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The map label for this gene is ypjD [C]

Identifier: 120609563

GI number: 120609563

Start: 942875

End: 943672

Strand: Reverse

Name: ypjD [C]

Synonym: Aave_0869

Alternate gene names: 120609563

Gene position: 943672-942875 (Counterclockwise)

Preceding gene: 120609565

Following gene: 120609562

Centisome position: 17.63

GC content: 72.93

Gene sequence:

>798_bases
ATGATTTTACCCAGCGTCTCCCCCGCCCACTGGCTGCTCTCCCTGGGCGCGGCGCTGGCCTACGCAGTACCGGCCCTGGC
GGCAGCCCGCATGGGCGCGGAACGCGGCCGCGCCGCGCTGTGGATCGCCTGGGTGCTGCATGCCGCGGTGCTGGCCTGGA
GCCTGCTGGGCGACACGCCCCGCTTCGGCTTCGCGCCCGCGCTCTCGATGACGGCCTGGCTGGTGCTCACCGTCTATGCG
ATCGAGCACCAGGTCTTCCCGCAGATGCGCACGCGCTGGATGCTCGCCGCCCTGGGCGCCGCGGCCGTGCTGCTGGCACT
GGTGTTCCCCGGGCAGCCGCTGCACGTCAATGCCTCGGCATGGCTGCCCCTGCACCTCGCCCTGGGCATCGCCTCCTACG
GCCTCTTCGCCGCGGCCGTCGTGCACGCCTGGCTCATGACCCGCGCCGAGCGCCGCATCCGCCAGGCGGCGGACCCGCGC
AGCGGGGTGCCGCTGCTCACGCTGGAGCGGCTCACCTTCCGCTTCGTCGTGGCCGGCTTCGTGCTGCTCACCGCCACGCT
CGCGGCGGGCCTGCTGTTCGGCGAAACGCTGTACGGCCGCGCCTGGAACTGGGACCACAAGGCCGTGTTCTCCGTGCTCT
CGTGGCTCACCTTCGCCGTGCTGCTCATCGGGCGCTCCCGGCTCGGCTGGCGCGGCCGCATCGCGGTGCGCGTGCTCTAC
GCCGGGGCCGGCCTGCTGCTGCTGGCCTACGTAGGATCGCGCTTCGTGCTCGAAGTGGTGCTGGGGCGTCCGCTGTGA

Upstream 100 bases:

>100_bases
TCGGTGAGGGCGGATGCCATGGGACGTATTCCGGTTGGGCGGGCCGGACGCTGCATCCGGGCCGGGCCGCCTGGGCAGCG
GCGGGCTAAACTGTGGGCCC

Downstream 100 bases:

>100_bases
AATACCTCGTGCTGCTGCTCGTGCTGGCCTTCGCCTTCTGGCTGTGGCGCGGCGGAGCTCGGCGCGGCCGGGTGGCAGGC
GCCGAGGCCCGCGCCCGCCT

Product: cytochrome c assembly protein

Products: NA

Alternate protein names: ORF5 [H]

Number of amino acids: Translated: 265; Mature: 265

Protein sequence:

>265_residues
MILPSVSPAHWLLSLGAALAYAVPALAAARMGAERGRAALWIAWVLHAAVLAWSLLGDTPRFGFAPALSMTAWLVLTVYA
IEHQVFPQMRTRWMLAALGAAAVLLALVFPGQPLHVNASAWLPLHLALGIASYGLFAAAVVHAWLMTRAERRIRQAADPR
SGVPLLTLERLTFRFVVAGFVLLTATLAAGLLFGETLYGRAWNWDHKAVFSVLSWLTFAVLLIGRSRLGWRGRIAVRVLY
AGAGLLLLAYVGSRFVLEVVLGRPL

Sequences:

>Translated_265_residues
MILPSVSPAHWLLSLGAALAYAVPALAAARMGAERGRAALWIAWVLHAAVLAWSLLGDTPRFGFAPALSMTAWLVLTVYA
IEHQVFPQMRTRWMLAALGAAAVLLALVFPGQPLHVNASAWLPLHLALGIASYGLFAAAVVHAWLMTRAERRIRQAADPR
SGVPLLTLERLTFRFVVAGFVLLTATLAAGLLFGETLYGRAWNWDHKAVFSVLSWLTFAVLLIGRSRLGWRGRIAVRVLY
AGAGLLLLAYVGSRFVLEVVLGRPL
>Mature_265_residues
MILPSVSPAHWLLSLGAALAYAVPALAAARMGAERGRAALWIAWVLHAAVLAWSLLGDTPRFGFAPALSMTAWLVLTVYA
IEHQVFPQMRTRWMLAALGAAAVLLALVFPGQPLHVNASAWLPLHLALGIASYGLFAAAVVHAWLMTRAERRIRQAADPR
SGVPLLTLERLTFRFVVAGFVLLTATLAAGLLFGETLYGRAWNWDHKAVFSVLSWLTFAVLLIGRSRLGWRGRIAVRVLY
AGAGLLLLAYVGSRFVLEVVLGRPL

Specific function: Unknown

COG id: COG4137

COG function: function code R; ABC-type uncharacterized transport system, permease component

Gene ontology:

Cell location: Integral membrane protein (Potential) [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI145693174, Length=256, Percent_Identity=30.46875, Blast_Score=66, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002541 [H]

Pfam domain/function: PF01578 Cytochrom_C_asm [H]

EC number: NA

Molecular weight: Translated: 28762; Mature: 28762

Theoretical pI: Translated: 12.01; Mature: 12.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MILPSVSPAHWLLSLGAALAYAVPALAAARMGAERGRAALWIAWVLHAAVLAWSLLGDTP
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC
RFGFAPALSMTAWLVLTVYAIEHQVFPQMRTRWMLAALGAAAVLLALVFPGQPLHVNASA
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCC
WLPLHLALGIASYGLFAAAVVHAWLMTRAERRIRQAADPRSGVPLLTLERLTFRFVVAGF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH
VLLTATLAAGLLFGETLYGRAWNWDHKAVFSVLSWLTFAVLLIGRSRLGWRGRIAVRVLY
HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
AGAGLLLLAYVGSRFVLEVVLGRPL
HHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MILPSVSPAHWLLSLGAALAYAVPALAAARMGAERGRAALWIAWVLHAAVLAWSLLGDTP
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC
RFGFAPALSMTAWLVLTVYAIEHQVFPQMRTRWMLAALGAAAVLLALVFPGQPLHVNASA
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCC
WLPLHLALGIASYGLFAAAVVHAWLMTRAERRIRQAADPRSGVPLLTLERLTFRFVVAGF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH
VLLTATLAAGLLFGETLYGRAWNWDHKAVFSVLSWLTFAVLLIGRSRLGWRGRIAVRVLY
HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
AGAGLLLLAYVGSRFVLEVVLGRPL
HHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7553451 [H]