Definition Acidovorax citrulli AAC00-1 chromosome, complete genome.
Accession NC_008752
Length 5,352,772

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The map label for this gene is rbpE [H]

Identifier: 120610816

GI number: 120610816

Start: 2353905

End: 2354255

Strand: Reverse

Name: rbpE [H]

Synonym: Aave_2141

Alternate gene names: 120610816

Gene position: 2354255-2353905 (Counterclockwise)

Preceding gene: 120610817

Following gene: 120610814

Centisome position: 43.98

GC content: 62.96

Gene sequence:

>351_bases
ATGAGCTGCAAAATCTATGTGGGCAACCTGCCCTATTCCGTGACCGATGAAAGCCTGCGCAGCAATTTCGCGGAATTCGG
CGGCGTCACTTCGTCCAAGATCATGACGGACCGCGAAACCGGTCGCTCCAAGGGTTTCGGTTTCGTGGAAATGTCCTCGG
CCGAAGACGCGCAGTCGGCGATCACCGGCCTGAACGGCCTGTCCGTCGATGGACGCTCCATCGTCGTCAACCTGGCCCGC
CCGCGTGAGGCAAACGGCGGCCCGGGTGGCTACAGCCCGGTGGGCTACGCGGTGAACAAGCGCTCCGACGTGGGCTATGG
CAATGACGGCTACGGCGGCGGCCGTTACTGA

Upstream 100 bases:

>100_bases
CGCCCTCTCGCCCTGACGGTCGAGGGATCATCGCCCGGCTCGCCAGGCTCGACATTCCACCTGCGGGCTCCTCGTCCGCC
CTCTTTCAGAAAGGCTCCTC

Downstream 100 bases:

>100_bases
GCCCTCCCGCTTTTTCGCGGAAGAACCGGCTTCATTGAGCCGGTTTTTTTTCGTGCGGGGCCGTCCACCATCCCGGCCCA
CAGGCTCAACCAGAGCGGCG

Product: RNP-1-like RNA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 116; Mature: 115

Protein sequence:

>116_residues
MSCKIYVGNLPYSVTDESLRSNFAEFGGVTSSKIMTDRETGRSKGFGFVEMSSAEDAQSAITGLNGLSVDGRSIVVNLAR
PREANGGPGGYSPVGYAVNKRSDVGYGNDGYGGGRY

Sequences:

>Translated_116_residues
MSCKIYVGNLPYSVTDESLRSNFAEFGGVTSSKIMTDRETGRSKGFGFVEMSSAEDAQSAITGLNGLSVDGRSIVVNLAR
PREANGGPGGYSPVGYAVNKRSDVGYGNDGYGGGRY
>Mature_115_residues
SCKIYVGNLPYSVTDESLRSNFAEFGGVTSSKIMTDRETGRSKGFGFVEMSSAEDAQSAITGLNGLSVDGRSIVVNLARP
REANGGPGGYSPVGYAVNKRSDVGYGNDGYGGGRY

Specific function: Unknown

COG id: COG0724

COG function: function code R; RNA-binding proteins (RRM domain)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 RRM (RNA recognition motif) domain [H]

Homologues:

