Click here to switch to the map view.

The map label for this gene is arcB [H]

Identifier: 120608829

GI number: 120608829

Start: 133498

End: 134646

Strand: Reverse

Name: arcB [H]

Synonym: Aave_0121

Alternate gene names: 120608829

Gene position: 134646-133498 (Counterclockwise)

Preceding gene: 120608835

Following gene: 120608828

Centisome position: 2.52

GC content: 73.02

Gene sequence:

>1149_bases
ATGGACCGCACCCATACCTTTCGCCCCGCCCTGCGCCGCACCGGATCCACCGAATTCCTGGACGCACCGCGTGCCGCCGA
ACTGGTGGGAAGCACGGGCGTCATCGCCTGCCTGCGCGCCATCGCCCAGGCCATCGAGGCCGACTTCGCCCGGTGGAACG
ACTTCGACAAGACCGCCCGCACGGCCGCCCATTCGCCGCGCGGCGTGATCGAGCTCATGCCCGTGGCCGATACCCGGCCC
GGCGGCGGCTATGCCTTCAAGTATGTCAACGGCCACCCGGCCAACACGCAGGACGGGCTGCCCACGGTGATGGCCTTCGG
CGCCCTGGCGGACGTGGACACGGGCCTGCCGGTGTTCCTGGGCGAGCTCACCCTGACCACCGCGCTGCGCACGGCCGCCA
CCTCGGCCGTGGCGGCCCGGCGGCTGGCTCGGCAGGACAGCCGCTGCATGGCGCTGATCGGCAACGGCTCGCAGGCCGAG
TTCCAGGCGCTGGCGTTCTTCGGACTGCTGGGCGTGCGCGAACTGCGGCTGTACGACACCGATCCCGCGGCCACGCGCAA
GCTCGTGCGCAACCTCGGCCCCTACGCACGCGATGGGCTGCGCTGCGTGCCGTGCGCGAGCGCGCGCGAAGCGGTGCGCG
GCGCCGACATCGTGACCACGGCGACCGCCGACAAGGCCCGCGCCGCCATCGTCCAGGCCGACATGCTGGAGCCGGGGATG
CACCTGAACGCCGTGGGCGGCGACTGTCCGGGCAAGACCGAGCTGGCGCCGGAGGTGCTGCGGGCAGGTGCGGTTTTCGT
GGAATACGAGCCGCAGACCCGCATCGAGGGCGACCTGCAGCAGATGCCGGCGGACTTTCCCGTCACCGAGCTCTGGCGCG
TGCTGGCGGGTACGGCGCCGGGGCGCGTGTCGCCCGGGCAGGTGACGGTGTTCGATTCGGTGGGCTTCGCGCTGGAGGAC
TACTCCGCCCTGCGCACCATGCGTGCGCTGGGCCAGGCGGCCGGGCTGCTGGACCGCATCGCCCTGGTGCCGGACCTGGC
CGATCCGAAGGACCTGTACGCGCAGTTGCGGCCCTGGTTGCCCGAAGGCGCCCCCGGCGCAGCCGCGTCGGCGCCGCGCG
CTCCCACCTTCGCGCACGAGGCGGCCTGA

Upstream 100 bases:

>100_bases
GCCATAACGCCAGCTTTCTGCGCAATTGCGGTCAATCCTGGCGATTTGGATTGATGCACGCCTGTGGGAACCTCGTACAC
CAGCACCGAAGAGGCATGCC

Downstream 100 bases:

>100_bases
TCTCCGACGCCATCGCGCCGGTCCGCAACGCACAATGGCCGCAGCAGGAGAAACGCCCACCATGGTCAACGCCCCCTTTC
CACGCCCGGTCACGCTGATC

Product: ornithine cyclodeaminase

Products: NA

Alternate protein names: OCD [H]

Number of amino acids: Translated: 382; Mature: 382

Protein sequence:

>382_residues
MDRTHTFRPALRRTGSTEFLDAPRAAELVGSTGVIACLRAIAQAIEADFARWNDFDKTARTAAHSPRGVIELMPVADTRP
GGGYAFKYVNGHPANTQDGLPTVMAFGALADVDTGLPVFLGELTLTTALRTAATSAVAARRLARQDSRCMALIGNGSQAE
FQALAFFGLLGVRELRLYDTDPAATRKLVRNLGPYARDGLRCVPCASAREAVRGADIVTTATADKARAAIVQADMLEPGM
HLNAVGGDCPGKTELAPEVLRAGAVFVEYEPQTRIEGDLQQMPADFPVTELWRVLAGTAPGRVSPGQVTVFDSVGFALED
YSALRTMRALGQAAGLLDRIALVPDLADPKDLYAQLRPWLPEGAPGAAASAPRAPTFAHEAA

Sequences:

