| Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008752 |
| Length | 5,352,772 |
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The map label for this gene is yebQ [H]
Identifier: 120610548
GI number: 120610548
Start: 2025261
End: 2026652
Strand: Direct
Name: yebQ [H]
Synonym: Aave_1868
Alternate gene names: 120610548
Gene position: 2025261-2026652 (Clockwise)
Preceding gene: 120610547
Following gene: 120610553
Centisome position: 37.84
GC content: 72.7
Gene sequence:
>1392_bases ATGCTGGTGATCATCCTCGGCATCGCGGTCGCGGTGCTGGACGGCAGCATCATGAACCTCGCGCTGCCCACCATCGCCCG GGAACTGCAGGCCGGCGCGCCGCAGGCCATCTGGGTGGTGAACGCCTACCAGATCGCCACGCTCGGCATGCTGCTGCCGC TCGCCGCGCTCGGGGAGCGCATCGGCTACCGGCGGGTGTACCTGCTGGGCATGGGCCTGTTCGCGGTGTCGTCTCTGGGC GCCATGCTGGCGTCGTCGCTGGAGGTGCTGATCGCGGCGCGGGCCGTGCAGGGCCTGGGCGCGGCGGGCATCATGAGCGT GAACGCGGCGCTGGTGCGCATGATCTATCCGCGCGCGCGGCTCGGGCAGGGGCTGGCGCTCAATTCGCTGGTCGTCGCCG CATCGTCGGTGGCAGGGCCCTCGGTGGCGGCTGCCATCCTCTCGGTGTCGTCCTGGCCGATGTTGTTCGCGATCAACCTG CCGCTGGGGGTGGCGACGCTCTGGCTCGGCCGGCGCGCGCTGCCGTTCAATCCAAATCCACCGCCGCCATCGCAGGGGGC GAAGGCGGGCGCGCGGTTTTCCGTGATCGATGTGGCGCTCAACGTGCTGATGTTCGCGCTGGTGTTCATCGGCGGCGACC AGTTGGGCGTGCATGGCGGGGCGGGCGCGCTGCCGCTCGGCCCCGCGCTGACGCTGCTGGCGGGCCTGGCGGTGGGGGTG GTGTTCGTGCGCCGGCAGGTGCGCGCCGACCGCCGTGGCGAGACGCCGCTTTTCCCGGTGGATCTGCTGCGCATTCCGGT GTTCTCGCTGTCGATGGGGGCGTCAATCGCGGCCTTCTGCGCGCAGATGCTCGCGTTCCTGGCGCTGCCGTTCCTGCTGC TGGAGGCGCACGGCCGCTCGCATGCCGAGGCCGGTCTGCTCATCACGCCCTGGCCGCTGGCCATCGTGGCTGTCGCGCCG CTCGCAGGGCGCCTGATCGGCCGCGTGCCGGACGGCCTGCTGGGCGGCATCGGCATGGCCGTGCTGGCACTGGGGCTGGG GGCGCTGGCCGGGATGCCGCAGGATGCGGGCGCGTTCGGCGTGGTGTGGCGCATGGCGCTGTGCGGCGTGGGGTTCGCGC TGTTCCAGTCGCCCAACAACCACACGATCGTCACGTCCGCGCCGCTGCACCGCTCGGGGGCAGCGGGCGGCATGCTGAGC ACGGCCCGGCTCACGGGCCAGACGCTGGGCGCCGTGCTGCTCGCGGTGATCTTCGCGATCCAGGGCACGCACGGCGGCCA TGCCGAGGCCGTGGCGTTCTGGCTCGCTGCGGGCAGCGCGGCGGTGGCGGGCGTGTGCAGCGTGCTGCGGTTGGGGCCGG CAAGGGCTGCCAGGGTGGACTCGGGGCACTGA
Upstream 100 bases:
>100_bases CACGGCTTCCGGCGCGGGGCAGCGCAGTTCCGCGGAAGCCGCCGTGTCGCGGCCTGCAGGCGTGGCGGACGGACTGGAGC CGCCGGAGCGCGGGAGGGCG
Downstream 100 bases:
>100_bases CACCGCGCTGGCGCAACGCTCGGCGCGGGCGCTCGCGGCGGCCGCTGCCGCCCACCTTGTGGTCAGGCCTTGGAGCCGTC GTCGGATTCCGGGTCTGCGT
Product: major facilitator superfamily transporter
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 463; Mature: 463