Organism=Homo sapiens, GI289547743, Length=83, Percent_Identity=38.5542168674699, Blast_Score=74, Evalue=2e-14,
Organism=Homo sapiens, GI34577107, Length=88, Percent_Identity=44.3181818181818, Blast_Score=74, Evalue=3e-14,
Organism=Homo sapiens, GI289547605, Length=83, Percent_Identity=39.7590361445783, Blast_Score=74, Evalue=3e-14,
Organism=Homo sapiens, GI221139802, Length=89, Percent_Identity=43.8202247191011, Blast_Score=73, Evalue=4e-14,
Organism=Homo sapiens, GI4557493, Length=73, Percent_Identity=45.2054794520548, Blast_Score=73, Evalue=5e-14,
Organism=Homo sapiens, GI34577105, Length=88, Percent_Identity=44.3181818181818, Blast_Score=73, Evalue=5e-14,
Organism=Homo sapiens, GI71164894, Length=83, Percent_Identity=39.7590361445783, Blast_Score=73, Evalue=5e-14,
Organism=Homo sapiens, GI14149675, Length=73, Percent_Identity=45.2054794520548, Blast_Score=73, Evalue=6e-14,
Organism=Homo sapiens, GI289547602, Length=83, Percent_Identity=39.7590361445783, Blast_Score=72, Evalue=9e-14,
Organism=Homo sapiens, GI4502847, Length=76, Percent_Identity=42.1052631578947, Blast_Score=72, Evalue=1e-13,
Organism=Homo sapiens, GI208431836, Length=79, Percent_Identity=46.8354430379747, Blast_Score=71, Evalue=2e-13,
Organism=Homo sapiens, GI4504715, Length=79, Percent_Identity=46.8354430379747, Blast_Score=70, Evalue=3e-13,
Organism=Homo sapiens, GI4757926, Length=73, Percent_Identity=43.8356164383562, Blast_Score=70, Evalue=3e-13,
Organism=Homo sapiens, GI5174637, Length=83, Percent_Identity=43.3734939759036, Blast_Score=70, Evalue=3e-13,
Organism=Homo sapiens, GI208431833, Length=79, Percent_Identity=46.8354430379747, Blast_Score=70, Evalue=3e-13,
Organism=Homo sapiens, GI35493811, Length=73, Percent_Identity=43.8356164383562, Blast_Score=70, Evalue=3e-13,
Organism=Homo sapiens, GI45439316, Length=83, Percent_Identity=43.3734939759036, Blast_Score=70, Evalue=3e-13,
Organism=Homo sapiens, GI303305009, Length=83, Percent_Identity=43.3734939759036, Blast_Score=70, Evalue=3e-13,
Organism=Homo sapiens, GI46367787, Length=79, Percent_Identity=48.1012658227848, Blast_Score=70, Evalue=4e-13,
Organism=Homo sapiens, GI185135971, Length=79, Percent_Identity=46.8354430379747, Blast_Score=69, Evalue=6e-13,
Organism=Homo sapiens, GI45238849, Length=79, Percent_Identity=48.1012658227848, Blast_Score=69, Evalue=8e-13,
Organism=Homo sapiens, GI5803137, Length=76, Percent_Identity=39.4736842105263, Blast_Score=69, Evalue=9e-13,
Organism=Homo sapiens, GI14043070, Length=91, Percent_Identity=38.4615384615385, Blast_Score=68, Evalue=2e-12,
Organism=Homo sapiens, GI38201714, Length=77, Percent_Identity=42.8571428571429, Blast_Score=67, Evalue=2e-12,
Organism=Homo sapiens, GI58761498, Length=91, Percent_Identity=38.4615384615385, Blast_Score=67, Evalue=2e-12,
Organism=Homo sapiens, GI58761496, Length=91, Percent_Identity=38.4615384615385, Blast_Score=67, Evalue=2e-12,
Organism=Homo sapiens, GI4504445, Length=91, Percent_Identity=38.4615384615385, Blast_Score=67, Evalue=2e-12,
Organism=Homo sapiens, GI70780381, Length=83, Percent_Identity=38.5542168674699, Blast_Score=67, Evalue=4e-12,
Organism=Homo sapiens, GI289547741, Length=83, Percent_Identity=38.5542168674699, Blast_Score=66, Evalue=5e-12,
Organism=Homo sapiens, GI115511032, Length=80, Percent_Identity=41.25, Blast_Score=66, Evalue=6e-12,
Organism=Homo sapiens, GI116734694, Length=73, Percent_Identity=41.0958904109589, Blast_Score=66, Evalue=7e-12,
Organism=Homo sapiens, GI116734696, Length=73, Percent_Identity=41.0958904109589, Blast_Score=66, Evalue=7e-12,
Organism=Homo sapiens, GI283945537, Length=80, Percent_Identity=41.25, Blast_Score=66, Evalue=7e-12,
Organism=Homo sapiens, GI283945529, Length=80, Percent_Identity=41.25, Blast_Score=66, Evalue=7e-12,
Organism=Homo sapiens, GI116734698, Length=73, Percent_Identity=41.0958904109589, Blast_Score=65, Evalue=8e-12,
Organism=Homo sapiens, GI221316771, Length=80, Percent_Identity=41.25, Blast_Score=65, Evalue=9e-12,
Organism=Homo sapiens, GI221316767, Length=80, Percent_Identity=41.25, Blast_Score=65, Evalue=9e-12,
