Click here to switch to the map view.

The map label for this gene is trbL [H]

Identifier: 120609098

GI number: 120609098

Start: 424427

End: 426370

Strand: Reverse

Name: trbL [H]

Synonym: Aave_0395

Alternate gene names: 120609098

Gene position: 426370-424427 (Counterclockwise)

Preceding gene: 120609099

Following gene: 120609097

Centisome position: 7.97

GC content: 64.45

Gene sequence:

>1944_bases
ATGACGTCGTGCATCACCCAGCGACGCGCGGCGCTCTTGCTGCTCGTCATCGCATTGACCCTCTTTGCGGCGGATGCGGC
CTTAGCAGACGTGCTGAACGACATTGGCAACGGCTACAAGACCGAGTCGGCCAAGTGGTTCCCCAAGCTCCTGGTTATCG
CCAAGTCCCTGTTCTGGAAGCTAGCGGCGATTGAATTCGCCTGGGCTTCCATCCTGTGGGTGCTGAAAAGCCAGGAAATG
CAGTCGTTCACGGCTGCAGTCGTGCAAAAGCTCATCGGCATCGGGTTCTTCTACTTCCTGCTGCAGAACGCCGACTACTG
GATTCCTGCCATCGTGAACAGTCTGGTAAAGGCAGGCAACGAAGCGACTGGCCTTCCGGCGCTCACGCCGTCCGAGGTTT
TCGACTTGGGCATTGATACGGCAGTTGGGATGTTGAAGGGCATCCAGGCGCTGAGCTTGTGGGAGGATTTCGCTACGGTC
GTAGTTGGCGGCCTCGCCGCACTCGTCATCGTAATTTCGTTCCTGGTCATCGCTGGGCAAATGCTGATCGCGCTCATCGA
GAGCTACATCGCCATCAGCGGCGGCGTGCTGTTCCTGGGCTTCGGCGGTTCGCGGTGGACGGTCGAGTTCACGCAGAAAT
ACATCAGCTACGCATTCGCCACGGGGATCAAGCTGTTCATCCTTTACCTCATCATCGGCGTGGGCACGGCCCAGGCCAGG
ACCTGGGCGTCACTGCTGTTGACGACGGACTGGAACAACATTTTCGCGGTGATGGGTGGCTCGATGCTGCTGGCCTTTCT
GGGCTTCCAGATTCCGAACATGGCGGCCTCCATGCTGTCCGGCGCGCCGTCGCTGACGGCAGGCGCGGCAGCAGCGACAT
CGGGCGCACTTGCTGCCGGCACGGTCGCGGCAGGCGCCACCGCCATATCCCCAGCGCTACAGTCCGCCAGAGGCGGTATG
CAGGCACTGCGGGCGGGATACGACCATCACCGAGCCGGCGGCAATAGCGCACTTTCAAGCGCCCTCAAGGCGGTCGGCAC
ATCCACCGTGGACATGGGCCGCGAAGCCGGCCGGAGTGCCGGCGAGGCCATAGGCCTTGCCAAACCTACGGCGTCCGAGC
GTTCGACAGTGGGTGGCCGCGCGGCTGAGCGCCGTGACGGCATGACGGCTCAGATCCGTGAAGAACGCGCGGCGATGGCC
GACGCAGGCGGCATGAGCAAGAGCAGCGAAAGCGATGCAGGCGCCACGTGCGCGCCGGCCGAAAGCGATGGCGCGAAGAA
CGGTAGCGCCGACAGCAAAAGCACGTCGGCCGCTCCTGTAGTTCCGCCGCCTGGGACACCCTCCGGCGCAACCGGTAGGC
CCGTTGACGAGCTCCACGGAGCCTCCAAACCCATGGCAGGCCATCCGCAGGTTGCCGATGATTACGGCAACGTAGTCGCG
CCGCCCTCGTCCAAGATTGCCGAGAGCAACGCTGGCGGAGTCGGCACGTCGGCCACGAATGTAGCCGCCGCGAACACCAG
CGCGGTCAACACCTCGGCAACGGGCGTGAATGCTGCGCAGGCAGGTAGCTCGGGTAGCGTGCCCGCCCAGACACTGGCCG
CTGCCACACCGGAAGCCCAACGCCAGGTAGGCCAGGACTCCGGCAGTACGGTGTATCCACCCTCCGCCAAGATCGCAGAG
AGCGACGCGGGCGGAGCCGGTACGTCAGCCGCGGGCGTGTCTTCGACGAACACCAGCGCGGGCAACACCTCGACCACGGA
CAAAGCAGCATCATCTGGCGGTGGGTCATCCGCCCCCGCCCCAGAGGCGGGAAAAAGCGGCCCGACCTTGGGCCGCGACA
AGGCCCCATTCCAGGATCTGCAGCGCGTCAGGCCGCCACAGATACCGAATGACGCCGCGCCCCAGGCCGGGGTGAATATC
CGCCTCACGCACTCCGAGGACTAG

