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The map label for this gene is yvrC [H]

Identifier: 120610225

GI number: 120610225

Start: 1706492

End: 1707463

Strand: Direct

Name: yvrC [H]

Synonym: Aave_1540

Alternate gene names: 120610225

Gene position: 1706492-1707463 (Clockwise)

Preceding gene: 120610224

Following gene: 120610226

Centisome position: 31.88

GC content: 75.21

Gene sequence:

>972_bases
ATGAACCGGTGGTGCCGCGTCATTCCTTTCCTGCAGCGCCTGGGGGCGATGGCCCTGCTGGCATGGTCCGCCGGCGCGCA
GGGGCCGGCCCTGGCGCAGCTGCCGCCGGGGCCCGCGACCGCGGTCTCTGCGGCCTCCGCGGTGCCCGATGCTCCCGCGG
GCGGCGTGGCGATCACCGACGGCCGCGGCCGCCGCATCGCCTTCGCCCGGCCGCCGCAGCGCATCGTGAGCCTGCTGCCC
TCGCTCACCGAATCGGTCTGCGCGCTGCAGCAGTGCGCGCGGCTGGTGGGCGTGGACCGCTATTCCAACTGGCCCGAGTC
CGTGCGCACGCTGCCGCAGATGGGTGGCGGCATCGACCCCAACATCGAGGCCATCGCCGCCCAGCGGCCGGACGTGGTGC
TGCTGGCGACCAGCTCGCGCGCGAGCGACCGGCTGGAGGCGCTGGGCATCCCCGTGGTGGCGCTGGAGCCCAAGACGCAT
GCCGACGTGCGCGAGGTGCTGCGCACCCTGGGCACGCTGCTGGCCGTGCCGCCGCCGCAGGGTGCCGACCGCGTGTGGCG
CGAGATCGACGCGGGCGTGCAGGCGGCCGCGCAGTCGCTGCCGGAGCGCGCGCGCGGCGCGCGCGTGTACTTCGAAGTGA
GCCGGGGGCCCTATGCGGCCGGCACGTCGTCCTTCATCGGCGAGACGCTGGCCCGCCTGGGCGCGCGCAACGTGGTGCCG
CCCGAACTGGGGCCGTTCCCGCGACTGAACCCCGAATTCGTCGTGCGGGCGCAGCCGGACATCATCATGGTGGGCAACAG
CAGCATGCAGGCCCTGGTGCCGTACCCGGGCTGGGACAGCCTGCGCGCGGTGCAGGGGCAGCGTGTCTGCGTGTTCTCCC
CGCGCGAGGCCGACGTGGCGGTGCGCCCCGGCCCGCGCATGGCGGATGCCGCGCGCATCATGGCGCGCTGCCTCGCGGAC
AAGGCGCCATGA

Upstream 100 bases:

>100_bases
ATGCGCTGGGGCGCCTCAACCAGCGCACCGCCGAGGCCTGTGCGCGCGTCACCCTCATGGCGGCCGGCCTGCCGCTCGCA
CTGAAGGAGCCGCCCCAGCC

Downstream 100 bases:

>100_bases
GGCCGGCGGGCGACGGGGCCGGGCATGCCGGCGGTGCCCGCCGGGCGGCGTGGCTGGCCGCGGGGCTGCTGCTGGCCGGC
ACGGCCCTGGTGATGCTGGG

Product: periplasmic-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 323; Mature: 323

Protein sequence:

>323_residues
MNRWCRVIPFLQRLGAMALLAWSAGAQGPALAQLPPGPATAVSAASAVPDAPAGGVAITDGRGRRIAFARPPQRIVSLLP
SLTESVCALQQCARLVGVDRYSNWPESVRTLPQMGGGIDPNIEAIAAQRPDVVLLATSSRASDRLEALGIPVVALEPKTH
ADVREVLRTLGTLLAVPPPQGADRVWREIDAGVQAAAQSLPERARGARVYFEVSRGPYAAGTSSFIGETLARLGARNVVP
PELGPFPRLNPEFVVRAQPDIIMVGNSSMQALVPYPGWDSLRAVQGQRVCVFSPREADVAVRPGPRMADAARIMARCLAD
KAP

Sequences:

>Translated_323_residues
MNRWCRVIPFLQRLGAMALLAWSAGAQGPALAQLPPGPATAVSAASAVPDAPAGGVAITDGRGRRIAFARPPQRIVSLLP
SLTESVCALQQCARLVGVDRYSNWPESVRTLPQMGGGIDPNIEAIAAQRPDVVLLATSSRASDRLEALGIPVVALEPKTH
ADVREVLRTLGTLLAVPPPQGADRVWREIDAGVQAAAQSLPERARGARVYFEVSRGPYAAGTSSFIGETLARLGARNVVP
PELGPFPRLNPEFVVRAQPDIIMVGNSSMQALVPYPGWDSLRAVQGQRVCVFSPREADVAVRPGPRMADAARIMARCLAD
KAP
>Mature_323_residues
MNRWCRVIPFLQRLGAMALLAWSAGAQGPALAQLPPGPATAVSAASAVPDAPAGGVAITDGRGRRIAFARPPQRIVSLLP
SLTESVCALQQCARLVGVDRYSNWPESVRTLPQMGGGIDPNIEAIAAQRPDVVLLATSSRASDRLEALGIPVVALEPKTH
ADVREVLRTLGTLLAVPPPQGADRVWREIDAGVQAAAQSLPERARGARVYFEVSRGPYAAGTSSFIGETLARLGARNVVP
PELGPFPRLNPEFVVRAQPDIIMVGNSSMQALVPYPGWDSLRAVQGQRVCVFSPREADVAVRPGPRMADAARIMARCLAD
KAP

Specific function: Probably part of an ABC transporter complex [H]

COG id: COG0614

COG function: function code P; ABC-type Fe3+-hydroxamate transport system, periplasmic component

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Fe/B12 periplasmic-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002491 [H]

Pfam domain/function: PF01497 Peripla_BP_2 [H]

EC number: NA

Molecular weight: Translated: 34244; Mature: 34244

Theoretical pI: Translated: 10.01; Mature: 10.01

Prosite motif: PS50983 FE_B12_PBP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRWCRVIPFLQRLGAMALLAWSAGAQGPALAQLPPGPATAVSAASAVPDAPAGGVAITD
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCHHHHHHHHCCCCCCCCCEEEEC
GRGRRIAFARPPQRIVSLLPSLTESVCALQQCARLVGVDRYSNWPESVRTLPQMGGGIDP
CCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCHHHHHHHHHHCCCCCC
NIEAIAAQRPDVVLLATSSRASDRLEALGIPVVALEPKTHADVREVLRTLGTLLAVPPPQ
CCHHHCCCCCCEEEEECCCCCHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHEECCCCC
GADRVWREIDAGVQAAAQSLPERARGARVYFEVSRGPYAAGTSSFIGETLARLGARNVVP
CHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCC
PELGPFPRLNPEFVVRAQPDIIMVGNSSMQALVPYPGWDSLRAVQGQRVCVFSPREADVA
CCCCCCCCCCCCEEEEECCCEEEECCCCCEEEECCCCCHHHHHHCCCEEEEECCCCCCEE
VRPGPRMADAARIMARCLADKAP
ECCCCCHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MNRWCRVIPFLQRLGAMALLAWSAGAQGPALAQLPPGPATAVSAASAVPDAPAGGVAITD
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCHHHHHHHHCCCCCCCCCEEEEC
GRGRRIAFARPPQRIVSLLPSLTESVCALQQCARLVGVDRYSNWPESVRTLPQMGGGIDP
CCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCHHHHHHHHHHCCCCCC
NIEAIAAQRPDVVLLATSSRASDRLEALGIPVVALEPKTHADVREVLRTLGTLLAVPPPQ
CCHHHCCCCCCEEEEECCCCCHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHEECCCCC
GADRVWREIDAGVQAAAQSLPERARGARVYFEVSRGPYAAGTSSFIGETLARLGARNVVP
CHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCC
PELGPFPRLNPEFVVRAQPDIIMVGNSSMQALVPYPGWDSLRAVQGQRVCVFSPREADVA
CCCCCCCCCCCCEEEEECCCEEEECCCCCEEEECCCCCHHHHHHCCCEEEEECCCCCCEE
VRPGPRMADAARIMARCLADKAP
ECCCCCHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9639930; 9384377 [H]