Organism=Homo sapiens, GI221316765, Length=80, Percent_Identity=41.25, Blast_Score=65, Evalue=9e-12,
Organism=Homo sapiens, GI221316769, Length=80, Percent_Identity=41.25, Blast_Score=65, Evalue=9e-12,
Organism=Homo sapiens, GI221316773, Length=80, Percent_Identity=41.25, Blast_Score=65, Evalue=9e-12,
Organism=Homo sapiens, GI24762232, Length=81, Percent_Identity=37.037037037037, Blast_Score=65, Evalue=1e-11,
Organism=Homo sapiens, GI291084655, Length=77, Percent_Identity=40.2597402597403, Blast_Score=65, Evalue=2e-11,
Organism=Homo sapiens, GI14043072, Length=91, Percent_Identity=36.2637362637363, Blast_Score=64, Evalue=2e-11,
Organism=Homo sapiens, GI4504447, Length=91, Percent_Identity=36.2637362637363, Blast_Score=64, Evalue=2e-11,
Organism=Homo sapiens, GI77695912, Length=75, Percent_Identity=38.6666666666667, Blast_Score=64, Evalue=3e-11,
Organism=Homo sapiens, GI49355761, Length=81, Percent_Identity=39.5061728395062, Blast_Score=64, Evalue=3e-11,
Organism=Homo sapiens, GI49355765, Length=81, Percent_Identity=39.5061728395062, Blast_Score=64, Evalue=3e-11,
Organism=Homo sapiens, GI153252068, Length=76, Percent_Identity=36.8421052631579, Blast_Score=64, Evalue=3e-11,
Organism=Homo sapiens, GI34740329, Length=91, Percent_Identity=37.3626373626374, Blast_Score=63, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI17508587, Length=78, Percent_Identity=43.5897435897436, Blast_Score=76, Evalue=4e-15,
Organism=Caenorhabditis elegans, GI17508567, Length=75, Percent_Identity=48, Blast_Score=75, Evalue=5e-15,
Organism=Caenorhabditis elegans, GI17508585, Length=75, Percent_Identity=42.6666666666667, Blast_Score=72, Evalue=6e-14,
Organism=Caenorhabditis elegans, GI17553656, Length=75, Percent_Identity=42.6666666666667, Blast_Score=70, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI71980775, Length=80, Percent_Identity=38.75, Blast_Score=70, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17567131, Length=79, Percent_Identity=41.7721518987342, Blast_Score=69, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17569937, Length=86, Percent_Identity=40.6976744186046, Blast_Score=69, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI212648574, Length=86, Percent_Identity=40.6976744186046, Blast_Score=69, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI193209459, Length=75, Percent_Identity=38.6666666666667, Blast_Score=68, Evalue=7e-13,
Organism=Caenorhabditis elegans, GI17539498, Length=81, Percent_Identity=43.2098765432099, Blast_Score=68, Evalue=9e-13,
Organism=Caenorhabditis elegans, GI17567133, Length=79, Percent_Identity=41.7721518987342, Blast_Score=67, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI71993209, Length=79, Percent_Identity=44.3037974683544, Blast_Score=67, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI71993217, Length=79, Percent_Identity=44.3037974683544, Blast_Score=67, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI71993203, Length=79, Percent_Identity=44.3037974683544, Blast_Score=67, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17532863, Length=77, Percent_Identity=38.961038961039, Blast_Score=62, Evalue=6e-11,
Organism=Saccharomyces cerevisiae, GI6324312, Length=79, Percent_Identity=39.2405063291139, Blast_Score=67, Evalue=5e-13,
Organism=Saccharomyces cerevisiae, GI6321599, Length=81, Percent_Identity=35.8024691358025, Blast_Score=63, Evalue=1e-11,
Organism=Saccharomyces cerevisiae, GI6321013, Length=79, Percent_Identity=44.3037974683544, Blast_Score=62, Evalue=2e-11,
Organism=Drosophila melanogaster, GI17137710, Length=75, Percent_Identity=46.6666666666667, Blast_Score=76, Evalue=3e-15,
Organism=Drosophila melanogaster, GI24654797, Length=79, Percent_Identity=46.8354430379747, Blast_Score=71, Evalue=1e-13,
Organism=Drosophila melanogaster, GI45552715, Length=79, Percent_Identity=46.8354430379747, Blast_Score=71, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24654810, Length=79, Percent_Identity=46.8354430379747, Blast_Score=71, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24654800, Length=79, Percent_Identity=46.8354430379747, Blast_Score=71, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24654793, Length=79, Percent_Identity=46.8354430379747, Blast_Score=71, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24654807, Length=79, Percent_Identity=46.8354430379747, Blast_Score=71, Evalue=1e-13,
