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The map label for this gene is intD [C]

Identifier: 120609104

GI number: 120609104

Start: 431227

End: 432225

Strand: Reverse

Name: intD [C]

Synonym: Aave_0401

Alternate gene names: 120609104

Gene position: 432225-431227 (Counterclockwise)

Preceding gene: 120609105

Following gene: 120609099

Centisome position: 8.07

GC content: 62.06

Gene sequence:

>999_bases
ATGCCGACCATTCGCAAAAAGGGCGATCACCAATGGCACGCGCAAATCCGTAAGCGCGGCTACCCCAGCCAGACCCGCAC
CTTCACCACCCGCGCCGACGCCGAACGCTGGGCCACCATCGTGGAATCGGAAATGGAACGGGGCATGTTCGTCTCCCGCA
CAGAGGCCGAAGCCACCCTGGTCAGCGACGCGGTGGAACGCTATCGGCGGGAAGTGCTGCCGTCCAAGCGCGGCAAGGCC
GCGGACGAATCCCGGCTCAAAACGCTGCTCAGGTACTTCGGAAGCTACAAGCTCGCAGCCCTCACCTCGACGCTGATCGC
TCAGTTCAGAGATGAGCGATTGACCGCAGTCGGCCCCCAATCCGTCATTCACGAGATCAACCTGCTCAATCGCGTGCTGA
AAGCTGCGGTGATGGATTGGGGCATCGCCCTGCCTCATGGCCTTCCCACTACGAACGTCCGCAAGCCCGCGAAGCCAAAG
GGACGGGAGCGCCGCGTTAGCCAAGAGGAAATTGCCGCCATCGTTGCGCACAGCAGCTCCAGCGAGTTGTCCGTCGCTAT
CACCGTAGCAGTCGAAACAGGCATGCGCCGGGGCGAGCTGGCCGCGCTCACCTGGAGCAATGTGGACCTGATCAAACGTA
CTGCGCATATTCCCCTGACGAAGACAGATGCCCCGCGTACGGTGCCGCTCTCTTCGACGGCTGTTGCAGCCTTGCAGCGT
CTGCTGCCCCCTCATACCGAGGTCATCGGAAAAGACCGGCGAGTGTTCGCCATGCAGGCCGCGTCCATGCAGCAGGCATT
GGAGCGTGCCTGCCAGGCGCATCGCGCGGACATCCACAACCTACGGTTTCATGATCTGCGCCACGAGGCAACCAGCCGCT
TCTTCGAGAAGGGGTTGAGCATGATGGAGGTGGCGGCTATCACCGGACACAAGACGTTGGAGATGCTCAAGCGGTACACC
CATCTCAGAGCGGAGGACTTGGCAAAGCGGCTGGGGTAA

Upstream 100 bases:

>100_bases
CCAAACTATCGGTTTATGAATCAAATAGATAGCGAATTTTTTTGAATTCTTGGCACAGTTTTGGCACACTACAAAAAAAG
TAGCAACCAGACCAGCCAAG

Downstream 100 bases:

>100_bases
GGCTCATCCGTCAATCTCGCTGCCTTGCAAGCTGCACAGGGTGAATCTGAATAACAGTTATATGAGAGATAAAATCAATA
GAAGCCGAGCAGCCAAAAGG

Product: phage integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 332; Mature: 331

Protein sequence:

>332_residues
MPTIRKKGDHQWHAQIRKRGYPSQTRTFTTRADAERWATIVESEMERGMFVSRTEAEATLVSDAVERYRREVLPSKRGKA
ADESRLKTLLRYFGSYKLAALTSTLIAQFRDERLTAVGPQSVIHEINLLNRVLKAAVMDWGIALPHGLPTTNVRKPAKPK
GRERRVSQEEIAAIVAHSSSSELSVAITVAVETGMRRGELAALTWSNVDLIKRTAHIPLTKTDAPRTVPLSSTAVAALQR
LLPPHTEVIGKDRRVFAMQAASMQQALERACQAHRADIHNLRFHDLRHEATSRFFEKGLSMMEVAAITGHKTLEMLKRYT
HLRAEDLAKRLG

Sequences:

