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The map label for this gene is yfdE [H]

Identifier: 120610519

GI number: 120610519

Start: 1992857

End: 1993990

Strand: Reverse

Name: yfdE [H]

Synonym: Aave_1839

Alternate gene names: 120610519

Gene position: 1993990-1992857 (Counterclockwise)

Preceding gene: 120610520

Following gene: 120610502

Centisome position: 37.25

GC content: 71.08

Gene sequence:

>1134_bases
TTGACTGATACAGCAGGCACCGGCGCACTCGCCGGCATCCGGGTGCTCGATCTCTCGCGCATCCTCGGCGGGCCGTACTG
CGGCCAGATCCTGGGCGACCACGGTGCCGACGTGCTCAAGGTGGAGCCGCCCGAGGGCGACGATACGCGCACCTGGGGCC
CGCCGTTCCGGGGCGGCGTGGCGTCGTACTACATGGGACTGAACCGCAACAAGCGGGTGCAGCACCTCGATCTGTCGAGC
GAGGAAGGCCGGGCCCGCCTGCTCGAGCTGGCCGCACAGGCCGACGTGCTCGTGGAGAATTTCAAGTCCGGCACGATGGA
GCGCTGGGGCATCGGATATGGCGAGCTGTCGCGGCGTTTCCCGCGCCTGGTCTGGTGCCGCGTGAGCGGCTTCGGCAGCG
ACGGCCCGCTGGGCGGCCTGCCGGGCTACGACGCAGCGGTGCAGGCCATGGCCGGCATCATGAGCGTCAACGGCGAATCG
GGCGGCGGCGCGTTGCGCGTCGGCCTGCCGGTGGTGGACATGGTGACGGGGCTGCATGCCGTCATCGGCGTGCTGCTCGC
CCTGCAGGAGCGCCAGCGCAGCGGCCGGGGCCAGCTCGTGGAGGCGGCACTCTACGACAGCGGCCTCTCGCTGCTGCATC
CGCATGCGGCGAACTGGTTCATGGACGGACGCGTACCGGGCCGCAGCGGCAATGCCCACCCCAACATCTATCCGTACGAC
ACGCTGCGCACCGCCAGCGAGCCGGTCTTCGTCACGGTGGGCAACGACCGCCAGTTCGCGGCCTTCTGCCGCTGCATAGG
CCGTCCGGAACTGGCGGACGATCCGCGCTTCGCGCGGGCGGGGGACCGATCGCGCCACCGCTCGGAACTGAAACCGCTGC
TGGAGGACGCGACGCAGGCCCTGCAGGCCGCCCCGCTGGTCGAACGGCTGATGGCCGCGGGCGTGCCGGCGGCGCCCGTG
CTCCAAGTAGACGCGGCGCTGGAGCACCCGCACACCGCGCACCGGAAGATGGTGGTCGAAATGGGGGCGGATTACCGTGG
CCTGGGAAGCCCGGTGGCGTTGAGCCGGACCCCGGCCACCTACCGGCATCCGCCGCTCACGGCGGGAGATGCTTTCCTGC
CCCGCGATGCATAG

Upstream 100 bases:

>100_bases
CTGGAAGCCGCAGCCGATACACGCCCGCAGGCGCTGGGGCGCTTCATCGCCGACGAGACGGCCAAGTGGGCGCAGGTGGT
CCACCAGTCGGGAGTCCGCC

Downstream 100 bases:

>100_bases
CGCGTCGCCCGTGCCGCCAGCAGGATGACCGGCCTTACTCTGAGGAATCCGCGTGCGCCGCGCTCGCGTGCAGGCAGATG
GCCGCCGCCGCCCCCACGTT

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 377; Mature: 376

Protein sequence:

>377_residues
MTDTAGTGALAGIRVLDLSRILGGPYCGQILGDHGADVLKVEPPEGDDTRTWGPPFRGGVASYYMGLNRNKRVQHLDLSS
EEGRARLLELAAQADVLVENFKSGTMERWGIGYGELSRRFPRLVWCRVSGFGSDGPLGGLPGYDAAVQAMAGIMSVNGES
GGGALRVGLPVVDMVTGLHAVIGVLLALQERQRSGRGQLVEAALYDSGLSLLHPHAANWFMDGRVPGRSGNAHPNIYPYD
TLRTASEPVFVTVGNDRQFAAFCRCIGRPELADDPRFARAGDRSRHRSELKPLLEDATQALQAAPLVERLMAAGVPAAPV
LQVDAALEHPHTAHRKMVVEMGADYRGLGSPVALSRTPATYRHPPLTAGDAFLPRDA

Sequences:

>Translated_377_residues
MTDTAGTGALAGIRVLDLSRILGGPYCGQILGDHGADVLKVEPPEGDDTRTWGPPFRGGVASYYMGLNRNKRVQHLDLSS
EEGRARLLELAAQADVLVENFKSGTMERWGIGYGELSRRFPRLVWCRVSGFGSDGPLGGLPGYDAAVQAMAGIMSVNGES
GGGALRVGLPVVDMVTGLHAVIGVLLALQERQRSGRGQLVEAALYDSGLSLLHPHAANWFMDGRVPGRSGNAHPNIYPYD
TLRTASEPVFVTVGNDRQFAAFCRCIGRPELADDPRFARAGDRSRHRSELKPLLEDATQALQAAPLVERLMAAGVPAAPV
LQVDAALEHPHTAHRKMVVEMGADYRGLGSPVALSRTPATYRHPPLTAGDAFLPRDA
>Mature_376_residues
TDTAGTGALAGIRVLDLSRILGGPYCGQILGDHGADVLKVEPPEGDDTRTWGPPFRGGVASYYMGLNRNKRVQHLDLSSE
EGRARLLELAAQADVLVENFKSGTMERWGIGYGELSRRFPRLVWCRVSGFGSDGPLGGLPGYDAAVQAMAGIMSVNGESG
GGALRVGLPVVDMVTGLHAVIGVLLALQERQRSGRGQLVEAALYDSGLSLLHPHAANWFMDGRVPGRSGNAHPNIYPYDT
LRTASEPVFVTVGNDRQFAAFCRCIGRPELADDPRFARAGDRSRHRSELKPLLEDATQALQAAPLVERLMAAGVPAAPVL
QVDAALEHPHTAHRKMVVEMGADYRGLGSPVALSRTPATYRHPPLTAGDAFLPRDA

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=341, Percent_Identity=34.0175953079179, Blast_Score=241, Evalue=1e-63,
Organism=Homo sapiens, GI300863124, Length=333, Percent_Identity=33.9339339339339, Blast_Score=233, Evalue=2e-61,
Organism=Homo sapiens, GI300863126, Length=341, Percent_Identity=30.2052785923754, Blast_Score=192, Evalue=5e-49,
Organism=Homo sapiens, GI13376042, Length=333, Percent_Identity=29.7297297297297, Blast_Score=191, Evalue=1e-48,
Organism=Homo sapiens, GI42794625, Length=199, Percent_Identity=35.1758793969849, Blast_Score=108, Evalue=7e-24,
Organism=Homo sapiens, GI266456254, Length=199, Percent_Identity=35.1758793969849, Blast_Score=108, Evalue=9e-24,
Organism=Homo sapiens, GI266458397, Length=201, Percent_Identity=35.3233830845771, Blast_Score=107, Evalue=2e-23,
Organism=Homo sapiens, GI266458393, Length=201, Percent_Identity=35.3233830845771, Blast_Score=106, Evalue=3e-23,
Organism=Homo sapiens, GI266458395, Length=146, Percent_Identity=37.6712328767123, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI42822893, Length=144, Percent_Identity=37.5, Blast_Score=84, Evalue=3e-16,
Organism=Escherichia coli, GI87082093, Length=356, Percent_Identity=37.3595505617978, Blast_Score=253, Evalue=1e-68,
Organism=Escherichia coli, GI1788717, Length=396, Percent_Identity=28.5353535353535, Blast_Score=139, Evalue=2e-34,
Organism=Escherichia coli, GI1786222, Length=348, Percent_Identity=26.4367816091954, Blast_Score=85, Evalue=9e-18,
Organism=Caenorhabditis elegans, GI32564160, Length=217, Percent_Identity=26.7281105990783, Blast_Score=81, Evalue=9e-16,
Organism=Caenorhabditis elegans, GI115535051, Length=201, Percent_Identity=27.8606965174129, Blast_Score=78, Evalue=7e-15,
Organism=Drosophila melanogaster, GI24648431, Length=363, Percent_Identity=37.7410468319559, Blast_Score=232, Evalue=3e-61,
Organism=Drosophila melanogaster, GI24585488, Length=360, Percent_Identity=28.8888888888889, Blast_Score=110, Evalue=2e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 40325; Mature: 40194

Theoretical pI: Translated: 7.11; Mature: 7.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDTAGTGALAGIRVLDLSRILGGPYCGQILGDHGADVLKVEPPEGDDTRTWGPPFRGGV
CCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCH
ASYYMGLNRNKRVQHLDLSSEEGRARLLELAAQADVLVENFKSGTMERWGIGYGELSRRF
HHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCHHHHHHCC
PRLVWCRVSGFGSDGPLGGLPGYDAAVQAMAGIMSVNGESGGGALRVGLPVVDMVTGLHA
CEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHH
VIGVLLALQERQRSGRGQLVEAALYDSGLSLLHPHAANWFMDGRVPGRSGNAHPNIYPYD
HHHHHHHHHHHHHCCCCCEEHHHHHHCCCHHHCCCCCCEEECCCCCCCCCCCCCCCCCCH
TLRTASEPVFVTVGNDRQFAAFCRCIGRPELADDPRFARAGDRSRHRSELKPLLEDATQA
HHHCCCCCEEEEECCCCHHHHHHHHCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHH
LQAAPLVERLMAAGVPAAPVLQVDAALEHPHTAHRKMVVEMGADYRGLGSPVALSRTPAT
HHHHHHHHHHHHCCCCCCCCEEHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCEECCCCCC
YRHPPLTAGDAFLPRDA
CCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
TDTAGTGALAGIRVLDLSRILGGPYCGQILGDHGADVLKVEPPEGDDTRTWGPPFRGGV
CCCCCCCHHHHHHHHHHHHHHCCCHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCH
ASYYMGLNRNKRVQHLDLSSEEGRARLLELAAQADVLVENFKSGTMERWGIGYGELSRRF
HHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCHHHHHHCC
PRLVWCRVSGFGSDGPLGGLPGYDAAVQAMAGIMSVNGESGGGALRVGLPVVDMVTGLHA
CEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHH
VIGVLLALQERQRSGRGQLVEAALYDSGLSLLHPHAANWFMDGRVPGRSGNAHPNIYPYD
HHHHHHHHHHHHHCCCCCEEHHHHHHCCCHHHCCCCCCEEECCCCCCCCCCCCCCCCCCH
TLRTASEPVFVTVGNDRQFAAFCRCIGRPELADDPRFARAGDRSRHRSELKPLLEDATQA
HHHCCCCCEEEEECCCCHHHHHHHHCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHH
LQAAPLVERLMAAGVPAAPVLQVDAALEHPHTAHRKMVVEMGADYRGLGSPVALSRTPAT
HHHHHHHHHHHHCCCCCCCCEEHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCEECCCCCC
YRHPPLTAGDAFLPRDA
CCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]