Organism=Drosophila melanogaster, GI17136378, Length=79, Percent_Identity=46.8354430379747, Blast_Score=71, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24654804, Length=79, Percent_Identity=46.8354430379747, Blast_Score=71, Evalue=1e-13,
Organism=Drosophila melanogaster, GI221330653, Length=77, Percent_Identity=42.8571428571429, Blast_Score=71, Evalue=1e-13,
Organism=Drosophila melanogaster, GI221330652, Length=77, Percent_Identity=42.8571428571429, Blast_Score=71, Evalue=1e-13,
Organism=Drosophila melanogaster, GI62471589, Length=77, Percent_Identity=42.8571428571429, Blast_Score=71, Evalue=1e-13,
Organism=Drosophila melanogaster, GI19549692, Length=77, Percent_Identity=42.8571428571429, Blast_Score=71, Evalue=1e-13,
Organism=Drosophila melanogaster, GI19549688, Length=77, Percent_Identity=42.8571428571429, Blast_Score=71, Evalue=1e-13,
Organism=Drosophila melanogaster, GI19549690, Length=77, Percent_Identity=42.8571428571429, Blast_Score=71, Evalue=1e-13,
Organism=Drosophila melanogaster, GI19549694, Length=77, Percent_Identity=42.8571428571429, Blast_Score=71, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24583879, Length=82, Percent_Identity=37.8048780487805, Blast_Score=70, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24583873, Length=82, Percent_Identity=37.8048780487805, Blast_Score=70, Evalue=3e-13,
Organism=Drosophila melanogaster, GI24582417, Length=73, Percent_Identity=41.0958904109589, Blast_Score=69, Evalue=5e-13,
Organism=Drosophila melanogaster, GI45550943, Length=73, Percent_Identity=41.0958904109589, Blast_Score=69, Evalue=5e-13,
Organism=Drosophila melanogaster, GI24582419, Length=73, Percent_Identity=41.0958904109589, Blast_Score=69, Evalue=5e-13,
Organism=Drosophila melanogaster, GI24582423, Length=73, Percent_Identity=41.0958904109589, Blast_Score=69, Evalue=5e-13,
Organism=Drosophila melanogaster, GI24582421, Length=73, Percent_Identity=41.0958904109589, Blast_Score=69, Evalue=5e-13,
Organism=Drosophila melanogaster, GI281364913, Length=82, Percent_Identity=37.8048780487805, Blast_Score=69, Evalue=6e-13,
Organism=Drosophila melanogaster, GI24583877, Length=82, Percent_Identity=37.8048780487805, Blast_Score=69, Evalue=6e-13,
Organism=Drosophila melanogaster, GI24663908, Length=83, Percent_Identity=38.5542168674699, Blast_Score=69, Evalue=7e-13,
Organism=Drosophila melanogaster, GI24583875, Length=82, Percent_Identity=37.8048780487805, Blast_Score=69, Evalue=8e-13,
Organism=Drosophila melanogaster, GI28574919, Length=83, Percent_Identity=38.5542168674699, Blast_Score=67, Evalue=2e-12,
Organism=Drosophila melanogaster, GI19920866, Length=73, Percent_Identity=41.0958904109589, Blast_Score=67, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24582412, Length=73, Percent_Identity=41.0958904109589, Blast_Score=67, Evalue=2e-12,
Organism=Drosophila melanogaster, GI17647301, Length=77, Percent_Identity=41.5584415584416, Blast_Score=66, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012677
- InterPro:   IPR000504
- InterPro:   IPR015465 [H]

Pfam domain/function: PF00076 RRM_1 [H]

EC number: NA

Molecular weight: Translated: 12162; Mature: 12030

Theoretical pI: Translated: 6.62; Mature: 6.62

Prosite motif: PS50102 RRM

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure: 

>Translated Secondary Structure
MSCKIYVGNLPYSVTDESLRSNFAEFGGVTSSKIMTDRETGRSKGFGFVEMSSAEDAQSA
CCEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCEEEECCCCHHHHH
ITGLNGLSVDGRSIVVNLARPREANGGPGGYSPVGYAVNKRSDVGYGNDGYGGGRY
HHCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SCKIYVGNLPYSVTDESLRSNFAEFGGVTSSKIMTDRETGRSKGFGFVEMSSAEDAQSA
CEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCEEEECCCCHHHHH
ITGLNGLSVDGRSIVVNLARPREANGGPGGYSPVGYAVNKRSDVGYGNDGYGGGRY
HHCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11759840 [H]