>Translated_382_residues
MDRTHTFRPALRRTGSTEFLDAPRAAELVGSTGVIACLRAIAQAIEADFARWNDFDKTARTAAHSPRGVIELMPVADTRP
GGGYAFKYVNGHPANTQDGLPTVMAFGALADVDTGLPVFLGELTLTTALRTAATSAVAARRLARQDSRCMALIGNGSQAE
FQALAFFGLLGVRELRLYDTDPAATRKLVRNLGPYARDGLRCVPCASAREAVRGADIVTTATADKARAAIVQADMLEPGM
HLNAVGGDCPGKTELAPEVLRAGAVFVEYEPQTRIEGDLQQMPADFPVTELWRVLAGTAPGRVSPGQVTVFDSVGFALED
YSALRTMRALGQAAGLLDRIALVPDLADPKDLYAQLRPWLPEGAPGAAASAPRAPTFAHEAA
>Mature_382_residues
MDRTHTFRPALRRTGSTEFLDAPRAAELVGSTGVIACLRAIAQAIEADFARWNDFDKTARTAAHSPRGVIELMPVADTRP
GGGYAFKYVNGHPANTQDGLPTVMAFGALADVDTGLPVFLGELTLTTALRTAATSAVAARRLARQDSRCMALIGNGSQAE
FQALAFFGLLGVRELRLYDTDPAATRKLVRNLGPYARDGLRCVPCASAREAVRGADIVTTATADKARAAIVQADMLEPGM
HLNAVGGDCPGKTELAPEVLRAGAVFVEYEPQTRIEGDLQQMPADFPVTELWRVLAGTAPGRVSPGQVTVFDSVGFALED
YSALRTMRALGQAAGLLDRIALVPDLADPKDLYAQLRPWLPEGAPGAAASAPRAPTFAHEAA

Specific function: Unknown

COG id: COG2423

COG function: function code E; Predicted ornithine cyclodeaminase, mu-crystallin homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ornithine cyclodeaminase family [H]

Homologues:

Organism=Homo sapiens, GI4503065, Length=205, Percent_Identity=30.2439024390244, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI62241008, Length=205, Percent_Identity=30.2439024390244, Blast_Score=84, Evalue=3e-16,
Organism=Drosophila melanogaster, GI24642678, Length=233, Percent_Identity=30.0429184549356, Blast_Score=75, Evalue=9e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003462 [H]

Pfam domain/function: PF02423 OCD_Mu_crystall [H]

EC number: =4.3.1.12 [H]

Molecular weight: Translated: 40492; Mature: 40492

Theoretical pI: Translated: 6.07; Mature: 6.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRTHTFRPALRRTGSTEFLDAPRAAELVGSTGVIACLRAIAQAIEADFARWNDFDKTAR
CCCCCCHHHHHHHCCCCHHHCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHH
TAAHSPRGVIELMPVADTRPGGGYAFKYVNGHPANTQDGLPTVMAFGALADVDTGLPVFL
HHCCCCCCCEEEEECCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCHHHH
GELTLTTALRTAATSAVAARRLARQDSRCMALIGNGSQAEFQALAFFGLLGVRELRLYDT
HHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHEEEEECC
DPAATRKLVRNLGPYARDGLRCVPCASAREAVRGADIVTTATADKARAAIVQADMLEPGM
CHHHHHHHHHHCCHHHHCCCEEECCHHHHHHHCCCCEEEECCCHHHHHHHHHHHHCCCCC
HLNAVGGDCPGKTELAPEVLRAGAVFVEYEPQTRIEGDLQQMPADFPVTELWRVLAGTAP
EEECCCCCCCCCCHHHHHHHHCCEEEEEECCCCCCCCHHHHCCCCCCHHHHHHHHHCCCC
GRVSPGQVTVFDSVGFALEDYSALRTMRALGQAAGLLDRIALVPDLADPKDLYAQLRPWL
CCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCC
PEGAPGAAASAPRAPTFAHEAA
CCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MDRTHTFRPALRRTGSTEFLDAPRAAELVGSTGVIACLRAIAQAIEADFARWNDFDKTAR
CCCCCCHHHHHHHCCCCHHHCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHH
TAAHSPRGVIELMPVADTRPGGGYAFKYVNGHPANTQDGLPTVMAFGALADVDTGLPVFL
HHCCCCCCCEEEEECCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCHHHH
GELTLTTALRTAATSAVAARRLARQDSRCMALIGNGSQAEFQALAFFGLLGVRELRLYDT
HHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHEEEEECC
DPAATRKLVRNLGPYARDGLRCVPCASAREAVRGADIVTTATADKARAAIVQADMLEPGM
CHHHHHHHHHHCCHHHHCCCEEECCHHHHHHHCCCCEEEECCCHHHHHHHHHHHHCCCCC
HLNAVGGDCPGKTELAPEVLRAGAVFVEYEPQTRIEGDLQQMPADFPVTELWRVLAGTAP
EEECCCCCCCCCCHHHHHHHHCCEEEEEECCCCCCCCHHHHCCCCCCHHHHHHHHHCCCC
GRVSPGQVTVFDSVGFALEDYSALRTMRALGQAAGLLDRIALVPDLADPKDLYAQLRPWL
CCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCC
PEGAPGAAASAPRAPTFAHEAA
CCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9375792 [H]