>Translated_332_residues
MPTIRKKGDHQWHAQIRKRGYPSQTRTFTTRADAERWATIVESEMERGMFVSRTEAEATLVSDAVERYRREVLPSKRGKA
ADESRLKTLLRYFGSYKLAALTSTLIAQFRDERLTAVGPQSVIHEINLLNRVLKAAVMDWGIALPHGLPTTNVRKPAKPK
GRERRVSQEEIAAIVAHSSSSELSVAITVAVETGMRRGELAALTWSNVDLIKRTAHIPLTKTDAPRTVPLSSTAVAALQR
LLPPHTEVIGKDRRVFAMQAASMQQALERACQAHRADIHNLRFHDLRHEATSRFFEKGLSMMEVAAITGHKTLEMLKRYT
HLRAEDLAKRLG
>Mature_331_residues
PTIRKKGDHQWHAQIRKRGYPSQTRTFTTRADAERWATIVESEMERGMFVSRTEAEATLVSDAVERYRREVLPSKRGKAA
DESRLKTLLRYFGSYKLAALTSTLIAQFRDERLTAVGPQSVIHEINLLNRVLKAAVMDWGIALPHGLPTTNVRKPAKPKG
RERRVSQEEIAAIVAHSSSSELSVAITVAVETGMRRGELAALTWSNVDLIKRTAHIPLTKTDAPRTVPLSSTAVAALQRL
LPPHTEVIGKDRRVFAMQAASMQQALERACQAHRADIHNLRFHDLRHEATSRFFEKGLSMMEVAAITGHKTLEMLKRYTH
LRAEDLAKRLG

Specific function: Integrase From The Cryptic Lambdoic Prophage Dlp12. Integrase Is Necessary For Integration Of The Phage Into The Host Genome By Site-Specific Recombination. In Conjunction With Excisionase, Integrase Is Also Necessary For Excision Of The Prophage From Th

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1786748, Length=220, Percent_Identity=25.9090909090909, Blast_Score=68, Evalue=8e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 37336; Mature: 37204

Theoretical pI: Translated: 10.96; Mature: 10.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPTIRKKGDHQWHAQIRKRGYPSQTRTFTTRADAERWATIVESEMERGMFVSRTEAEATL
CCCCCCCCCHHHHHHHHHCCCCCHHCEEECHHHHHHHHHHHHHHHHCCCEEECCHHHHHH
VSDAVERYRREVLPSKRGKAADESRLKTLLRYFGSYKLAALTSTLIAQFRDERLTAVGPQ
HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCHH
SVIHEINLLNRVLKAAVMDWGIALPHGLPTTNVRKPAKPKGRERRVSQEEIAAIVAHSSS
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHCCCC
SELSVAITVAVETGMRRGELAALTWSNVDLIKRTAHIPLTKTDAPRTVPLSSTAVAALQR
CCEEEEEEEEECCCCCCCCEEEEEECCHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHH
LLPPHTEVIGKDRRVFAMQAASMQQALERACQAHRADIHNLRFHDLRHEATSRFFEKGLS
HCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
MMEVAAITGHKTLEMLKRYTHLRAEDLAKRLG
HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
PTIRKKGDHQWHAQIRKRGYPSQTRTFTTRADAERWATIVESEMERGMFVSRTEAEATL
CCCCCCCCHHHHHHHHHCCCCCHHCEEECHHHHHHHHHHHHHHHHCCCEEECCHHHHHH
VSDAVERYRREVLPSKRGKAADESRLKTLLRYFGSYKLAALTSTLIAQFRDERLTAVGPQ
HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCHH
SVIHEINLLNRVLKAAVMDWGIALPHGLPTTNVRKPAKPKGRERRVSQEEIAAIVAHSSS
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHCCCC
SELSVAITVAVETGMRRGELAALTWSNVDLIKRTAHIPLTKTDAPRTVPLSSTAVAALQR
CCEEEEEEEEECCCCCCCCEEEEEECCHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHH
LLPPHTEVIGKDRRVFAMQAASMQQALERACQAHRADIHNLRFHDLRHEATSRFFEKGLS
HCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
MMEVAAITGHKTLEMLKRYTHLRAEDLAKRLG
HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]