| Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008752 |
| Length | 5,352,772 |
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The map label for this gene is yhbO [C]
Identifier: 120609441
GI number: 120609441
Start: 798974
End: 799654
Strand: Direct
Name: yhbO [C]
Synonym: Aave_0745
Alternate gene names: 120609441
Gene position: 798974-799654 (Clockwise)
Preceding gene: 120609440
Following gene: 120609442
Centisome position: 14.93
GC content: 69.16
Gene sequence:
>681_bases ATGGCCCGCATCCTGATGGTTCTCACGTCCCATGACCGCCTCGGCGACACCGGCAAGAAGACCGGCTTCTGGCTCGAGGA ATTCGCCGCGCCGTATTACGTTTTCAAGGACGCGGGCGCGGAGATCACCCTCGCATCCCCCGAAGGCGGGCAGCCGCCGC TCGACCCCAAGAGCGACGACGAGAGCGCCCGGACCGACGCCACGCGCCGCTTCAAGGCCGATGCCGAGGCGCAGCAGCAA CTCGCCACCACCGTGCCCCTCGCCAGCGTGCGCGCCGGAGACTTCGATGCCGTGTTCTACCCCGGCGGCCACGGCCCGCT GTGGGACCTGGCCGAGGACGCGCAATCCATCGCGCTGATCGAAAAAACCTTCGCCGCCAAGAAGCCGCTGGCCCTGGTCT GCCACGCCCCCGGCGTGCTGCGCCACGCCAAGGCACCGGGCGGCGAGCCGCTGGTGAAGGGGCGCCAAGTGACGGGCTTC ACCAACAGCGAGGAAGAGGGTGTGCAGCTCACGAAGGTGGTGCCGTTCCTGGTGGAGGACATGCTCAAGGGCAATGGCGG CGAGTACGCCAAGGGCGCGGACTGGGCGCCGTTCGTGCTGGCGGATGGGATGCTGGTGACGGGGCAGAATCCGGCGTCGT CGGAGCCGGCGGCGAAGGCGTTGCTGCGGTTGCTGGGGTGA
Upstream 100 bases:
>100_bases GTAGGCCGGCGCCGCGAACGCGGCGCCATGGGTGCGTGGGCAGGGGGGATTGCGCTACGGTGGAGTGTTGTGTTTCCCCA CTCGACGAAAGCGACACCCC
Downstream 100 bases:
>100_bases ACTTCACGCCAAGGGCGCCTGCCCGATGAGCGGAAGAAGCCTCCGGGAGGCGGCAACTGCAGAGCGTGACTACAATGGCC CTCCATACTCACTGCCATGC
Product: Fis family transcriptional regulator
Products: NA
Alternate protein names: ThiJ/PfpI Domain Protein; ThiJ/PfpI Family Protein; ThiJ/PfpI; DJ-1/PfpI Family Protein; Intracellular Protease/Amidase; NonF-Related Protein; DJ-1/PfpI Family; Chaperone Protein; Peptidase; DJ-1/PfpI-Family Transcriptional Regulator; DJ-1/PfpI Family Transcriptional Regulator; DJ-1/PfPI Family Protein; Intracellular Protease/Amidase ThiJ/PfpL Family; Exported Pfp1 Family Protein; Intracellular Protease/Amidase-Like; C56 Family Peptidase; Thij/Pfpi Domain-Containing Protein; DJ-1/PfpI/ThiJ Superfamily Protein; Transcriptional Regulator; Amidotransferase; PFPI-Like Cystiene Protease; Transcriptional Regulator Fis Family; Intracellular Protease Amidase; Intracellular Protease/Amidase ThiJ/PfpL Family Protein; ThiJ/PfpI Protein; Regulatory Protein; Pfp1 Family Protein; Fis Family Transcriptional Regulator; ThiJ Protein; NonF Protein
Number of amino acids: Translated: 226; Mature: 225
Protein sequence:
