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The map label for this gene is yddV [C]

Identifier: 120609442

GI number: 120609442

Start: 800150

End: 800899

Strand: Direct

Name: yddV [C]

Synonym: Aave_0746

Alternate gene names: 120609442

Gene position: 800150-800899 (Clockwise)

Preceding gene: 120609441

Following gene: 120609450

Centisome position: 14.95

GC content: 62.53

Gene sequence:

>750_bases
ATGAACAGCACCGCAGTGATCGCAGAACGCGATGGACCGTTGGCTCTGCTCGCCAGTCTGGCGCCCCGAATTTCCCAGGA
CTCGGCAAAGGTCCTACGGCAGCAACTGATGGCGATGGAGGCCGAAGAGCGCTTGCTCTTGCAAGCCCGGACGCAGGAAA
GGGCACGCGAGTACAGGCGGTTGATCATAGGGGCGACCCTCGGTGGCGCGGCGTTCATCATTTTTCTTGTCTGGAGCGTC
ACCTATGCCGCAGCCCTTTTCCGCCGCAGCACCACGCGAATCGAGACTCTCAGCGAATCGGCAGACTGCGACCCGCTCAC
GGGTTTGCTGAACCGCCGGGCGTTGGAAGAGCGATTCACGAGCCTCGCAGGCTACCCTCTGACCGTTGTCGCGTTCGATC
TGGACGATTTCAAGCCGGTCAACGATACCTATGGGCACCAGGCCGGCGACGAAGTTCTCATGGTCACCGCAAAGCGCATG
TTGCGTGAATGCCGGGATGGCGACCTGGTGGCGCGAGTCGGCGGGGACGAGTTTGTCGTGGTTCTCTCCGGAGTGTCGGA
CGCTGATACCGCTCGCTCCGTGTGCACTCGTCTGCAGCATGTGCTGTGCGAGCCCATCCAGTTGCACACCGCGGCGGTCC
GGGTCGGGGTTTCCCTGGGCTACGAAGTCTCTCCCGGCGGCATCGGCTTGAGCGACTTGCTTGCCAGAGCCGATGCGGCA
GCCTATGCTCAGAAATCAGCCCGCAGGTGA

Upstream 100 bases:

>100_bases
CGACGCTTCCGAACGTCTTGAAGAGCTCGTTCAAGACAACCCCAGGCAAAGCGACCGGGCTTTTGCTCTGCGAGCGGAAA
CTGCAGAGGTTGTCGGGTGG

Downstream 100 bases:

>100_bases
AAAAAACCTGCGCGACGTGGGAGCCGTAACCCGTGGTGGCCCAGGCTGCTTCCTGCGCCGCGACCCGCGGTCAGGCCACG
ACGCTGACCACCGCTGCATA

Product: diguanylate cyclase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 249; Mature: 249

Protein sequence:

>249_residues
MNSTAVIAERDGPLALLASLAPRISQDSAKVLRQQLMAMEAEERLLLQARTQERAREYRRLIIGATLGGAAFIIFLVWSV
TYAAALFRRSTTRIETLSESADCDPLTGLLNRRALEERFTSLAGYPLTVVAFDLDDFKPVNDTYGHQAGDEVLMVTAKRM
LRECRDGDLVARVGGDEFVVVLSGVSDADTARSVCTRLQHVLCEPIQLHTAAVRVGVSLGYEVSPGGIGLSDLLARADAA
AYAQKSARR

Sequences:

>Translated_249_residues
MNSTAVIAERDGPLALLASLAPRISQDSAKVLRQQLMAMEAEERLLLQARTQERAREYRRLIIGATLGGAAFIIFLVWSV
TYAAALFRRSTTRIETLSESADCDPLTGLLNRRALEERFTSLAGYPLTVVAFDLDDFKPVNDTYGHQAGDEVLMVTAKRM
LRECRDGDLVARVGGDEFVVVLSGVSDADTARSVCTRLQHVLCEPIQLHTAAVRVGVSLGYEVSPGGIGLSDLLARADAA
AYAQKSARR
>Mature_249_residues
MNSTAVIAERDGPLALLASLAPRISQDSAKVLRQQLMAMEAEERLLLQARTQERAREYRRLIIGATLGGAAFIIFLVWSV
TYAAALFRRSTTRIETLSESADCDPLTGLLNRRALEERFTSLAGYPLTVVAFDLDDFKPVNDTYGHQAGDEVLMVTAKRM
LRECRDGDLVARVGGDEFVVVLSGVSDADTARSVCTRLQHVLCEPIQLHTAAVRVGVSLGYEVSPGGIGLSDLLARADAA
AYAQKSARR

Specific function: Unknown

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI145693134, Length=152, Percent_Identity=35.5263157894737, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI87082007, Length=203, Percent_Identity=35.9605911330049, Blast_Score=84, Evalue=8e-18,
Organism=Escherichia coli, GI87081977, Length=154, Percent_Identity=34.4155844155844, Blast_Score=81, Evalue=7e-17,
Organism=Escherichia coli, GI87081881, Length=168, Percent_Identity=38.0952380952381, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1788956, Length=151, Percent_Identity=33.112582781457, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1787816, Length=203, Percent_Identity=31.0344827586207, Blast_Score=78, Evalue=7e-16,
Organism=Escherichia coli, GI1788381, Length=172, Percent_Identity=33.1395348837209, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1787541, Length=167, Percent_Identity=32.3353293413174, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1786584, Length=153, Percent_Identity=32.0261437908497, Blast_Score=74, Evalue=7e-15,
Organism=Escherichia coli, GI1787262, Length=94, Percent_Identity=41.4893617021277, Blast_Score=74, Evalue=9e-15,
Organism=Escherichia coli, GI87081974, Length=186, Percent_Identity=26.3440860215054, Blast_Score=71, Evalue=8e-14,
Organism=Escherichia coli, GI1787802, Length=123, Percent_Identity=35.7723577235772, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1787056, Length=158, Percent_Identity=29.746835443038, Blast_Score=69, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330
- InterPro:   IPR000014
- InterPro:   IPR013767 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT; PF00989 PAS [H]

EC number: NA

Molecular weight: Translated: 27082; Mature: 27082

Theoretical pI: Translated: 6.29; Mature: 6.29

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSTAVIAERDGPLALLASLAPRISQDSAKVLRQQLMAMEAEERLLLQARTQERAREYRR
CCCCEEEEECCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LIIGATLGGAAFIIFLVWSVTYAAALFRRSTTRIETLSESADCDPLTGLLNRRALEERFT
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
SLAGYPLTVVAFDLDDFKPVNDTYGHQAGDEVLMVTAKRMLRECRDGDLVARVGGDEFVV
HHCCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCEEEE
VLSGVSDADTARSVCTRLQHVLCEPIQLHTAAVRVGVSLGYEVSPGGIGLSDLLARADAA
EEECCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCEECCCCCCHHHHHHHHHHH
AYAQKSARR
HHHHHHCCC
>Mature Secondary Structure
MNSTAVIAERDGPLALLASLAPRISQDSAKVLRQQLMAMEAEERLLLQARTQERAREYRR
CCCCEEEEECCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LIIGATLGGAAFIIFLVWSVTYAAALFRRSTTRIETLSESADCDPLTGLLNRRALEERFT
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
SLAGYPLTVVAFDLDDFKPVNDTYGHQAGDEVLMVTAKRMLRECRDGDLVARVGGDEFVV
HHCCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCEEEE
VLSGVSDADTARSVCTRLQHVLCEPIQLHTAAVRVGVSLGYEVSPGGIGLSDLLARADAA
EEECCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCEECCCCCCHHHHHHHHHHH
AYAQKSARR
HHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11259647 [H]