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The map label for this gene is hrpB [H]

Identifier: 120609147

GI number: 120609147

Start: 481075

End: 482481

Strand: Reverse

Name: hrpB [H]

Synonym: Aave_0444

Alternate gene names: 120609147

Gene position: 482481-481075 (Counterclockwise)

Preceding gene: 120609149

Following gene: 120609144

Centisome position: 9.01

GC content: 71.0

Gene sequence:

>1407_bases
ATGCTCCTCTCTCTGCTTTCTCTCTCCTCCCAACGCATCGGCGACGGCGCCCAGGCGCTCACGCAAATGCTCCAGAACCT
GCAGGTCAAGGAGGCCGCGACCATGGGACGCAGGCGGCTGGAGCGCGGCCAGTCCCGCGATGCGAGCCCCGTGGAAGAAG
GCGCCCTGCTCGGTCGCACCCTGCTGCTGATAGGACAGGAGGAGCTTGCCAGCGACGTTTTCCACCAGCAGCTCAAGGCC
TACGACGCGGTATCGCGCGCCATGGTGCGCTGGCATTCCGCGCTGGACCAGGCCTGGATGTTCCTGCACCTGCGCAAGCC
CGCCCGGGCAGCCGCCTGCTGGGCGCTCGTGGCCAATGACCACGACGCCCCCGCCCCGCTGCGCGTGGAAGCCTGCTGCG
GACTAGCGCTGTCGCTGCAGGCCCAGGGACAGCATGCCTCGGCACTGGTGGCGGCCCAGCGGGCACAGGCGCTGTGCGAA
TCGGGGGAATCCTCCCGCCTTGCGCTCCACGCCGCAGCCATCCGGCTCGAGGTCCTCTACCGCGTCGAACTGCTGCACAG
CGAAGAACTGTCGGACCACGCCTTCGCCGAAGCGGCCCAGGAACTGGGCCGGGAGCGCATGTCCGGCGAAACGCTCGCCT
CCGAACTGCGCGCACTGGAATCCGGCCCGGACACACCCGCACTGATGCGCGCCCGCCTCGCATACCTGGCAGGCATGCAC
GCCGCCCATCCTGCCGCCCGCCAGGAAGCCGTGGCCGCCTTCGGGCGCTGGCTGCGCCAGCACGGCCTCGCCGGCATCGA
CGCGGAAGCCCGGGTCGAGGGCTGCCTCGCCCTGCTGGCGGGCCGCGCCGTTCCCGCGGCCCGCGAAGCGATCATGCCGC
TGGCCGGGGGCGAGCGCGAGATCGAGCACCACCCCCTGGCCTCGGACATCCAGTACTGCCTGTCGAAAATTCACATGAGC
GAAGGCCGCCTCGGCGAGTCGCTGCGGCAGTACAAGCGCCATGTGGCGCAGGCCATGCGCGTGGTGCACCACGCGGCCCT
GCAGCGGATGGACGCGCCCGCCGCCAACGCCCCCCAGGACACCGTGGGCCTGCGCCTGCCCCCGCGCTACCGCGCCGCCT
ACCGGTACATCATCGAGAACCTGCACGACCCCAACCTCTCGGTGCGCGAGATCGCCGGCCGGCTCGGCGTCACCGAGCGC
GCGCTGCAGCTGGCGTTCCGCAACCACCTGGGCATGACCCCCGCGGAACTGATCCGGCGCGAACGCGTGCGGCGCATCGA
GGGCGAGATGGAAGAGGCCAGCGCCACGGGCGGCCGCGTCCACATGCTGGACGTCGCCTCCCGCTGGGGCATCAGCAACC
GCTCCACCCTGGCGAATGCCTTCAAGCTGTCGTCGATGCGGCACTGA

Upstream 100 bases:

>100_bases
AGGATTTGGAAAACCTAGGTGAGATTTGCCCGCGGCAGGGTTCCTAGCATCGGTCGTCATCCAAACCACATGGGGCGCGG
CGGGGGCCGCGACGATCGAA

Downstream 100 bases:

>100_bases
GCGCCGCGCGCCCGGCCCGGGCGTGCCGGCGGGCAGAAGGCGCGGTCAGGCCGGCCTGCCGTCCGCCCCGTCGCCCGACT
TCTCGCCCGCGGCGACCATC

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 468; Mature: 468

Protein sequence:

>468_residues
MLLSLLSLSSQRIGDGAQALTQMLQNLQVKEAATMGRRRLERGQSRDASPVEEGALLGRTLLLIGQEELASDVFHQQLKA
YDAVSRAMVRWHSALDQAWMFLHLRKPARAAACWALVANDHDAPAPLRVEACCGLALSLQAQGQHASALVAAQRAQALCE
SGESSRLALHAAAIRLEVLYRVELLHSEELSDHAFAEAAQELGRERMSGETLASELRALESGPDTPALMRARLAYLAGMH
AAHPAARQEAVAAFGRWLRQHGLAGIDAEARVEGCLALLAGRAVPAAREAIMPLAGGEREIEHHPLASDIQYCLSKIHMS
EGRLGESLRQYKRHVAQAMRVVHHAALQRMDAPAANAPQDTVGLRLPPRYRAAYRYIIENLHDPNLSVREIAGRLGVTER
ALQLAFRNHLGMTPAELIRRERVRRIEGEMEEASATGGRVHMLDVASRWGISNRSTLANAFKLSSMRH

Sequences:

>Translated_468_residues
MLLSLLSLSSQRIGDGAQALTQMLQNLQVKEAATMGRRRLERGQSRDASPVEEGALLGRTLLLIGQEELASDVFHQQLKA
YDAVSRAMVRWHSALDQAWMFLHLRKPARAAACWALVANDHDAPAPLRVEACCGLALSLQAQGQHASALVAAQRAQALCE
SGESSRLALHAAAIRLEVLYRVELLHSEELSDHAFAEAAQELGRERMSGETLASELRALESGPDTPALMRARLAYLAGMH
AAHPAARQEAVAAFGRWLRQHGLAGIDAEARVEGCLALLAGRAVPAAREAIMPLAGGEREIEHHPLASDIQYCLSKIHMS
EGRLGESLRQYKRHVAQAMRVVHHAALQRMDAPAANAPQDTVGLRLPPRYRAAYRYIIENLHDPNLSVREIAGRLGVTER
ALQLAFRNHLGMTPAELIRRERVRRIEGEMEEASATGGRVHMLDVASRWGISNRSTLANAFKLSSMRH
>Mature_468_residues
MLLSLLSLSSQRIGDGAQALTQMLQNLQVKEAATMGRRRLERGQSRDASPVEEGALLGRTLLLIGQEELASDVFHQQLKA
YDAVSRAMVRWHSALDQAWMFLHLRKPARAAACWALVANDHDAPAPLRVEACCGLALSLQAQGQHASALVAAQRAQALCE
SGESSRLALHAAAIRLEVLYRVELLHSEELSDHAFAEAAQELGRERMSGETLASELRALESGPDTPALMRARLAYLAGMH
AAHPAARQEAVAAFGRWLRQHGLAGIDAEARVEGCLALLAGRAVPAAREAIMPLAGGEREIEHHPLASDIQYCLSKIHMS
EGRLGESLRQYKRHVAQAMRVVHHAALQRMDAPAANAPQDTVGLRLPPRYRAAYRYIIENLHDPNLSVREIAGRLGVTER
ALQLAFRNHLGMTPAELIRRERVRRIEGEMEEASATGGRVHMLDVASRWGISNRSTLANAFKLSSMRH

Specific function: Positive regulation of hypersensitive response genes involved in plant pathogenicity and partly of its own synthesis in minimal medium [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 51333; Mature: 51333

Theoretical pI: Translated: 8.61; Mature: 8.61

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLSLLSLSSQRIGDGAQALTQMLQNLQVKEAATMGRRRLERGQSRDASPVEEGALLGRT
CCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
LLLIGQEELASDVFHQQLKAYDAVSRAMVRWHSALDQAWMFLHLRKPARAAACWALVAND
HHEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCC
HDAPAPLRVEACCGLALSLQAQGQHASALVAAQRAQALCESGESSRLALHAAAIRLEVLY
CCCCCCEEHHHHCCCCEEECCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
RVELLHSEELSDHAFAEAAQELGRERMSGETLASELRALESGPDTPALMRARLAYLAGMH
HHHHHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
AAHPAARQEAVAAFGRWLRQHGLAGIDAEARVEGCLALLAGRAVPAAREAIMPLAGGERE
HCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCC
IEHHPLASDIQYCLSKIHMSEGRLGESLRQYKRHVAQAMRVVHHAALQRMDAPAANAPQD
CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
TVGLRLPPRYRAAYRYIIENLHDPNLSVREIAGRLGVTERALQLAFRNHLGMTPAELIRR
CCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHH
ERVRRIEGEMEEASATGGRVHMLDVASRWGISNRSTLANAFKLSSMRH
HHHHHHHCHHHHHHCCCCEEEEEEHHHHCCCCCHHHHHHHHHHHCCCC
>Mature Secondary Structure
MLLSLLSLSSQRIGDGAQALTQMLQNLQVKEAATMGRRRLERGQSRDASPVEEGALLGRT
CCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
LLLIGQEELASDVFHQQLKAYDAVSRAMVRWHSALDQAWMFLHLRKPARAAACWALVAND
HHEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCC
HDAPAPLRVEACCGLALSLQAQGQHASALVAAQRAQALCESGESSRLALHAAAIRLEVLY
CCCCCCEEHHHHCCCCEEECCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
RVELLHSEELSDHAFAEAAQELGRERMSGETLASELRALESGPDTPALMRARLAYLAGMH
HHHHHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
AAHPAARQEAVAAFGRWLRQHGLAGIDAEARVEGCLALLAGRAVPAAREAIMPLAGGERE
HCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCC
IEHHPLASDIQYCLSKIHMSEGRLGESLRQYKRHVAQAMRVVHHAALQRMDAPAANAPQD
CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
TVGLRLPPRYRAAYRYIIENLHDPNLSVREIAGRLGVTERALQLAFRNHLGMTPAELIRR
CCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHH
ERVRRIEGEMEEASATGGRVHMLDVASRWGISNRSTLANAFKLSSMRH
HHHHHHHCHHHHHHCCCCEEEEEEHHHHCCCCCHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1479894; 11823852 [H]