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The map label for this gene is psd [H]

Identifier: 120611618

GI number: 120611618

Start: 3244076

End: 3244960

Strand: Direct

Name: psd [H]

Synonym: Aave_2955

Alternate gene names: 120611618

Gene position: 3244076-3244960 (Clockwise)

Preceding gene: 120611614

Following gene: 120611620

Centisome position: 60.61

GC content: 69.27

Gene sequence:

>885_bases
ATGGCCGGCCCTTTCGCCGCAGGAGCCTCCGTGCCAGACCGCCTCGCCGTTCTTCCGCAATACCTGCTGCCCAAGCGGGC
TCTCACCTCGCTGGCCGGCCGCTTCGCCTCTGCGCGCGCGGGCGCGCGCACGACGGCCGCGATCCGCCGCTTCGTGGCCC
GCTACCGCGTGGACATGTCCGAGGCCGAGAATCCGGACATCGGCAGCTACGCCACCTTCAACGATTTCTTCACGCGCGCC
CTGCGTGCCGGTGCGCGCCCCATCGCCGATGCCCCCGCCGTCTGCCCGGTGGATGGTGCGGTGAGCCAGTTCGGCCGCAT
TGAGAAAGACCAGATATTCCAGGCCAAGGGCCACCGCTACTCGACCACGGCACTGCTGGGCGGCGACGCGCGGGAGGCAT
CGAAATTCGACAACGGCAGCTTCGCCACCATTTACCTGAGCCCGCGCGACTACCACCGCATCCACATGCCCTGCGACGGC
CGGCTGCGCCGCATGGTCTATGTGCCGGGGGCCCTGTTTTCGGTGAATCCGCTCACCGCCCGTGGCGTGCCGGGACTGTT
CGCACGCAACGAACGGGTGGTCTGCCTGTTCGACACGCCGCTGGGCTCGATGGCGCTGGTGCTGGTGGGAGCCACCATCG
TGGGCAGCATGGCCACCGTCTGGCACGGCACGGTCAATCCGCCGCGCACGGCAGGCCTGCGCCAATGGAGTTACGAAGAC
GGGCCGGAAGTGCTTCTGCGCAAGGGGCAGGAAATGGGCCGGTTCATGCTGGGCTCGACGGTGGTGCTGCTTTTCGAGCC
CGGGGCGCTGCGCTTCACCGAAACCTGGGAGCCCGCGCGCGCCGTGCGGCTGGGCGAGCCCATGGGCCTGTTGCCTGCGG
CCTGA

Upstream 100 bases:

>100_bases
CTCCTGCCCGGCAGTAACGCCCCCGCAAGGAATGGAGCATGCCGCGCCGGCAGCGCCCTGCGGAAGGATACTGGCATTCG
GCCGGTGGACAGGGCCTAGA

Downstream 100 bases:

>100_bases
CGGGAGCGCCCTCCACCGCCCTGGACTATTGCGGATCAGGGCATGCGGCAGGTGGCGAACACGGTGGGCTGGAGTACCAG
CCTCTGGGGAGCCACAGGGG

Product: phosphatidylserine decarboxylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 294; Mature: 293

Protein sequence:

>294_residues
MAGPFAAGASVPDRLAVLPQYLLPKRALTSLAGRFASARAGARTTAAIRRFVARYRVDMSEAENPDIGSYATFNDFFTRA
LRAGARPIADAPAVCPVDGAVSQFGRIEKDQIFQAKGHRYSTTALLGGDAREASKFDNGSFATIYLSPRDYHRIHMPCDG
RLRRMVYVPGALFSVNPLTARGVPGLFARNERVVCLFDTPLGSMALVLVGATIVGSMATVWHGTVNPPRTAGLRQWSYED
GPEVLLRKGQEMGRFMLGSTVVLLFEPGALRFTETWEPARAVRLGEPMGLLPAA

Sequences:

>Translated_294_residues
MAGPFAAGASVPDRLAVLPQYLLPKRALTSLAGRFASARAGARTTAAIRRFVARYRVDMSEAENPDIGSYATFNDFFTRA
LRAGARPIADAPAVCPVDGAVSQFGRIEKDQIFQAKGHRYSTTALLGGDAREASKFDNGSFATIYLSPRDYHRIHMPCDG
RLRRMVYVPGALFSVNPLTARGVPGLFARNERVVCLFDTPLGSMALVLVGATIVGSMATVWHGTVNPPRTAGLRQWSYED
GPEVLLRKGQEMGRFMLGSTVVLLFEPGALRFTETWEPARAVRLGEPMGLLPAA
>Mature_293_residues
AGPFAAGASVPDRLAVLPQYLLPKRALTSLAGRFASARAGARTTAAIRRFVARYRVDMSEAENPDIGSYATFNDFFTRAL
RAGARPIADAPAVCPVDGAVSQFGRIEKDQIFQAKGHRYSTTALLGGDAREASKFDNGSFATIYLSPRDYHRIHMPCDGR
LRRMVYVPGALFSVNPLTARGVPGLFARNERVVCLFDTPLGSMALVLVGATIVGSMATVWHGTVNPPRTAGLRQWSYEDG
PEVLLRKGQEMGRFMLGSTVVLLFEPGALRFTETWEPARAVRLGEPMGLLPAA