Protein sequence:
>463_residues MLVIILGIAVAVLDGSIMNLALPTIARELQAGAPQAIWVVNAYQIATLGMLLPLAALGERIGYRRVYLLGMGLFAVSSLG AMLASSLEVLIAARAVQGLGAAGIMSVNAALVRMIYPRARLGQGLALNSLVVAASSVAGPSVAAAILSVSSWPMLFAINL PLGVATLWLGRRALPFNPNPPPPSQGAKAGARFSVIDVALNVLMFALVFIGGDQLGVHGGAGALPLGPALTLLAGLAVGV VFVRRQVRADRRGETPLFPVDLLRIPVFSLSMGASIAAFCAQMLAFLALPFLLLEAHGRSHAEAGLLITPWPLAIVAVAP LAGRLIGRVPDGLLGGIGMAVLALGLGALAGMPQDAGAFGVVWRMALCGVGFALFQSPNNHTIVTSAPLHRSGAAGGMLS TARLTGQTLGAVLLAVIFAIQGTHGGHAEAVAFWLAAGSAAVAGVCSVLRLGPARAARVDSGH
Sequences:
>Translated_463_residues MLVIILGIAVAVLDGSIMNLALPTIARELQAGAPQAIWVVNAYQIATLGMLLPLAALGERIGYRRVYLLGMGLFAVSSLG AMLASSLEVLIAARAVQGLGAAGIMSVNAALVRMIYPRARLGQGLALNSLVVAASSVAGPSVAAAILSVSSWPMLFAINL PLGVATLWLGRRALPFNPNPPPPSQGAKAGARFSVIDVALNVLMFALVFIGGDQLGVHGGAGALPLGPALTLLAGLAVGV VFVRRQVRADRRGETPLFPVDLLRIPVFSLSMGASIAAFCAQMLAFLALPFLLLEAHGRSHAEAGLLITPWPLAIVAVAP LAGRLIGRVPDGLLGGIGMAVLALGLGALAGMPQDAGAFGVVWRMALCGVGFALFQSPNNHTIVTSAPLHRSGAAGGMLS TARLTGQTLGAVLLAVIFAIQGTHGGHAEAVAFWLAAGSAAVAGVCSVLRLGPARAARVDSGH >Mature_463_residues MLVIILGIAVAVLDGSIMNLALPTIARELQAGAPQAIWVVNAYQIATLGMLLPLAALGERIGYRRVYLLGMGLFAVSSLG AMLASSLEVLIAARAVQGLGAAGIMSVNAALVRMIYPRARLGQGLALNSLVVAASSVAGPSVAAAILSVSSWPMLFAINL PLGVATLWLGRRALPFNPNPPPPSQGAKAGARFSVIDVALNVLMFALVFIGGDQLGVHGGAGALPLGPALTLLAGLAVGV VFVRRQVRADRRGETPLFPVDLLRIPVFSLSMGASIAAFCAQMLAFLALPFLLLEAHGRSHAEAGLLITPWPLAIVAVAP LAGRLIGRVPDGLLGGIGMAVLALGLGALAGMPQDAGAFGVVWRMALCGVGFALFQSPNNHTIVTSAPLHRSGAAGGMLS TARLTGQTLGAVLLAVIFAIQGTHGGHAEAVAFWLAAGSAAVAGVCSVLRLGPARAARVDSGH
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the major facilitator superfamily. TCR/tet family [H]
Homologues:
Organism=Escherichia coli, GI87081983, Length=435, Percent_Identity=49.8850574712644, Blast_Score=380, Evalue=1e-107, Organism=Escherichia coli, GI1788710, Length=330, Percent_Identity=27.8787878787879, Blast_Score=96, Evalue=4e-21, Organism=Escherichia coli, GI1789042, Length=437, Percent_Identity=25.4004576659039, Blast_Score=94, Evalue=2e-20, Organism=Escherichia coli, GI1790195, Length=319, Percent_Identity=27.2727272727273, Blast_Score=91, Evalue=2e-19, Organism=Escherichia coli, GI1788392, Length=332, Percent_Identity=27.710843373494, Blast_Score=72, Evalue=1e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020846 - InterPro: IPR011701 - InterPro: IPR016196 - InterPro: IPR001411 [H]