Upstream 100 bases:

>100_bases
CCCTCGCTTCTCTGGTTGCGCTCGCAGTCGGTGGCATCAGCGGCGCGCTCGCTCGCGCCGCGAGGGTTGACGATGCGCCC
TGTCAAAGGAGCACGCTCAA

Downstream 100 bases:

>100_bases
CTGATCCAACCACTCTGCAATCAACGCTAAGGAGGTAGAACATGGCGAAGACGAATGCACCGCTCAATGGTGTTTTTCAA
CCATCGACAATGGAATTGCT

Product: TrbL/VirB6 plasmid conjugal transfer protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 647; Mature: 646

Protein sequence:

>647_residues
MTSCITQRRAALLLLVIALTLFAADAALADVLNDIGNGYKTESAKWFPKLLVIAKSLFWKLAAIEFAWASILWVLKSQEM
QSFTAAVVQKLIGIGFFYFLLQNADYWIPAIVNSLVKAGNEATGLPALTPSEVFDLGIDTAVGMLKGIQALSLWEDFATV
VVGGLAALVIVISFLVIAGQMLIALIESYIAISGGVLFLGFGGSRWTVEFTQKYISYAFATGIKLFILYLIIGVGTAQAR
TWASLLLTTDWNNIFAVMGGSMLLAFLGFQIPNMAASMLSGAPSLTAGAAAATSGALAAGTVAAGATAISPALQSARGGM
QALRAGYDHHRAGGNSALSSALKAVGTSTVDMGREAGRSAGEAIGLAKPTASERSTVGGRAAERRDGMTAQIREERAAMA
DAGGMSKSSESDAGATCAPAESDGAKNGSADSKSTSAAPVVPPPGTPSGATGRPVDELHGASKPMAGHPQVADDYGNVVA
PPSSKIAESNAGGVGTSATNVAAANTSAVNTSATGVNAAQAGSSGSVPAQTLAAATPEAQRQVGQDSGSTVYPPSAKIAE
SDAGGAGTSAAGVSSTNTSAGNTSTTDKAASSGGGSSAPAPEAGKSGPTLGRDKAPFQDLQRVRPPQIPNDAAPQAGVNI
RLTHSED

Sequences:

>Translated_647_residues
MTSCITQRRAALLLLVIALTLFAADAALADVLNDIGNGYKTESAKWFPKLLVIAKSLFWKLAAIEFAWASILWVLKSQEM
QSFTAAVVQKLIGIGFFYFLLQNADYWIPAIVNSLVKAGNEATGLPALTPSEVFDLGIDTAVGMLKGIQALSLWEDFATV
VVGGLAALVIVISFLVIAGQMLIALIESYIAISGGVLFLGFGGSRWTVEFTQKYISYAFATGIKLFILYLIIGVGTAQAR
TWASLLLTTDWNNIFAVMGGSMLLAFLGFQIPNMAASMLSGAPSLTAGAAAATSGALAAGTVAAGATAISPALQSARGGM
QALRAGYDHHRAGGNSALSSALKAVGTSTVDMGREAGRSAGEAIGLAKPTASERSTVGGRAAERRDGMTAQIREERAAMA
DAGGMSKSSESDAGATCAPAESDGAKNGSADSKSTSAAPVVPPPGTPSGATGRPVDELHGASKPMAGHPQVADDYGNVVA
PPSSKIAESNAGGVGTSATNVAAANTSAVNTSATGVNAAQAGSSGSVPAQTLAAATPEAQRQVGQDSGSTVYPPSAKIAE
SDAGGAGTSAAGVSSTNTSAGNTSTTDKAASSGGGSSAPAPEAGKSGPTLGRDKAPFQDLQRVRPPQIPNDAAPQAGVNI
RLTHSED
>Mature_646_residues
TSCITQRRAALLLLVIALTLFAADAALADVLNDIGNGYKTESAKWFPKLLVIAKSLFWKLAAIEFAWASILWVLKSQEMQ
SFTAAVVQKLIGIGFFYFLLQNADYWIPAIVNSLVKAGNEATGLPALTPSEVFDLGIDTAVGMLKGIQALSLWEDFATVV
VGGLAALVIVISFLVIAGQMLIALIESYIAISGGVLFLGFGGSRWTVEFTQKYISYAFATGIKLFILYLIIGVGTAQART
WASLLLTTDWNNIFAVMGGSMLLAFLGFQIPNMAASMLSGAPSLTAGAAAATSGALAAGTVAAGATAISPALQSARGGMQ
ALRAGYDHHRAGGNSALSSALKAVGTSTVDMGREAGRSAGEAIGLAKPTASERSTVGGRAAERRDGMTAQIREERAAMAD
AGGMSKSSESDAGATCAPAESDGAKNGSADSKSTSAAPVVPPPGTPSGATGRPVDELHGASKPMAGHPQVADDYGNVVAP
PSSKIAESNAGGVGTSATNVAAANTSAVNTSATGVNAAQAGSSGSVPAQTLAAATPEAQRQVGQDSGSTVYPPSAKIAES
DAGGAGTSAAGVSSTNTSAGNTSTTDKAASSGGGSSAPAPEAGKSGPTLGRDKAPFQDLQRVRPPQIPNDAAPQAGVNIR
LTHSED