Specific function: Unknown

COG id: COG0688

COG function: function code I; Phosphatidylserine decarboxylase

Gene ontology:

Cell location: Membrane-Associated [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphatidylserine decarboxylase family. Type 1 subfamily [H]

Homologues:

Organism=Homo sapiens, GI13489112, Length=272, Percent_Identity=33.8235294117647, Blast_Score=128, Evalue=5e-30,
Organism=Escherichia coli, GI1790604, Length=276, Percent_Identity=57.2463768115942, Blast_Score=323, Evalue=1e-89,
Organism=Caenorhabditis elegans, GI71980843, Length=242, Percent_Identity=33.4710743801653, Blast_Score=124, Evalue=7e-29,
Organism=Caenorhabditis elegans, GI71980840, Length=242, Percent_Identity=33.4710743801653, Blast_Score=123, Evalue=1e-28,
Organism=Saccharomyces cerevisiae, GI6321609, Length=244, Percent_Identity=27.8688524590164, Blast_Score=107, Evalue=3e-24,
Organism=Saccharomyces cerevisiae, GI6324160, Length=163, Percent_Identity=38.6503067484663, Blast_Score=93, Evalue=4e-20,
Organism=Drosophila melanogaster, GI24649526, Length=268, Percent_Identity=33.955223880597, Blast_Score=116, Evalue=1e-26,
Organism=Drosophila melanogaster, GI24649528, Length=268, Percent_Identity=33.955223880597, Blast_Score=116, Evalue=1e-26,
Organism=Drosophila melanogaster, GI24649524, Length=268, Percent_Identity=33.955223880597, Blast_Score=116, Evalue=1e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003817
- InterPro:   IPR005221 [H]

Pfam domain/function: PF02666 PS_Dcarbxylase [H]

EC number: =4.1.1.65 [H]

Molecular weight: Translated: 31861; Mature: 31730

Theoretical pI: Translated: 10.27; Mature: 10.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGPFAAGASVPDRLAVLPQYLLPKRALTSLAGRFASARAGARTTAAIRRFVARYRVDMS
CCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHH
EAENPDIGSYATFNDFFTRALRAGARPIADAPAVCPVDGAVSQFGRIEKDQIFQAKGHRY
HCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHCCCEE
STTALLGGDAREASKFDNGSFATIYLSPRDYHRIHMPCDGRLRRMVYVPGALFSVNPLTA
EEEEEECCCCHHHHCCCCCCEEEEEECCCCCEEEECCCCCCEEEEEEECCCEEECCCCCC
RGVPGLFARNERVVCLFDTPLGSMALVLVGATIVGSMATVWHGTVNPPRTAGLRQWSYED
CCCCCCEECCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
GPEVLLRKGQEMGRFMLGSTVVLLFEPGALRFTETWEPARAVRLGEPMGLLPAA
CHHHHHHCCHHHHHHHHCCEEEEEECCCCEEEECCCCCHHHHCCCCCCCCCCCC
>Mature Secondary Structure 
AGPFAAGASVPDRLAVLPQYLLPKRALTSLAGRFASARAGARTTAAIRRFVARYRVDMS
CCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHH
EAENPDIGSYATFNDFFTRALRAGARPIADAPAVCPVDGAVSQFGRIEKDQIFQAKGHRY
HCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHCCCEE
STTALLGGDAREASKFDNGSFATIYLSPRDYHRIHMPCDGRLRRMVYVPGALFSVNPLTA
EEEEEECCCCHHHHCCCCCCEEEEEECCCCCEEEECCCCCCEEEEEEECCCEEECCCCCC
RGVPGLFARNERVVCLFDTPLGSMALVLVGATIVGSMATVWHGTVNPPRTAGLRQWSYED
CCCCCCEECCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
GPEVLLRKGQEMGRFMLGSTVVLLFEPGALRFTETWEPARAVRLGEPMGLLPAA
CHHHHHHCCHHHHHHHHCCEEEEEECCCCEEEECCCCCHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA