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The map label for this gene is yiaM [C]

Identifier: 120611460

GI number: 120611460

Start: 3070146

End: 3070652

Strand: Reverse

Name: yiaM [C]

Synonym: Aave_2796

Alternate gene names: 120611460

Gene position: 3070652-3070146 (Counterclockwise)

Preceding gene: 120611461

Following gene: 120611459

Centisome position: 57.37

GC content: 69.63

Gene sequence:

>507_bases
ATGAACGACCACCCCGCGCGCGACAAACCCGCGCTCCAGCGCTTCGCGGAGCATTTCATGGTGCTGGCCCTGGCCGGCAT
GGTCGTGGCCGTGTTCGTGAACGTGGTGCTGCGCTATGCGTTCGGCACGAGCATCGTGTCGTACGAAGAGATCTCGCGCC
TGCTGTTCGTCTGGCTGGTGGCCGTGGGCGCCATCGTGGCCGCGTTCGAGGGCAAGCACCTGGGTTTCGACATGCTCACC
ACGCGCCTTTCGGGTGCGCCGCGCAAGGCGCTGTTCTGGGTGAGCCAGACCCTCGTGGCGCTCTGCATGGTGCTGCTGCT
CAAGGGATCGTGGGCGCAGGTGGTGGCCGGCATGGAGAGCTACAGCACCGTGCTGGGCTACCCGCTCGCGCTCGGCGCGG
CGGCCACGCTGGTGCTGGCGGCGGGCCTGCTCGCGGCACTGGTGCTGGATCTGGTGCGCGGCCGGCCGGCCGGCGAGGAT
GCGGGCGGCGACGCCACCATCGAGTGA

Upstream 100 bases:

>100_bases
TCGCGCATTGGCTGCACGGCGACGGCGGCGCAGAGGCTGCCGCGCCATTCCCCCACGCCCCAGGCGCCCCTTGCGCGCCG
GCCCCTTCCGGAGACACCGC

Downstream 100 bases:

>100_bases
AGGAGCGGCCATGGTCGTGACCCTGATTTTTCTCGGCGTGCTGATCGGCGGCATGGCCATCGGCATGCCGATCGCCCAGT
CGCTGATCCTCACCGGCGTC

Product: tripartite ATP-independent periplasmic transporter DctQ

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 168; Mature: 168

Protein sequence:

>168_residues
MNDHPARDKPALQRFAEHFMVLALAGMVVAVFVNVVLRYAFGTSIVSYEEISRLLFVWLVAVGAIVAAFEGKHLGFDMLT
TRLSGAPRKALFWVSQTLVALCMVLLLKGSWAQVVAGMESYSTVLGYPLALGAAATLVLAAGLLAALVLDLVRGRPAGED
AGGDATIE

Sequences:

>Translated_168_residues
MNDHPARDKPALQRFAEHFMVLALAGMVVAVFVNVVLRYAFGTSIVSYEEISRLLFVWLVAVGAIVAAFEGKHLGFDMLT
TRLSGAPRKALFWVSQTLVALCMVLLLKGSWAQVVAGMESYSTVLGYPLALGAAATLVLAAGLLAALVLDLVRGRPAGED
AGGDATIE
>Mature_168_residues
MNDHPARDKPALQRFAEHFMVLALAGMVVAVFVNVVLRYAFGTSIVSYEEISRLLFVWLVAVGAIVAAFEGKHLGFDMLT
TRLSGAPRKALFWVSQTLVALCMVLLLKGSWAQVVAGMESYSTVLGYPLALGAAATLVLAAGLLAALVLDLVRGRPAGED
AGGDATIE

Specific function: Unknown

COG id: COG3090

COG function: function code G; TRAP-type C4-dicarboxylate transport system, small permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the TRAP transporter small permease family [H]

Homologues:

Organism=Escherichia coli, GI1790002, Length=126, Percent_Identity=35.7142857142857, Blast_Score=80, Evalue=5e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007387 [H]

Pfam domain/function: PF04290 DctQ [H]

EC number: NA

Molecular weight: Translated: 17819; Mature: 17819

Theoretical pI: Translated: 6.79; Mature: 6.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNDHPARDKPALQRFAEHFMVLALAGMVVAVFVNVVLRYAFGTSIVSYEEISRLLFVWLV
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AVGAIVAAFEGKHLGFDMLTTRLSGAPRKALFWVSQTLVALCMVLLLKGSWAQVVAGMES
HHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
YSTVLGYPLALGAAATLVLAAGLLAALVLDLVRGRPAGEDAGGDATIE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MNDHPARDKPALQRFAEHFMVLALAGMVVAVFVNVVLRYAFGTSIVSYEEISRLLFVWLV
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AVGAIVAAFEGKHLGFDMLTTRLSGAPRKALFWVSQTLVALCMVLLLKGSWAQVVAGMES
HHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
YSTVLGYPLALGAAATLVLAAGLLAALVLDLVRGRPAGEDAGGDATIE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]