Specific function: Unknown

COG id: COG3846

COG function: function code U; Type IV secretory pathway, TrbL components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the trbL/virB6 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014150
- InterPro:   IPR007688 [H]

Pfam domain/function: PF04610 TrbL [H]

EC number: NA

Molecular weight: Translated: 65228; Mature: 65097

Theoretical pI: Translated: 6.08; Mature: 6.08

Prosite motif: PS00777 GLYCOSYL_HYDROL_F11_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSCITQRRAALLLLVIALTLFAADAALADVLNDIGNGYKTESAKWFPKLLVIAKSLFWK
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH
LAAIEFAWASILWVLKSQEMQSFTAAVVQKLIGIGFFYFLLQNADYWIPAIVNSLVKAGN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCC
EATGLPALTPSEVFDLGIDTAVGMLKGIQALSLWEDFATVVVGGLAALVIVISFLVIAGQ
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MLIALIESYIAISGGVLFLGFGGSRWTVEFTQKYISYAFATGIKLFILYLIIGVGTAQAR
HHHHHHHHHHHHCCCEEEEECCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
TWASLLLTTDWNNIFAVMGGSMLLAFLGFQIPNMAASMLSGAPSLTAGAAAATSGALAAG
HHHHHHEECCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHCHHHHCCCCHHHH
TVAAGATAISPALQSARGGMQALRAGYDHHRAGGNSALSSALKAVGTSTVDMGREAGRSA
HHHHCHHHHHHHHHHHHHHHHHHHCCCHHHCCCCHHHHHHHHHHHCCHHHHHHHHHCCHH
GEAIGLAKPTASERSTVGGRAAERRDGMTAQIREERAAMADAGGMSKSSESDAGATCAPA
HHHCCCCCCCCCHHHHCCCCHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
ESDGAKNGSADSKSTSAAPVVPPPGTPSGATGRPVDELHGASKPMAGHPQVADDYGNVVA
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCHHCCCCEEC
PPSSKIAESNAGGVGTSATNVAAANTSAVNTSATGVNAAQAGSSGSVPAQTLAAATPEAQ
CCCHHHHCCCCCCCCCCCCCCEECCCCCCCCCCCCCCHHCCCCCCCCCHHHHHHCCCHHH
RQVGQDSGSTVYPPSAKIAESDAGGAGTSAAGVSSTNTSAGNTSTTDKAASSGGGSSAPA
HHHCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCC
PEAGKSGPTLGRDKAPFQDLQRVRPPQIPNDAAPQAGVNIRLTHSED
CCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCEEEEECCCC
>Mature Secondary Structure 
TSCITQRRAALLLLVIALTLFAADAALADVLNDIGNGYKTESAKWFPKLLVIAKSLFWK
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH
LAAIEFAWASILWVLKSQEMQSFTAAVVQKLIGIGFFYFLLQNADYWIPAIVNSLVKAGN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCC
EATGLPALTPSEVFDLGIDTAVGMLKGIQALSLWEDFATVVVGGLAALVIVISFLVIAGQ
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MLIALIESYIAISGGVLFLGFGGSRWTVEFTQKYISYAFATGIKLFILYLIIGVGTAQAR
HHHHHHHHHHHHCCCEEEEECCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
TWASLLLTTDWNNIFAVMGGSMLLAFLGFQIPNMAASMLSGAPSLTAGAAAATSGALAAG
HHHHHHEECCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHCHHHHCCCCHHHH
TVAAGATAISPALQSARGGMQALRAGYDHHRAGGNSALSSALKAVGTSTVDMGREAGRSA
HHHHCHHHHHHHHHHHHHHHHHHHCCCHHHCCCCHHHHHHHHHHHCCHHHHHHHHHCCHH
GEAIGLAKPTASERSTVGGRAAERRDGMTAQIREERAAMADAGGMSKSSESDAGATCAPA
HHHCCCCCCCCCHHHHCCCCHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
ESDGAKNGSADSKSTSAAPVVPPPGTPSGATGRPVDELHGASKPMAGHPQVADDYGNVVA
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCHHCCCCEEC
PPSSKIAESNAGGVGTSATNVAAANTSAVNTSATGVNAAQAGSSGSVPAQTLAAATPEAQ
CCCHHHHCCCCCCCCCCCCCCEECCCCCCCCCCCCCCHHCCCCCCCCCHHHHHHCCCHHH
RQVGQDSGSTVYPPSAKIAESDAGGAGTSAAGVSSTNTSAGNTSTTDKAASSGGGSSAPA
HHHCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCC
PEAGKSGPTLGRDKAPFQDLQRVRPPQIPNDAAPQAGVNIRLTHSED
CCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]