRFIDRAHALGLMVFLDVVYNHFGPDGNYLGSYAPAFFSETHHSPWGAAINFDG CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCCCEEEECCC KDSGPVREFFIQNALYWVREFRIDGLRLDAVHAIVDDGSPHVLEDLAQRVRQATEGRHVH CCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHCCCEEE LVLENEKNESQRLAPRPEPTRYDAQWNDDFHHALHVALTGERQGYYADYAHAPLDGLAHS EEEECCCCCHHCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHH FAGGYVFAPSHRDGDGRRLERAPAAPQPLATMVNFCGNHDQIGNRAFGERLSHLVPQPAA HCCCEEECCCCCCCCCCHHHCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCHH ELALLSALLTPATPLVFMGDEFGAETPFLYFADWTGELREAVRQGRQREFRLEAGSGREL HHHHHHHHHCCCCCEEEECCCCCCCCCEEEEECCCHHHHHHHHHCCCEEEEEECCCCCCC PDPCDAATLERSRLDWRQAEGPAGQVRLALVRNALSARRQWIAPRLSRLRSGTHTARRVG CCCCCHHHHHHHHCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHC ATGLQVEWDYDDGTRLVMQMNLGKDSVTPQTPEAAAEPGLRVFQHRWEGGGAWAPWSARW CCCEEEEEECCCCCEEEEEEECCCCCCCCCCCHHHHCCCHHHHHHHCCCCCCCCCCCCEE TLQGVPA EECCCCC >Mature Secondary Structure MKHQHDMPIGARLLPEGGVHFTLWAPAASRLTLHHRRAPGAEPAQVPGRRDADGFWQATV CCCCCCCCCCCEECCCCCEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEECC PEAGPDTLYQWQADNGPLVPDPASRSNPDGPHGPSRVTDPAAFDWTVEGWTGRPWSDTVL CCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCEEE YELHVGTFTPEGTFAAAMQRLPWLAEQGFTAIELMPVATFGGRHGWGYDGVLPFAPHPAY EEEEECCCCCCCHHHHHHHHCCHHHHCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCC GTPDDMKRFIDRAHALGLMVFLDVVYNHFGPDGNYLGSYAPAFFSETHHSPWGAAINFDG CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCCCEEEECCC KDSGPVREFFIQNALYWVREFRIDGLRLDAVHAIVDDGSPHVLEDLAQRVRQATEGRHVH CCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHCCCEEE LVLENEKNESQRLAPRPEPTRYDAQWNDDFHHALHVALTGERQGYYADYAHAPLDGLAHS EEEECCCCCHHCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHH FAGGYVFAPSHRDGDGRRLERAPAAPQPLATMVNFCGNHDQIGNRAFGERLSHLVPQPAA HCCCEEECCCCCCCCCCHHHCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCHH ELALLSALLTPATPLVFMGDEFGAETPFLYFADWTGELREAVRQGRQREFRLEAGSGREL HHHHHHHHHCCCCCEEEECCCCCCCCCEEEEECCCHHHHHHHHHCCCEEEEEECCCCCCC PDPCDAATLERSRLDWRQAEGPAGQVRLALVRNALSARRQWIAPRLSRLRSGTHTARRVG CCCCCHHHHHHHHCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHC ATGLQVEWDYDDGTRLVMQMNLGKDSVTPQTPEAAAEPGLRVFQHRWEGGGAWAPWSARW CCCEEEEEECCCCCEEEEEEECCCCCCCCCCCHHHHCCCHHHHHHHCCCCCCCCCCCCEE TLQGVPA EECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8899719; 11427726 [H]