Pfam domain/function: PF07690 MFS_1 [H]
EC number: NA
Molecular weight: Translated: 47004; Mature: 47004
Theoretical pI: Translated: 11.65; Mature: 11.65
Prosite motif: PS50850 MFS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLVIILGIAVAVLDGSIMNLALPTIARELQAGAPQAIWVVNAYQIATLGMLLPLAALGER CEEEEEHHHHHHHCCHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHHHH IGYRRVYLLGMGLFAVSSLGAMLASSLEVLIAARAVQGLGAAGIMSVNAALVRMIYPRAR HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHH LGQGLALNSLVVAASSVAGPSVAAAILSVSSWPMLFAINLPLGVATLWLGRRALPFNPNP HCCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHCCCCCCCCCCC PPPSQGAKAGARFSVIDVALNVLMFALVFIGGDQLGVHGGAGALPLGPALTLLAGLAVGV CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCHHHHHHHHHHHHH VFVRRQVRADRRGETPLFPVDLLRIPVFSLSMGASIAAFCAQMLAFLALPFLLLEAHGRS HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCC HAEAGLLITPWPLAIVAVAPLAGRLIGRVPDGLLGGIGMAVLALGLGALAGMPQDAGAFG CCCCCEEECCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHH VVWRMALCGVGFALFQSPNNHTIVTSAPLHRSGAAGGMLSTARLTGQTLGAVLLAVIFAI HHHHHHHHHCCHHHHCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH QGTHGGHAEAVAFWLAAGSAAVAGVCSVLRLGPARAARVDSGH CCCCCCHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHCCCCCCC >Mature Secondary Structure MLVIILGIAVAVLDGSIMNLALPTIARELQAGAPQAIWVVNAYQIATLGMLLPLAALGER CEEEEEHHHHHHHCCHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHHHH IGYRRVYLLGMGLFAVSSLGAMLASSLEVLIAARAVQGLGAAGIMSVNAALVRMIYPRAR HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHH LGQGLALNSLVVAASSVAGPSVAAAILSVSSWPMLFAINLPLGVATLWLGRRALPFNPNP HCCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHCCCCCCCCCCC PPPSQGAKAGARFSVIDVALNVLMFALVFIGGDQLGVHGGAGALPLGPALTLLAGLAVGV CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCHHHHHHHHHHHHH VFVRRQVRADRRGETPLFPVDLLRIPVFSLSMGASIAAFCAQMLAFLALPFLLLEAHGRS HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCC HAEAGLLITPWPLAIVAVAPLAGRLIGRVPDGLLGGIGMAVLALGLGALAGMPQDAGAFG CCCCCEEECCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHH VVWRMALCGVGFALFQSPNNHTIVTSAPLHRSGAAGGMLSTARLTGQTLGAVLLAVIFAI HHHHHHHHHCCHHHHCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH QGTHGGHAEAVAFWLAAGSAAVAGVCSVLRLGPARAARVDSGH CCCCCCHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9097040; 9278503 [H]