>226_residues MARILMVLTSHDRLGDTGKKTGFWLEEFAAPYYVFKDAGAEITLASPEGGQPPLDPKSDDESARTDATRRFKADAEAQQQ LATTVPLASVRAGDFDAVFYPGGHGPLWDLAEDAQSIALIEKTFAAKKPLALVCHAPGVLRHAKAPGGEPLVKGRQVTGF TNSEEEGVQLTKVVPFLVEDMLKGNGGEYAKGADWAPFVLADGMLVTGQNPASSEPAAKALLRLLG
Sequences:
>Translated_226_residues MARILMVLTSHDRLGDTGKKTGFWLEEFAAPYYVFKDAGAEITLASPEGGQPPLDPKSDDESARTDATRRFKADAEAQQQ LATTVPLASVRAGDFDAVFYPGGHGPLWDLAEDAQSIALIEKTFAAKKPLALVCHAPGVLRHAKAPGGEPLVKGRQVTGF TNSEEEGVQLTKVVPFLVEDMLKGNGGEYAKGADWAPFVLADGMLVTGQNPASSEPAAKALLRLLG >Mature_225_residues ARILMVLTSHDRLGDTGKKTGFWLEEFAAPYYVFKDAGAEITLASPEGGQPPLDPKSDDESARTDATRRFKADAEAQQQL ATTVPLASVRAGDFDAVFYPGGHGPLWDLAEDAQSIALIEKTFAAKKPLALVCHAPGVLRHAKAPGGEPLVKGRQVTGFT NSEEEGVQLTKVVPFLVEDMLKGNGGEYAKGADWAPFVLADGMLVTGQNPASSEPAAKALLRLLG
Specific function: Unknown
COG id: COG0693
COG function: function code R; Putative intracellular protease/amidase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Saccharomyces cerevisiae, GI6320742, Length=227, Percent_Identity=32.15859030837, Blast_Score=91, Evalue=2e-19, Organism=Saccharomyces cerevisiae, GI6324967, Length=224, Percent_Identity=29.0178571428571, Blast_Score=65, Evalue=1e-11, Organism=Saccharomyces cerevisiae, GI6324975, Length=224, Percent_Identity=29.0178571428571, Blast_Score=64, Evalue=2e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 24002; Mature: 23871
Theoretical pI: Translated: 4.95; Mature: 4.95
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MARILMVLTSHDRLGDTGKKTGFWLEEFAAPYYVFKDAGAEITLASPEGGQPPLDPKSDD CCEEEEEEECCCCCCCCCCCCCCHHHHHCCCEEEEECCCCEEEEECCCCCCCCCCCCCCC ESARTDATRRFKADAEAQQQLATTVPLASVRAGDFDAVFYPGGHGPLWDLAEDAQSIALI CHHHHHHHHHHCCCHHHHHHHHHHCCHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHH EKTFAAKKPLALVCHAPGVLRHAKAPGGEPLVKGRQVTGFTNSEEEGVQLTKVVPFLVED HHHHHCCCCEEEEECCCCHHHHCCCCCCCCCCCCCEEECCCCCCHHCEEHHHHHHHHHHH MLKGNGGEYAKGADWAPFVLADGMLVTGQNPASSEPAAKALLRLLG HHCCCCCCCCCCCCCCCCEEECCEEEECCCCCCCCHHHHHHHHHHC >Mature Secondary Structure ARILMVLTSHDRLGDTGKKTGFWLEEFAAPYYVFKDAGAEITLASPEGGQPPLDPKSDD CEEEEEEECCCCCCCCCCCCCCHHHHHCCCEEEEECCCCEEEEECCCCCCCCCCCCCCC ESARTDATRRFKADAEAQQQLATTVPLASVRAGDFDAVFYPGGHGPLWDLAEDAQSIALI CHHHHHHHHHHCCCHHHHHHHHHHCCHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHH EKTFAAKKPLALVCHAPGVLRHAKAPGGEPLVKGRQVTGFTNSEEEGVQLTKVVPFLVED HHHHHCCCCEEEEECCCCHHHHCCCCCCCCCCCCCEEECCCCCCHHCEEHHHHHHHHHHH MLKGNGGEYAKGADWAPFVLADGMLVTGQNPASSEPAAKALLRLLG HHCCCCCCCCCCCCCCCCEEECCEEEECCCCCCCCHHHHHHHHHHC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA