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The map label for this gene is ykgD [C]

Identifier: 120610646

GI number: 120610646

Start: 2136086

End: 2137075

Strand: Reverse

Name: ykgD [C]

Synonym: Aave_1966

Alternate gene names: 120610646

Gene position: 2137075-2136086 (Counterclockwise)

Preceding gene: 120610647

Following gene: 120610645

Centisome position: 39.92

GC content: 73.43

Gene sequence:

>990_bases
ATGAACGGCGACCGGCCCGGCCCGATCCACGTCGTCTTCGCCTTGCTGCCCCACAGCCTGGTACTGGACTGGGCCGGCCC
GGCGGAAGCGCTGCGCATCGCCAACCAGTGCCTGCACGCGCAGGGGCTGCCCGAGCGTTTCGTGCTGCGCTTCGCGAGCC
CCACGCCGCAATCGGTGACTTCGGTCGGCGCTGTGCTCAGCGGACTGGAGCCCCTGCCCACGGCATGGCCTGCCGCCGCC
TGGGTGGTTCTGATCGGCCTGCCCGGCGCGGCGATCGACGTGGCGACCGCAGAGGCCCGCGCGCTGCTGCACTGGCTGCG
CGGCCTGCGGCCGGAACGGAGACGGCTCGAACTGCTGACCATCTGCGCGGGCTCGGTGCTCGCGGCCCATGCCGGGCTGC
TCGCGGGCCGTCGCGCCACCACGCACCACCAGCACCTCGCGGAGCTGCAGCAGGTGGAACCGCGCTGCGACGTGGTGGCC
AACCGGGTCTTCGTGCCGGATGCCCCGCTCTACAGCAGCGCGGGCGTCACCACCGGCATCGATCTCGTGCTGCACCGCAT
CGCGGACGAATGCGGCCCGGCCATCGCCGCGCAGGTGGCTCAGACCATGGTGGTGGCGTTGCGGCGCGGCCCCCACGACC
CGGAGTTCTCGCCGTTTCTCGCCCACCGCAACCACCTGCACCCGGCGCTCCACCGCGTGCAGGACGCGGTGTCGCAGCAC
CCGGCCGGAGACTGGAGCGTTCCGGCCATGGCCGAGGTCGCGCATGCATCGCCCCGCCATCTCACCCGCCTGTTCATCGA
CCATGCGGGCATCGCCCCCCTGGCCTGGCTGCGCACCATCCGGCTGGCCACGGCCGAGGCGGCACTGAACACCGGCCACA
CGGTGACGCAGGCCGCGGCCCTGGCCGGCTTCAGTTCGGACACTCAGCTGCGCCGGGCATGGCACCGGTTCGGGCGCGGC
GGTACGCCGTCGGAGCCGGCCCGCGCCTGA

Upstream 100 bases:

>100_bases
TGCACCTGGTGGAACGCCTTGCCGGCCGCGCGCTCGCCGGACGCACGGCCCGCCAGATGGACACGCCCTGGCATCCCGAT
CCTCAAGGGGTATCGCACGC

Downstream 100 bases:

>100_bases
GCGCGCTGTTCCGGAACGCCGCGTGCGCAAGCACACGCCATCGGTGGATGCTGCCCTTCAGCCCAAGATTGGTACGGCCG
TCAAGCGCGTTCTGAAAGCC

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator; Transcriptional Regulator AraC Family; AraC Family Transcription Regulator; Transcriptional Regulator AraC Family Protein; ThiJ/PfpI Domain-Containing Protein; Transcription Regulator; AraC-Family Transcriptional Regulator; Transcriptional Regulator Protein; Transcriptional Regulator DarR; AraC Family Regulatory Helix-Turn-Helix Protein; DJ-1/PfpI Family; AraC Family Regulatory Helix-Turn-Helix; Transcriptional Regulator AraC-Family Protein; Transcriptional Regulator Arac Family; Helix-Turn-Helix AraC Type; Transcriptional Regulator Protein AraC Family; ADPA-Family Transcriptional Regulator; ADPA Family Transcriptional Regulator; Transcriptional Regulator AraC Type; AraC Family Regulatory Protein; Transcriptional Regulatory Protein; HTH-Type Transcriptional Regulator GlxA; AraC Family Transcription Regulator Protein; Regulatory Protein; Fis Family Transcriptional Regulator

Number of amino acids: Translated: 329; Mature: 329

Protein sequence:

>329_residues
MNGDRPGPIHVVFALLPHSLVLDWAGPAEALRIANQCLHAQGLPERFVLRFASPTPQSVTSVGAVLSGLEPLPTAWPAAA
WVVLIGLPGAAIDVATAEARALLHWLRGLRPERRRLELLTICAGSVLAAHAGLLAGRRATTHHQHLAELQQVEPRCDVVA
NRVFVPDAPLYSSAGVTTGIDLVLHRIADECGPAIAAQVAQTMVVALRRGPHDPEFSPFLAHRNHLHPALHRVQDAVSQH
PAGDWSVPAMAEVAHASPRHLTRLFIDHAGIAPLAWLRTIRLATAEAALNTGHTVTQAAALAGFSSDTQLRRAWHRFGRG
GTPSEPARA

Sequences:

>Translated_329_residues
MNGDRPGPIHVVFALLPHSLVLDWAGPAEALRIANQCLHAQGLPERFVLRFASPTPQSVTSVGAVLSGLEPLPTAWPAAA
WVVLIGLPGAAIDVATAEARALLHWLRGLRPERRRLELLTICAGSVLAAHAGLLAGRRATTHHQHLAELQQVEPRCDVVA
NRVFVPDAPLYSSAGVTTGIDLVLHRIADECGPAIAAQVAQTMVVALRRGPHDPEFSPFLAHRNHLHPALHRVQDAVSQH
PAGDWSVPAMAEVAHASPRHLTRLFIDHAGIAPLAWLRTIRLATAEAALNTGHTVTQAAALAGFSSDTQLRRAWHRFGRG
GTPSEPARA
>Mature_329_residues
MNGDRPGPIHVVFALLPHSLVLDWAGPAEALRIANQCLHAQGLPERFVLRFASPTPQSVTSVGAVLSGLEPLPTAWPAAA
WVVLIGLPGAAIDVATAEARALLHWLRGLRPERRRLELLTICAGSVLAAHAGLLAGRRATTHHQHLAELQQVEPRCDVVA
NRVFVPDAPLYSSAGVTTGIDLVLHRIADECGPAIAAQVAQTMVVALRRGPHDPEFSPFLAHRNHLHPALHRVQDAVSQH
PAGDWSVPAMAEVAHASPRHLTRLFIDHAGIAPLAWLRTIRLATAEAALNTGHTVTQAAALAGFSSDTQLRRAWHRFGRG
GTPSEPARA

Specific function: Unknown

COG id: COG4977

COG function: function code K; Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 35192; Mature: 35192

Theoretical pI: Translated: 8.72; Mature: 8.72

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNGDRPGPIHVVFALLPHSLVLDWAGPAEALRIANQCLHAQGLPERFVLRFASPTPQSVT
CCCCCCCHHHHHHHHHHHHHEEECCCHHHHHHHHHHHHHHCCCCHHHHHEECCCCCHHHH
SVGAVLSGLEPLPTAWPAAAWVVLIGLPGAAIDVATAEARALLHWLRGLRPERRRLELLT
HHHHHHHCCCCCCCCHHHHHHHHHEECCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
ICAGSVLAAHAGLLAGRRATTHHQHLAELQQVEPRCDVVANRVFVPDAPLYSSAGVTTGI
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHCCEECCCCCCCCCCCCHHHH
DLVLHRIADECGPAIAAQVAQTMVVALRRGPHDPEFSPFLAHRNHLHPALHRVQDAVSQH
HHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHC
PAGDWSVPAMAEVAHASPRHLTRLFIDHAGIAPLAWLRTIRLATAEAALNTGHTVTQAAA
CCCCCCCCHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
LAGFSSDTQLRRAWHRFGRGGTPSEPARA
HHCCCCCHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MNGDRPGPIHVVFALLPHSLVLDWAGPAEALRIANQCLHAQGLPERFVLRFASPTPQSVT
CCCCCCCHHHHHHHHHHHHHEEECCCHHHHHHHHHHHHHHCCCCHHHHHEECCCCCHHHH
SVGAVLSGLEPLPTAWPAAAWVVLIGLPGAAIDVATAEARALLHWLRGLRPERRRLELLT
HHHHHHHCCCCCCCCHHHHHHHHHEECCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
ICAGSVLAAHAGLLAGRRATTHHQHLAELQQVEPRCDVVANRVFVPDAPLYSSAGVTTGI
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHCCEECCCCCCCCCCCCHHHH
DLVLHRIADECGPAIAAQVAQTMVVALRRGPHDPEFSPFLAHRNHLHPALHRVQDAVSQH
HHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHC
PAGDWSVPAMAEVAHASPRHLTRLFIDHAGIAPLAWLRTIRLATAEAALNTGHTVTQAAA
CCCCCCCCHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
LAGFSSDTQLRRAWHRFGRGGTPSEPARA
HHCCCCCHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA